MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 58911 bp
Accession: NZ_CP051290 Location: 976741..1035651 Organism: Helicobacter pylori strain ASHA-001 Replicon: chromosome
Accession: NZ_CP051290 Location: 976741..1035651 Organism: Helicobacter pylori strain ASHA-001 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HGI43_RS04625 () | 972858..973220 | + | 363 | WP_202135298.1 | hypothetical protein | - |
| HGI43_RS04630 () | 973789..974802 | - | 1014 | WP_202135299.1 | LapA family protein | - |
| HGI43_RS04635 () | 974812..975264 | - | 453 | WP_001203873.1 | 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH | - |
| HGI43_RS04640 () | 975278..976147 | - | 870 | WP_000505052.1 | acetyl-CoA carboxylase, carboxyltransferase subunit beta | - |
| HGI43_RS04645 () | 976228..976842 | + | 615 | WP_202132558.1 | recombination protein RecO | - |
| HGI43_RS04650 () | 976853..977509 | + | 657 | WP_202135300.1 | nicotinamide-nucleotide amidohydrolase family protein | - |
| HGI43_RS04655 () | 977511..978077 | - | 567 | WP_202135301.1 | hypothetical protein | - |
| HGI43_RS04660 () | 978142..978774 | - | 633 | WP_202135302.1 | NAD(P)H-dependent oxidoreductase | - |
| HGI43_RS04665 () | 978771..979625 | - | 855 | WP_202135303.1 | prolipoprotein diacylglyceryl transferase | - |
| HGI43_RS04670 () | 979635..980363 | - | 729 | WP_120934892.1 | RluA family pseudouridine synthase | - |
| HGI43_RS04675 () | 980381..981562 | - | 1182 | WP_202135304.1 | hypothetical protein | VF |
| HGI43_RS04680 () | 981563..982327 | - | 765 | WP_001091745.1 | zinc ribbon domain-containing protein | - |
| HGI43_RS04685 () | 982337..983068 | - | 732 | WP_202132563.1 | Nif3-like dinuclear metal center hexameric protein | - |
| HGI43_RS04690 () | 983070..983966 | - | 897 | WP_001150911.1 | glycine--tRNA ligase subunit alpha | - |
| HGI43_RS04695 () | 983980..984918 | - | 939 | WP_202132564.1 | NAD(P)H-dependent glycerol-3-phosphate dehydrogenase | - |
| HGI43_RS04700 () | 985238..985498 | - | 261 | WP_202135305.1 | hypothetical protein | - |
| HGI43_RS04705 () | 985535..987114 | - | 1580 | Protein_917 | dynamin-like GTPase family protein | - |
| HGI43_RS04710 () | 987170..987934 | + | 765 | WP_202135306.1 | hypothetical protein | - |
| HGI43_RS04715 () | 987945..989861 | + | 1917 | WP_202135307.1 | hypothetical protein | - |
| HGI43_RS04720 () | 989851..990153 | + | 303 | WP_000649845.1 | TrbC/VirB2 family protein | - |
| HGI43_RS04725 () | 990427..991212 | + | 786 | Protein_921 | VirB4 family type IV secretion system protein | - |
| HGI43_RS04730 () | 991338..991754 | - | 417 | WP_202135308.1 | IS200-IS605 family transposase IS606 | Transposase |
| HGI43_RS04735 () | 991791..993137 | + | 1347 | WP_202135309.1 | IS200-IS605 family transposase IS606 | Transposase |
| HGI43_RS04740 () | 993191..993586 | + | 396 | WP_202136012.1 | VirB4 family type IV secretion system protein | - |
| HGI43_RS04745 () | 993648..994889 | + | 1242 | WP_202135310.1 | hypothetical protein | VF |
| HGI43_RS04750 () | 994882..996817 | + | 1936 | Protein_926 | type IA DNA topoisomerase | - |
| HGI43_RS04755 () | 996947..997933 | + | 987 | WP_202135311.1 | hypothetical protein | VF |
| HGI43_RS04760 () | 997933..999474 | + | 1542 | WP_202135312.1 | hypothetical protein | VF |
| HGI43_RS04765 () | 999471..1000708 | + | 1238 | Protein_929 | hypothetical protein | VF |
| HGI43_RS04770 () | 1000778..1001070 | + | 293 | Protein_930 | hypothetical protein | - |
| HGI43_RS04775 () | 1001063..1001346 | + | 284 | Protein_931 | hypothetical protein | - |
| HGI43_RS04780 () | 1001328..1001629 | + | 302 | Protein_932 | hypothetical protein | - |
| HGI43_RS04785 () | 1001629..1002570 | + | 942 | Protein_933 | hypothetical protein | VF |
| HGI43_RS04790 () | 1002567..1003022 | + | 456 | WP_202135313.1 | mobilization protein | - |
| HGI43_RS04795 () | 1003019..1003309 | + | 291 | WP_202135314.1 | hypothetical protein | - |
| HGI43_RS04800 () | 1003310..1003867 | + | 558 | WP_202135315.1 | hypothetical protein | - |
| HGI43_RS04805 () | 1003868..1005595 | + | 1728 | WP_202135316.1 | hypothetical protein | VF |
| HGI43_RS04810 () | 1005870..1006151 | - | 282 | WP_000921935.1 | type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family | Toxin Detail |
| HGI43_RS04815 () | 1006144..1006458 | - | 315 | WP_000065286.1 | hypothetical protein | Antitoxin Detail |
| HGI43_RS04820 () | 1006750..1006905 | + | 156 | WP_202135317.1 | relaxase | - |
| HGI43_RS04825 () | 1006922..1007548 | + | 627 | WP_202135318.1 | hypothetical protein | - |
| HGI43_RS04830 () | 1007605..1008534 | - | 930 | WP_202135319.1 | hypothetical protein | - |
| HGI43_RS04835 () | 1008768..1009745 | + | 978 | WP_202135320.1 | HipA domain-containing protein | - |
| HGI43_RS04840 () | 1009917..1010291 | + | 375 | Protein_944 | CAAX protease | - |
| HGI43_RS04845 () | 1010313..1010600 | + | 288 | WP_202135321.1 | hypothetical protein | - |
| HGI43_RS04850 () | 1010734..1011522 | + | 789 | WP_202135322.1 | Fic family protein | - |
| HGI43_RS04855 () | 1011840..1012907 | - | 1068 | WP_202135323.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| HGI43_RS04860 () | 1014004..1016043 | - | 2040 | WP_202135324.1 | relaxase/mobilization nuclease domain-containing protein | - |
| HGI43_RS04865 () | 1017049..1019069 | - | 2021 | Protein_949 | dynamin family protein | - |
| HGI43_RS04870 () | 1019071..1020718 | - | 1648 | Protein_950 | dynamin family protein | - |
| HGI43_RS04875 () | 1020934..1021221 | - | 288 | WP_202135325.1 | virulence factor | - |
| HGI43_RS04880 () | 1021289..1021570 | - | 282 | WP_000880304.1 | DUF3240 family protein | - |
| HGI43_RS04885 () | 1021581..1024640 | - | 3060 | WP_202135326.1 | CusA/CzcA family heavy metal efflux RND transporter | - |
| HGI43_RS04890 () | 1024640..1025719 | - | 1080 | WP_202132568.1 | sodium:proton antiporter | - |
| HGI43_RS04895 () | 1025716..1027023 | - | 1308 | WP_202132569.1 | TolC family protein | - |
| HGI43_RS04900 () | 1027013..1029115 | - | 2103 | WP_202132570.1 | glycine--tRNA ligase subunit beta | - |
| HGI43_RS04905 () | 1029227..1030294 | + | 1068 | WP_202135327.1 | hypothetical protein | - |
| HGI43_RS04910 () | 1030307..1031782 | + | 1476 | WP_202132572.1 | 2,3-bisphosphoglycerate-independent phosphoglycerate mutase | - |
| HGI43_RS04915 () | 1031797..1032078 | + | 282 | WP_202132573.1 | Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC | - |
| HGI43_RS04920 () | 1032152..1033462 | - | 1311 | WP_202135328.1 | Adenosylmethionine-8-amino-7-oxononanoate aminotransferase | VF |
| HGI43_RS04925 () | 1033592..1035055 | + | 1464 | WP_202135329.1 | peptidylprolyl isomerase | - |
| HGI43_RS04930 () | 1035055..1036554 | + | 1500 | WP_202135330.1 | cell division protein FtsA | - |
| HGI43_RS04935 () | 1036684..1037832 | + | 1149 | WP_202132577.1 | cell division protein FtsZ | - |
| HGI43_RS04940 () | 1038114..1039436 | - | 1323 | Protein_964 | transposase | - |
| HGI43_RS04945 () | 1039547..1039708 | - | 162 | WP_202135331.1 | hypothetical protein | - |
| HGI43_RS04950 () | 1039758..1040582 | - | 825 | WP_202135332.1 | mechanosensitive ion channel family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|