MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 58913 bp
Accession: NZ_CP051510 Location: 990165..1049077 Organism: Helicobacter pylori strain ASHA-008 Replicon: chromosome
Accession: NZ_CP051510 Location: 990165..1049077 Organism: Helicobacter pylori strain ASHA-008 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HG557_RS04655 () | 986272..986634 | + | 363 | WP_202135298.1 | hypothetical protein | - |
| HG557_RS04660 () | 987213..988226 | - | 1014 | WP_202135299.1 | LapA family protein | - |
| HG557_RS04665 () | 988236..988688 | - | 453 | WP_001203873.1 | 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH | - |
| HG557_RS04670 () | 988702..989571 | - | 870 | WP_000505052.1 | acetyl-CoA carboxylase, carboxyltransferase subunit beta | - |
| HG557_RS04675 () | 989652..990266 | + | 615 | WP_202132558.1 | recombination protein RecO | - |
| HG557_RS04680 () | 990277..990933 | + | 657 | WP_180585806.1 | nicotinamide-nucleotide amidohydrolase family protein | - |
| HG557_RS04685 () | 990936..991502 | - | 567 | WP_202171536.1 | hypothetical protein | - |
| HG557_RS04690 () | 991567..991974 | - | 408 | WP_202165785.1 | nitroreductase family protein | - |
| HG557_RS04695 () | 991971..992198 | - | 228 | WP_202165787.1 | nitroreductase family protein | - |
| HG557_RS04700 () | 992195..993049 | - | 855 | WP_202165789.1 | prolipoprotein diacylglyceryl transferase | - |
| HG557_RS04705 () | 993059..993787 | - | 729 | WP_000409601.1 | RluA family pseudouridine synthase | - |
| HG557_RS04710 () | 993805..994986 | - | 1182 | WP_202147983.1 | 3-deoxy-D-manno-octulosonic acid transferase | VF |
| HG557_RS04715 () | 994987..995751 | - | 765 | WP_187842955.1 | zinc ribbon domain-containing protein | - |
| HG557_RS04720 () | 995761..996492 | - | 732 | WP_202132563.1 | Nif3-like dinuclear metal center hexameric protein | - |
| HG557_RS04725 () | 996494..997390 | - | 897 | WP_001150911.1 | glycine--tRNA ligase subunit alpha | - |
| HG557_RS04730 () | 997404..998342 | - | 939 | WP_202132564.1 | NAD(P)H-dependent glycerol-3-phosphate dehydrogenase | - |
| HG557_RS04735 () | 998662..998922 | - | 261 | WP_202135305.1 | hypothetical protein | - |
| HG557_RS04740 () | 998959..1000553 | - | 1595 | Protein_924 | dynamin-like GTPase family protein | - |
| HG557_RS04745 () | 1000609..1001373 | + | 765 | WP_202135306.1 | hypothetical protein | - |
| HG557_RS04750 () | 1001384..1003300 | + | 1917 | WP_202135307.1 | hypothetical protein | - |
| HG557_RS04755 () | 1003290..1003592 | + | 303 | WP_000649845.1 | TrbC/VirB2 family protein | - |
| HG557_RS04760 () | 1003866..1004651 | + | 786 | Protein_928 | VirB4 family type IV secretion system protein | - |
| HG557_RS04765 () | 1004777..1005193 | - | 417 | WP_202135308.1 | IS200-IS605 family transposase IS606 | Transposase |
| HG557_RS04770 () | 1005230..1006576 | + | 1347 | WP_202136114.1 | IS200-IS605 family transposase IS606 | Transposase |
| HG557_RS04775 () | 1006630..1007025 | + | 396 | WP_202136012.1 | VirB4 family type IV secretion system protein | - |
| HG557_RS04780 () | 1007087..1008328 | + | 1242 | WP_202136115.1 | Type IV secretion system protein PtlC | VF |
| HG557_RS04785 () | 1008321..1010255 | + | 1935 | WP_202136116.1 | type IA DNA topoisomerase | - |
| HG557_RS04790 () | 1010385..1011371 | + | 987 | WP_202135311.1 | hypothetical protein | VF |
| HG557_RS04795 () | 1011371..1012912 | + | 1542 | WP_202135312.1 | hypothetical protein | VF |
| HG557_RS04800 () | 1012909..1014146 | + | 1238 | Protein_936 | Type IV secretion system protein virB10 | VF |
| HG557_RS04805 () | 1014216..1014508 | + | 293 | Protein_937 | hypothetical protein | - |
| HG557_RS04810 () | 1014501..1014784 | + | 284 | Protein_938 | hypothetical protein | - |
| HG557_RS04815 () | 1014766..1015067 | + | 302 | Protein_939 | hypothetical protein | - |
| HG557_RS04820 () | 1015067..1016008 | + | 942 | Protein_940 | Type IV secretion system protein PtlH | VF |
| HG557_RS04825 () | 1016005..1016460 | + | 456 | WP_202135313.1 | mobilization protein | - |
| HG557_RS04830 () | 1016457..1016747 | + | 291 | WP_202135314.1 | hypothetical protein | - |
| HG557_RS04835 () | 1016748..1017305 | + | 558 | WP_202135315.1 | hypothetical protein | - |
| HG557_RS04840 () | 1017306..1019033 | + | 1728 | WP_202165793.1 | Protein VirD4 | VF |
| HG557_RS04845 () | 1019308..1019589 | - | 282 | WP_000921935.1 | type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family | Toxin Detail |
| HG557_RS04850 () | 1019582..1019896 | - | 315 | WP_000065286.1 | hypothetical protein | Antitoxin Detail |
| HG557_RS04855 () | 1020188..1020343 | + | 156 | WP_202135317.1 | relaxase | - |
| HG557_RS04860 () | 1020360..1020986 | + | 627 | WP_202135318.1 | hypothetical protein | - |
| HG557_RS04865 () | 1021043..1021972 | - | 930 | WP_202135319.1 | hypothetical protein | - |
| HG557_RS04870 () | 1022206..1023183 | + | 978 | WP_202165795.1 | HipA domain-containing protein | - |
| HG557_RS04875 () | 1023355..1023729 | + | 375 | Protein_951 | CAAX protease | - |
| HG557_RS04880 () | 1023751..1024038 | + | 288 | WP_202135321.1 | hypothetical protein | - |
| HG557_RS04885 () | 1024172..1024960 | + | 789 | WP_202135322.1 | Fic family protein | - |
| HG557_RS04890 () | 1025278..1026345 | - | 1068 | WP_202135323.1 | Tyrosine recombinase XerH ; Integrase | Integrase |
| HG557_RS04895 () | 1027442..1029481 | - | 2040 | WP_202135324.1 | relaxase/mobilization nuclease domain-containing protein | - |
| HG557_RS04900 () | 1030488..1032508 | - | 2021 | Protein_956 | dynamin family protein | - |
| HG557_RS04905 () | 1032510..1033479 | - | 970 | Protein_957 | hypothetical protein | - |
| HG557_RS04910 () | 1033907..1034153 | - | 247 | Protein_958 | hypothetical protein | - |
| HG557_RS04915 () | 1034360..1034647 | - | 288 | WP_202132566.1 | virulence factor | - |
| HG557_RS04920 () | 1034715..1034996 | - | 282 | WP_000880304.1 | DUF3240 family protein | - |
| HG557_RS04925 () | 1035007..1038066 | - | 3060 | WP_202132567.1 | CusA/CzcA family heavy metal efflux RND transporter | - |
| HG557_RS04930 () | 1038066..1039145 | - | 1080 | WP_202132568.1 | sodium:proton antiporter | - |
| HG557_RS04935 () | 1039142..1040449 | - | 1308 | WP_202132569.1 | TolC family protein | - |
| HG557_RS04940 () | 1040439..1042541 | - | 2103 | WP_202132570.1 | glycine--tRNA ligase subunit beta | - |
| HG557_RS04945 () | 1042653..1043720 | + | 1068 | WP_202132571.1 | hypothetical protein | - |
| HG557_RS04950 () | 1043733..1045208 | + | 1476 | WP_202132572.1 | 2,3-bisphosphoglycerate-independent phosphoglycerate mutase | - |
| HG557_RS04955 () | 1045223..1045504 | + | 282 | WP_202132573.1 | Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC | - |
| HG557_RS04960 () | 1045578..1046888 | - | 1311 | WP_202135328.1 | Adenosylmethionine-8-amino-7-oxononanoate aminotransferase | VF |
| HG557_RS04965 () | 1047018..1048481 | + | 1464 | WP_202165799.1 | peptidylprolyl isomerase | - |
| HG557_RS04970 () | 1048481..1049980 | + | 1500 | WP_202165801.1 | cell division protein FtsA | - |
| HG557_RS04975 () | 1050110..1051258 | + | 1149 | WP_202166295.1 | cell division protein FtsZ | - |
| HG557_RS04980 () | 1051540..1052862 | - | 1323 | Protein_972 | transposase | - |
| HG557_RS04985 () | 1052973..1053134 | - | 162 | WP_202135331.1 | hypothetical protein | - |
| HG557_RS04990 () | 1053184..1054008 | - | 825 | WP_202132578.1 | mechanosensitive ion channel family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|