MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 76774 bp
Accession: NZ_CP051688 Location: 258668..335441 Organism: Escherichia coli strain SCU-387 Replicon: chromosome
Accession: NZ_CP051688 Location: 258668..335441 Organism: Escherichia coli strain SCU-387 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HHJ48_RS01150 () | 254104..255570 | - | 1467 | WP_001540447.1 | multidrug efflux transporter outer membrane subunit MdtP | - |
| HHJ48_RS01155 () | 255567..257618 | - | 2052 | WP_001556737.1 | multidrug efflux transporter permease subunit MdtO | - |
| HHJ48_RS01160 () | 257618..258649 | - | 1032 | WP_000446369.1 | multidrug efflux transporter periplasmic adaptor subunit MdtN | - |
| HHJ48_RS01165 () | 258668..258943 | - | 276 | WP_001317551.1 | hypothetical protein | - |
| HHJ48_RS01170 () | 259152..261137 | - | 1986 | WP_001540450.1 | alkyl sulfatase YjcS | - |
| HHJ48_RS01175 () | 261410..262339 | - | 930 | WP_001171678.1 | allose kinase | - |
| HHJ48_RS01180 () | 262323..263018 | - | 696 | WP_001314355.1 | hypothetical protein | VF |
| HHJ48_RS01185 () | 263029..264009 | - | 981 | WP_000507111.1 | D-allose ABC transporter permease | - |
| HHJ48_RS01190 () | 263988..265520 | - | 1533 | WP_000235240.1 | Vitamin B12 import ATP-binding protein BtuD | VF |
| HHJ48_RS01195 () | 265647..266582 | - | 936 | WP_001361478.1 | D-allose transporter substrate-binding protein | - |
| HHJ48_RS01200 () | 266641..267531 | - | 891 | WP_000083216.1 | als operon DNA-binding transcriptional repressor AlsR | - |
| HHJ48_RS01205 () | 267890..268339 | + | 450 | WP_000716792.1 | bifunctional allose-6-phosphate isomerase/ribose-5-phosphate isomerase RpiB | - |
| HHJ48_RS01210 () | 268408..268737 | + | 330 | WP_000819731.1 | protein YjdP | - |
| HHJ48_RS01215 () | 268772..269530 | - | 759 | WP_000059909.1 | phosphonate metabolism protein PhnP | - |
| HHJ48_RS01220 () | 269532..269966 | - | 435 | WP_001110511.1 | aminoalkylphosphonate N-acetyltransferase | - |
| HHJ48_RS01225 () | 269953..270510 | - | 558 | WP_001540453.1 | ribose 1,5-bisphosphokinase | - |
| HHJ48_RS01230 () | 270510..271646 | - | 1137 | WP_001540454.1 | alpha-D-ribose 1-methylphosphonate 5-triphosphate diphosphatase | - |
| HHJ48_RS01235 () | 271643..272323 | - | 681 | WP_000611411.1 | Vitamin B12 import ATP-binding protein BtuD | VF |
| HHJ48_RS01240 () | 272434..273192 | - | 759 | WP_096972723.1 | Vitamin B12 import ATP-binding protein BtuD | VF |
| HHJ48_RS01245 () | 273189..274034 | - | 846 | WP_001540458.1 | alpha-D-ribose 1-methylphosphonate 5-phosphate C-P-lyase PhnJ | - |
| HHJ48_RS01250 () | 274027..275091 | - | 1065 | WP_001540460.1 | alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnI | - |
| HHJ48_RS01255 () | 275091..275675 | - | 585 | WP_000171599.1 | phosphonate C-P lyase system protein PhnH | - |
| HHJ48_RS01260 () | 275672..276124 | - | 453 | WP_000542778.1 | phosphonate C-P lyase system protein PhnG | - |
| HHJ48_RS01265 () | 276125..276850 | - | 726 | WP_024186866.1 | phosphonate metabolism transcriptional regulator PhnF | - |
| HHJ48_RS01270 () | 276871..277650 | - | 780 | WP_001296658.1 | phosphonate ABC transporter, permease protein PhnE | - |
| HHJ48_RS01275 () | 277756..278772 | - | 1017 | WP_001540464.1 | phosphonate ABC transporter substrate-binding protein | - |
| HHJ48_RS01280 () | 278797..279585 | - | 789 | WP_001193413.1 | Vitamin B12 import ATP-binding protein BtuD | VF |
| HHJ48_RS01285 () | 279718..280161 | - | 444 | WP_001131346.1 | VOC family metalloprotein YjdN | - |
| HHJ48_RS01290 () | 280321..280656 | - | 336 | WP_001300891.1 | phnA family protein | - |
| HHJ48_RS01295 () | 281058..283286 | + | 2229 | WP_001540467.1 | clamp-binding protein CrfC | - |
| HHJ48_RS01300 () | 283283..284161 | + | 879 | WP_000169155.1 | YjcZ-like family protein | - |
| HHJ48_RS01305 () | 284425..285927 | + | 1503 | WP_001296659.1 | glycine betaine/L-proline transporter ProP | - |
| HHJ48_RS01310 () | 286039..286128 | + | 90 | WP_000797657.1 | LpxT activity modulator PmrR | - |
| HHJ48_RS01315 () | 286104..287204 | - | 1101 | WP_001052123.1 | two-component system sensor histidine kinase PmrB | - |
| HHJ48_RS01320 () | 287205..287873 | - | 669 | WP_000697907.1 | Regulator of RpoS | VF |
| HHJ48_RS01325 () | 287870..289513 | - | 1644 | WP_001296660.1 | hypothetical protein | VF |
| HHJ48_RS01330 () | 289617..290954 | - | 1338 | WP_000093154.1 | arginine/agmatine antiporter | - |
| HHJ48_RS01335 () | 291091..291852 | - | 762 | WP_001217059.1 | HTH-type transcriptional activator RhaR | VF |
| HHJ48_RS01340 () | 292188..294455 | - | 2268 | WP_021517732.1 | arginine decarboxylase | - |
| HHJ48_RS01345 () | 294654..295562 | - | 909 | WP_001090758.1 | transcriptional regulator MelR | - |
| HHJ48_RS01350 () | 295845..297200 | + | 1356 | WP_000986620.1 | alpha-galactosidase | - |
| HHJ48_RS01355 () | 297197..297847 | - | 651 | WP_000198739.1 | DUF2238 domain-containing protein | - |
| HHJ48_RS01360 () | 297970..299616 | - | 1647 | WP_000066699.1 | class I fumarate hydratase | - |
| HHJ48_RS01365 () | 299694..301034 | - | 1341 | WP_000899522.1 | anaerobic C4-dicarboxylate transporter DcuB | - |
| HHJ48_RS01370 () | 301605..302324 | - | 720 | WP_001540474.1 | two-component system response regulator DcuR | - |
| HHJ48_RS01375 () | 302321..303952 | - | 1632 | WP_001216482.1 | sensor histidine kinase | - |
| HHJ48_RS01380 () | 304133..304363 | + | 231 | WP_000373293.1 | (4Fe-4S)-binding protein | - |
| HHJ48_RS01385 () | 304375..304647 | + | 273 | WP_000405647.1 | N-acetyltransferase | - |
| HHJ48_RS01390 () | 304878..305174 | + | 297 | WP_001312331.1 | type V toxin-antitoxin system endoribonuclease antitoxin GhoS | Antitoxin Detail |
| HHJ48_RS01395 () | 305202..305375 | + | 174 | WP_001173343.1 | type V toxin-antitoxin system toxin GhoT | Toxin Detail |
| HHJ48_RS01400 () | 305494..307011 | - | 1518 | WP_000003806.1 | lysine--tRNA ligase | - |
| HHJ48_RS01405 () | 307248..308705 | - | 1458 | WP_000856826.1 | dipeptide/tripeptide permease DtpC | - |
| HHJ48_RS01410 () | 308764..310911 | - | 2148 | WP_001296667.1 | lysine decarboxylase CadA | - |
| HHJ48_RS01415 () | 310991..312325 | - | 1335 | WP_000092909.1 | cadaverine/lysine antiporter | - |
| HHJ48_RS01420 () | 312691..314229 | - | 1539 | WP_001187191.1 | lysine decarboxylation/transport transcriptional activator CadC | - |
| HHJ48_RS01425 () | 315149..316009 | + | 861 | WP_000158648.1 | hypothetical protein | - |
| HHJ48_RS01430 () | 316226..316459 | + | 234 | WP_000614748.1 | AlpA family transcriptional regulator | - |
| HHJ48_RS01435 () | 316471..316782 | + | 312 | WP_000837633.1 | hypothetical protein | - |
| HHJ48_RS01440 () | 316795..317181 | + | 387 | WP_115766351.1 | hypothetical protein | - |
| HHJ48_RS01445 () | 317198..317485 | + | 288 | WP_001291072.1 | hypothetical protein | - |
| HHJ48_RS01450 () | 317580..317870 | + | 291 | WP_000041811.1 | hypothetical protein | - |
| HHJ48_RS01455 () | 317920..318300 | + | 381 | WP_115766350.1 | hypothetical protein | - |
| HHJ48_RS01460 () | 319217..319621 | - | 405 | WP_001287394.1 | H-NS histone family protein | - |
| HHJ48_RS01465 () | 319775..320242 | - | 468 | WP_001233364.1 | DUF4756 family protein | - |
| HHJ48_RS01470 () | 320344..321045 | - | 702 | WP_000020958.1 | hypothetical protein | - |
| HHJ48_RS26800 () | 321939..322129 | + | 191 | Protein_282 | hypothetical protein | - |
| HHJ48_RS01480 () | 322779..323354 | + | 576 | WP_032174642.1 | hypothetical protein | - |
| HHJ48_RS01485 () | 323360..323911 | + | 552 | WP_001224689.1 | hypothetical protein | - |
| HHJ48_RS01490 () | 323922..324197 | + | 276 | WP_000430101.1 | membrane protein | - |
| HHJ48_RS01495 () | 324270..326066 | - | 1797 | WP_001179376.1 | DUF262 domain-containing protein | - |
| HHJ48_RS01500 () | 326511..328010 | - | 1500 | WP_000964088.1 | MobA/MobL family protein | - |
| HHJ48_RS01505 () | 328843..329154 | + | 312 | WP_000379387.1 | conjugal transfer protein TraD | - |
| HHJ48_RS01510 () | 329300..329773 | + | 474 | WP_001222997.1 | DNA mismatch endonuclease Vsr | - |
| HHJ48_RS01515 () | 330007..331111 | + | 1105 | Protein_290 | DNA cytosine methyltransferase | - |
| HHJ48_RS01520 () | 331177..332184 | - | 1008 | WP_000572864.1 | hypothetical protein | - |
| HHJ48_RS01525 () | 332786..333115 | + | 330 | WP_001401462.1 | hypothetical protein | - |
| HHJ48_RS01530 () | 333137..334144 | + | 1008 | WP_169062246.1 | DUF4868 domain-containing protein | - |
| HHJ48_RS01535 () | 334197..335441 | - | 1245 | WP_001219071.1 | hypothetical protein ; Integrase | Integrase |
| HHJ48_RS01545 () | 335803..336378 | - | 576 | WP_001188520.1 | transcriptional regulator | - |
| HHJ48_RS01550 () | 336415..338112 | - | 1698 | WP_000068944.1 | protein-disulfide reductase DsbD | - |
| HHJ48_RS01555 () | 338088..338426 | - | 339 | WP_000883409.1 | divalent cation tolerance protein CutA | - |
| HHJ48_RS01560 () | 338542..339843 | - | 1302 | WP_000961959.1 | anaerobic C4-dicarboxylate transporter DcuA | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|