MGE detailed information
MGE type: Genomic_island MGE length: 73965 bp
Accession: NZ_CP051222 Location: 3726675..3800639 Organism: Escherichia coli strain SCZE5 Replicon: chromosome
Accession: NZ_CP051222 Location: 3726675..3800639 Organism: Escherichia coli strain SCZE5 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HF562_RS18110 () | 3722392..3723060 | + | 669 | WP_001209100.1 | hypothetical protein | - |
| HF562_RS18115 () | 3723303..3723998 | - | 696 | WP_000370307.1 | lactate utilization protein C | - |
| HF562_RS18120 () | 3723991..3725418 | - | 1428 | WP_000023927.1 | iron-sulfur cluster-binding protein | - |
| HF562_RS18125 () | 3725429..3726148 | - | 720 | WP_001102108.1 | (Fe-S)-binding protein | - |
| HF562_RS18130 () | 3726675..3727529 | - | 855 | WP_000339594.1 | DNA-binding transcriptional regulator RclR | - |
| HF562_RS18135 () | 3727755..3729080 | + | 1326 | WP_001046307.1 | pyridine nucleotide-disulfide oxidoreductase | - |
| HF562_RS18140 () | 3729189..3729425 | + | 237 | WP_000474077.1 | DUF1471 domain-containing protein | - |
| HF562_RS18145 () | 3729437..3730030 | + | 594 | WP_001299021.1 | reactive chlorine species resistance protein RclC | - |
| HF562_RS18150 () | 3730190..3730318 | - | 129 | Protein_3555 | aldo/keto reductase | - |
| HF562_RS18155 () | 3730621..3731379 | + | 759 | Protein_3556 | Right origin-binding protein | VF |
| HF562_RS18160 () | 3731395..3732092 | - | 698 | Protein_3557 | IS1 family transposase IS1X2 | Transposase |
| HF562_RS18165 () | 3732148..3732249 | + | 102 | Protein_3558 | AraC family transcriptional regulator | - |
| HF562_RS18170 () | 3732389..3735419 | - | 3031 | Protein_3559 | Invasin | VF |
| HF562_RS18175 () | 3736534..3736635 | + | 102 | WP_000662258.1 | hypothetical protein | - |
| HF562_RS18180 () | 3736999..3737262 | + | 264 | WP_000803998.1 | type B 50S ribosomal protein L31 | - |
| HF562_RS18185 () | 3737262..3737402 | + | 141 | WP_000866436.1 | type B 50S ribosomal protein L36 | - |
| HF562_RS18190 () | 3737437..3737664 | - | 228 | WP_001147279.1 | hypothetical protein | - |
| HF562_RS18195 () | 3738487..3739029 | + | 543 | WP_001301257.1 | HTH-type transcriptional regulator EcpR | VF |
| HF562_RS18200 () | 3739055..3739690 | + | 636 | WP_000150118.1 | Common pilus major fimbrillin subunit EcpA | VF |
| HF562_RS18205 () | 3739748..3740416 | + | 669 | WP_000716394.1 | putative fimbrial chaperone EcpB | VF |
| HF562_RS18210 () | 3740442..3742967 | + | 2526 | WP_113403831.1 | putative outer membrane usher protein EcpC | VF |
| HF562_RS18215 () | 3742957..3744600 | + | 1644 | WP_001301239.1 | Fimbria adhesin EcpD | VF |
| HF562_RS18220 () | 3744569..3745279 | + | 711 | WP_001301243.1 | putative fimbrial chaperone EcpE | VF |
| HF562_RS18225 () | 3745592..3745921 | + | 330 | WP_001303809.1 | YkgJ family cysteine cluster protein | - |
| HF562_RS18230 () | 3745951..3746163 | - | 213 | WP_000998331.1 | hypothetical protein | - |
| HF562_RS18235 () | 3746168..3746782 | - | 615 | WP_001019920.1 | YagU family protein | - |
| HF562_RS18240 () | 3747199..3747888 | + | 690 | WP_000070679.1 | aldehyde dehydrogenase iron-sulfur subunit | - |
| HF562_RS18245 () | 3747885..3748841 | + | 957 | WP_000643325.1 | aldehyde oxidoreductase FAD-binding subunit PaoB | - |
| HF562_RS18250 () | 3748838..3751036 | + | 2199 | WP_113403832.1 | aldehyde oxidoreductase molybdenum-binding subunit PaoC | - |
| HF562_RS18255 () | 3751046..3752002 | + | 957 | WP_000122393.1 | molybdenum cofactor insertion chaperone PaoD | - |
| HF562_RS18260 () | 3752053..3752391 | + | 339 | Protein_3577 | LysR family transcriptional regulator | - |
| HF562_RS18265 () | 3752679..3753956 | + | 1278 | WP_004009008.1 | hypothetical protein ; Integrase | Integrase |
| HF562_RS18270 () | 3754037..3754714 | - | 678 | WP_032259539.1 | hypothetical protein | - |
| HF562_RS18275 () | 3754762..3756606 | - | 1845 | WP_032259537.1 | hypothetical protein | - |
| HF562_RS18280 () | 3756641..3756838 | - | 198 | WP_072002327.1 | hypothetical protein | - |
| HF562_RS18285 () | 3756990..3758021 | - | 1032 | WP_001535837.1 | hypothetical protein | - |
| HF562_RS18290 () | 3758036..3758419 | - | 384 | WP_000013184.1 | hypothetical protein | - |
| HF562_RS18295 () | 3758424..3758621 | - | 198 | WP_000807036.1 | hypothetical protein | - |
| HF562_RS18300 () | 3759606..3759914 | - | 309 | WP_004012241.1 | hypothetical protein | - |
| HF562_RS18305 () | 3759914..3760117 | - | 204 | WP_004012243.1 | hypothetical protein | - |
| HF562_RS18310 () | 3760217..3760486 | - | 270 | WP_001551599.1 | hypothetical protein | - |
| HF562_RS18315 () | 3760496..3761122 | - | 627 | WP_000610007.1 | hypothetical protein | - |
| HF562_RS18320 () | 3761174..3761341 | - | 168 | WP_000005054.1 | hypothetical protein | - |
| HF562_RS18325 () | 3761364..3761540 | - | 177 | WP_004012251.1 | hypothetical protein | - |
| HF562_RS24950 () | 3763607..3763918 | - | 312 | WP_001436958.1 | hypothetical protein | - |
| HF562_RS18335 () | 3764763..3764915 | - | 153 | WP_000788776.1 | hypothetical protein | - |
| HF562_RS18345 () | 3765712..3766965 | - | 1254 | WP_000893272.1 | glutamate-5-semialdehyde dehydrogenase | - |
| HF562_RS18350 () | 3766977..3768080 | - | 1104 | WP_001285288.1 | glutamate 5-kinase | - |
| HF562_RS18355 () | 3768368..3769423 | + | 1056 | WP_000749881.1 | phosphoporin PhoE | - |
| HF562_RS18360 () | 3769462..3769863 | - | 402 | WP_000174677.1 | sigma factor-binding protein Crl | - |
| HF562_RS18365 () | 3769921..3771165 | - | 1245 | WP_000189541.1 | esterase FrsA | - |
| - () | 3770581..3770661 | - | 81 | NuclAT_13 | - | - |
| - () | 3770581..3770661 | - | 81 | NuclAT_13 | - | - |
| - () | 3770581..3770661 | - | 81 | NuclAT_13 | - | - |
| - () | 3770581..3770661 | - | 81 | NuclAT_13 | - | - |
| HF562_RS18370 () | 3771257..3771715 | - | 459 | WP_001291990.1 | xanthine phosphoribosyltransferase | - |
| HF562_RS18375 () | 3771976..3773433 | + | 1458 | WP_001293003.1 | cytosol nonspecific dipeptidase | - |
| HF562_RS18380 () | 3773490..3774011 | - | 522 | Protein_3600 | peptide chain release factor H | - |
| HF562_RS18385 () | 3774010..3774213 | - | 204 | Protein_3601 | RNA ligase RtcB family protein | - |
| HF562_RS18390 () | 3774459..3774911 | - | 453 | WP_001059847.1 | GNAT family N-acetyltransferase | - |
| HF562_RS18395 () | 3774921..3775319 | - | 399 | WP_001263493.1 | type II toxin-antitoxin system mRNA interferase toxin YafO | Toxin Detail |
| HF562_RS18400 () | 3775322..3775615 | - | 294 | WP_000554757.1 | type I toxin-antitoxin system antitoxin YafN | Antitoxin Detail |
| HF562_RS18405 () | 3775667..3776722 | - | 1056 | WP_001226164.1 | DNA polymerase IV | - |
| HF562_RS18410 () | 3776793..3777578 | - | 786 | WP_000207564.1 | Chemotaxis protein LafU | VF |
| HF562_RS18415 () | 3777550..3779262 | + | 1713 | Protein_3607 | Flagellar biosynthesis protein FlhA | VF |
| HF562_RS18420 () | 3779478..3779975 | - | 498 | WP_000006260.1 | REP-associated tyrosine transposase RayT | - |
| HF562_RS18425 () | 3780151..3780924 | - | 774 | WP_001353765.1 | Murein DD-endopeptidase MepH | VF |
| HF562_RS18430 () | 3781110..3781370 | + | 261 | WP_000729704.1 | type II toxin-antitoxin system antitoxin DinJ | Antitoxin Detail |
| HF562_RS18435 () | 3781373..3781651 | + | 279 | WP_000615981.1 | type II toxin-antitoxin system mRNA interferase toxin YafQ | Toxin Detail |
| HF562_RS18440 () | 3781807..3782547 | + | 741 | WP_001225679.1 | murein L,D-transpeptidase | - |
| HF562_RS18445 () | 3782518..3783285 | - | 768 | WP_000333379.1 | class II glutamine amidotransferase | - |
| HF562_RS18450 () | 3783491..3784069 | - | 579 | WP_000284050.1 | Phosphoheptose isomerase | VF |
| HF562_RS18455 () | 3784309..3786753 | + | 2445 | WP_000973107.1 | Acyl-coenzyme A dehydrogenase | VF |
| HF562_RS18460 () | 3786796..3787242 | - | 447 | WP_203170292.1 | Ivy family C-type lysozyme inhibitor | - |
| HF562_RS18465 () | 3787423..3788193 | + | 771 | WP_001118036.1 | 2-oxoglutaramate amidase | - |
| HF562_RS18470 () | 3788234..3789370 | - | 1137 | WP_000420818.1 | ISAs1 family transposase ISEc1 | Transposase |
| HF562_RS18475 () | 3789801..3790193 | - | 393 | WP_001101839.1 | hypothetical protein | - |
| HF562_RS18480 () | 3790171..3791580 | - | 1410 | Protein_3620 | Protein RhsD | VF |
| HF562_RS18485 () | 3791580..3793091 | + | 1512 | Protein_3621 | hypothetical protein | VF |
| HF562_RS18490 () | 3793102..3794454 | + | 1353 | WP_001087741.1 | hypothetical protein | VF |
| HF562_RS18495 () | 3794478..3794960 | + | 483 | WP_001284199.1 | Major exported protein | VF |
| HF562_RS18500 () | 3795004..3795918 | + | 915 | WP_000908052.1 | hypothetical protein | - |
| HF562_RS18505 () | 3795928..3796407 | + | 480 | WP_113403945.1 | hypothetical protein | - |
| HF562_RS18510 () | 3796544..3797329 | - | 786 | WP_001053631.1 | hypothetical protein | - |
| HF562_RS18520 () | 3797868..3798599 | - | 732 | WP_001300756.1 | DNA polymerase III subunit epsilon | - |
| HF562_RS18525 () | 3798664..3799131 | + | 468 | WP_000917883.1 | ribonuclease HI | - |
| HF562_RS18530 () | 3799128..3799850 | - | 723 | WP_001297210.1 | class I SAM-dependent methyltransferase | - |
| HF562_RS18535 () | 3799884..3800639 | + | 756 | WP_001052717.1 | hydroxyacylglutathione hydrolase | - |
| HF562_RS18540 () | 3800711..3802069 | + | 1359 | WP_000644685.1 | murein transglycosylase D | - |
| HF562_RS18545 () | 3802117..3802713 | - | 597 | Protein_3632 | methyltransferase domain-containing protein | - |
| HF562_RS18550 () | 3802744..3803544 | - | 801 | WP_001230983.1 | endonuclease/exonuclease/phosphatase family protein | - |
| HF562_RS18555 () | 3803785..3804699 | + | 915 | WP_000648577.1 | LysR family transcriptional regulator | - |
| HF562_RS18560 () | 3804696..3805499 | - | 804 | WP_000997050.1 | 2,5-didehydrogluconate reductase DkgB | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|