MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 116556 bp
Accession: NZ_CP048838 Location: 3069902..3186457 Organism: [Clostridium] innocuum strain ATCC 14501 Replicon: chromosome
Accession: NZ_CP048838 Location: 3069902..3186457 Organism: [Clostridium] innocuum strain ATCC 14501 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| G4D54_RS14950 () | 3065622..3066566 | - | 945 | WP_002609894.1 | alkaline phosphatase family protein | - |
| G4D54_RS14955 () | 3066603..3067784 | - | 1182 | WP_002609893.1 | pyridoxal phosphate-dependent aminotransferase | - |
| G4D54_RS14960 () | 3067781..3068613 | - | 833 | Protein_2908 | DUF3737 family protein | - |
| G4D54_RS14965 () | 3068823..3069974 | - | 1152 | WP_002609891.1 | MFS transporter | - |
| G4D54_RS14970 () | 3069994..3070317 | - | 324 | WP_002609889.1 | hypothetical protein | - |
| G4D54_RS14975 () | 3070295..3070843 | - | 549 | WP_008728575.1 | flavodoxin family protein | - |
| G4D54_RS14980 () | 3071038..3071847 | - | 810 | WP_002609886.1 | aldo/keto reductase | - |
| G4D54_RS14985 () | 3072094..3072444 | - | 351 | WP_002609884.1 | MerR family transcriptional regulator | - |
| G4D54_RS14990 () | 3072549..3073163 | - | 615 | WP_002609883.1 | LysE family transporter | - |
| G4D54_RS14995 () | 3073175..3073396 | - | 222 | WP_002609881.1 | hypothetical protein | - |
| G4D54_RS15000 () | 3073466..3073993 | - | 528 | WP_002609879.1 | Serine acetyltransferase | VF |
| G4D54_RS15005 () | 3074015..3074578 | - | 564 | WP_002609876.1 | hypothetical protein | - |
| G4D54_RS15010 () | 3074618..3076966 | - | 2349 | WP_002609874.1 | FtsX-like permease family protein | - |
| G4D54_RS15015 () | 3076980..3077735 | - | 756 | WP_002609872.1 | Lipoprotein-releasing system ATP-binding protein LolD | VF |
| G4D54_RS15020 () | 3077732..3079087 | - | 1356 | WP_002609870.1 | phenylacetate--CoA ligase family protein | - |
| G4D54_RS15025 () | 3079104..3080201 | - | 1098 | WP_002609868.1 | linear amide C-N hydrolase | - |
| G4D54_RS15030 () | 3080340..3081224 | + | 885 | WP_002609866.1 | LysR family transcriptional regulator | - |
| G4D54_RS15035 () | 3081352..3082692 | - | 1341 | WP_002609863.1 | IS4 family transposase IS1675 | Transposase |
| G4D54_RS15040 () | 3082976..3084415 | - | 1440 | WP_002609862.1 | family 1 glycosylhydrolase | - |
| G4D54_RS15045 () | 3084427..3085521 | - | 1095 | WP_002609859.1 | glucose PTS transporter subunit IIA | - |
| G4D54_RS15050 () | 3085518..3086300 | - | 783 | WP_002609857.1 | PTS transporter subunit EIIB | - |
| G4D54_RS15055 () | 3086591..3087523 | - | 933 | WP_002609855.1 | hypothetical protein | - |
| G4D54_RS15060 () | 3087693..3087977 | - | 285 | WP_081616020.1 | hypothetical protein | - |
| G4D54_RS15065 () | 3087964..3088287 | - | 324 | WP_142692053.1 | hypothetical protein | - |
| G4D54_RS15070 () | 3088324..3088572 | - | 249 | WP_142692052.1 | hypothetical protein | - |
| G4D54_RS15075 () | 3088761..3088898 | - | 138 | WP_156346885.1 | hypothetical protein | - |
| G4D54_RS15080 () | 3088925..3090091 | - | 1167 | WP_002609852.1 | Long-chain-alcohol dehydrogenase 2 | VF |
| G4D54_RS15085 () | 3090085..3090633 | - | 549 | WP_002609850.1 | flavodoxin family protein | - |
| G4D54_RS15090 () | 3090643..3091590 | - | 948 | WP_002609849.1 | alpha/beta hydrolase | - |
| G4D54_RS15095 () | 3092030..3092116 | - | 87 | Protein_2935 | PTS lactose/cellobiose transporter subunit IIA | - |
| G4D54_RS15100 () | 3092607..3093905 | - | 1299 | WP_002609847.1 | group II intron reverse transcriptase/maturase | - |
| G4D54_RS23180 () | 3094407..3094607 | - | 201 | WP_002609845.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| G4D54_RS15110 () | 3094732..3095040 | - | 309 | WP_002609843.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | - |
| G4D54_RS15115 () | 3095509..3096381 | - | 873 | WP_081616019.1 | DUF4062 domain-containing protein | - |
| G4D54_RS15120 () | 3096426..3097277 | - | 852 | Protein_2940 | KilA-N domain-containing protein | - |
| G4D54_RS15125 () | 3097357..3097632 | - | 276 | WP_002609835.1 | hypothetical protein | - |
| G4D54_RS15130 () | 3097632..3097895 | - | 264 | WP_002609833.1 | hypothetical protein | - |
| G4D54_RS15135 () | 3098345..3098635 | - | 291 | WP_002609831.1 | hypothetical protein | - |
| G4D54_RS15140 () | 3098610..3100640 | - | 2031 | WP_002609829.1 | hypothetical protein | - |
| G4D54_RS15145 () | 3100808..3101485 | - | 678 | WP_081616018.1 | zinc ribbon domain-containing protein | - |
| G4D54_RS15150 () | 3101622..3101843 | - | 222 | WP_038274591.1 | recombinase family protein | - |
| G4D54_RS15155 () | 3102457..3104133 | - | 1677 | WP_168389014.1 | Tn3 family transposase TnpR_ISAcsp1 | Transposase |
| G4D54_RS15160 () | 3104234..3104386 | - | 153 | WP_003426199.1 | hypothetical protein | - |
| G4D54_RS15165 () | 3104875..3105285 | - | 411 | WP_003426191.1 | sigma-70 family RNA polymerase sigma factor | - |
| G4D54_RS15175 () | 3105809..3107128 | - | 1320 | WP_009889841.1 | HAMP domain-containing histidine kinase | - |
| G4D54_RS15180 () | 3107125..3107778 | - | 654 | WP_009889840.1 | Transcriptional regulatory protein QseB | VF |
| G4D54_RS15185 () | 3107876..3109252 | - | 1377 | WP_021371265.1 | ABC transporter permease | - |
| G4D54_RS15190 () | 3109252..3109908 | - | 657 | WP_003426165.1 | putative ABC transporter ATP-binding protein | VF |
| G4D54_RS15195 () | 3109918..3111195 | - | 1278 | WP_021371264.1 | ABC transporter permease | - |
| G4D54_RS15200 () | 3111214..3112104 | - | 891 | WP_118003029.1 | 4Fe-4S binding protein | - |
| G4D54_RS15205 () | 3112271..3113428 | - | 1158 | WP_168389015.1 | TlpA family protein disulfide reductase | - |
| G4D54_RS15210 () | 3113737..3114087 | + | 351 | WP_000013387.1 | plasmid mobilization relaxosome protein MobC | - |
| G4D54_RS15215 () | 3114093..3115424 | + | 1332 | WP_001018668.1 | relaxase/mobilization nuclease domain-containing protein | - |
| G4D54_RS15220 () | 3115448..3115945 | - | 498 | WP_001129326.1 | TIR domain-containing protein | - |
| G4D54_RS15225 () | 3115946..3117367 | - | 1422 | WP_000905445.1 | SIR2 family protein | - |
| G4D54_RS15230 () | 3117376..3118296 | - | 921 | WP_000039903.1 | type II restriction endonuclease | - |
| G4D54_RS15235 () | 3118289..3119785 | - | 1497 | WP_000975695.1 | Eco57I restriction-modification methylase domain-containing protein | - |
| G4D54_RS15240 () | 3119769..3119985 | - | 217 | Protein_2963 | helix-turn-helix transcriptional regulator | - |
| G4D54_RS15245 () | 3120132..3120794 | - | 663 | WP_001108168.1 | hypothetical protein | - |
| G4D54_RS15250 () | 3120837..3129593 | - | 8757 | WP_001222130.1 | DEAD/DEAH box helicase family protein | - |
| G4D54_RS15255 () | 3129728..3130534 | - | 807 | WP_000110196.1 | class I SAM-dependent methyltransferase | - |
| G4D54_RS15260 () | 3130599..3131641 | - | 1043 | Protein_2967 | DUF1016 family protein | - |
| G4D54_RS15265 () | 3131651..3131860 | - | 210 | WP_000651636.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | - |
| G4D54_RS15270 () | 3131944..3133650 | - | 1707 | WP_000779854.1 | DNA topoisomerase 3 | - |
| G4D54_RS15275 () | 3133750..3135315 | - | 1566 | WP_000738352.1 | DUF4366 domain-containing protein | - |
| G4D54_RS15280 () | 3135296..3135529 | - | 234 | WP_000711922.1 | hypothetical protein | - |
| G4D54_RS15285 () | 3135542..3137674 | - | 2133 | WP_118003033.1 | CHAP domain-containing protein | - |
| G4D54_RS15290 () | 3137679..3140108 | - | 2430 | WP_000676877.1 | ATP-binding protein | - |
| G4D54_RS15295 () | 3140020..3140409 | - | 390 | WP_000332196.1 | PrgI family protein | - |
| G4D54_RS15300 () | 3140413..3140673 | - | 261 | WP_001042372.1 | hypothetical protein | - |
| G4D54_RS15305 () | 3140691..3141554 | - | 864 | WP_000466899.1 | hypothetical protein | - |
| G4D54_RS15310 () | 3141574..3141789 | - | 216 | WP_000394208.1 | Maff2 family protein | - |
| G4D54_RS15315 () | 3141793..3142104 | - | 312 | WP_000807045.1 | hypothetical protein | - |
| G4D54_RS15320 () | 3142272..3143054 | - | 783 | WP_210548309.1 | TraM recognition domain-containing protein | - |
| G4D54_RS15325 () | 3143171..3143536 | - | 366 | WP_055195003.1 | hypothetical protein | - |
| G4D54_RS15330 () | 3143615..3143809 | - | 195 | WP_002596333.1 | transposon-encoded TnpW family protein | - |
| G4D54_RS15335 () | 3143853..3144716 | - | 864 | WP_168389016.1 | ATP-binding protein | - |
| G4D54_RS15340 () | 3144713..3145447 | - | 735 | WP_168389017.1 | phage replisome organizer N-terminal domain-containing protein | - |
| G4D54_RS15345 () | 3145561..3145959 | - | 399 | WP_112148958.1 | cysteine-rich VLP domain-containing protein | - |
| G4D54_RS15350 () | 3146086..3146364 | + | 279 | WP_005924829.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | Antitoxin Detail |
| G4D54_RS15355 () | 3146361..3146651 | + | 291 | WP_002596328.1 | type II toxin-antitoxin system YafQ family toxin | Toxin Detail |
| G4D54_RS15360 () | 3146759..3148204 | - | 1446 | WP_168389018.1 | MobA/MobL family protein | - |
| G4D54_RS15365 () | 3148391..3148681 | - | 291 | WP_062808218.1 | DUF3847 domain-containing protein | - |
| G4D54_RS15370 () | 3148710..3149171 | - | 462 | WP_015528452.1 | sigma-70 family RNA polymerase sigma factor | - |
| G4D54_RS15375 () | 3149182..3149634 | - | 453 | WP_168389073.1 | RNA polymerase subunit sigma-24 | - |
| G4D54_RS15380 () | 3149738..3150151 | - | 414 | WP_168389019.1 | sigma-70 family RNA polymerase sigma factor | - |
| G4D54_RS15385 () | 3150629..3151000 | - | 372 | WP_168389074.1 | metal-dependent transcriptional regulator | - |
| G4D54_RS15390 () | 3151003..3152502 | - | 1500 | WP_009589164.1 | Putative HMP/thiamine import ATP-binding protein YkoD | VF |
| G4D54_RS15395 () | 3152513..3153241 | - | 729 | WP_168389020.1 | energy-coupling factor transporter transmembrane protein EcfT | - |
| G4D54_RS15400 () | 3153241..3153828 | - | 588 | WP_009589171.1 | MptD family putative ECF transporter S component | - |
| G4D54_RS15405 () | 3153847..3155595 | - | 1749 | WP_168389021.1 | ABC transporter ATP-binding protein/permease | - |
| G4D54_RS15410 () | 3155592..3157340 | - | 1749 | WP_168389022.1 | Putative multidrug export ATP-binding/permease protein | VF |
| G4D54_RS15415 () | 3157425..3157637 | - | 213 | WP_144095540.1 | cysteine-rich KTR domain-containing protein | - |
| G4D54_RS15420 () | 3157657..3158274 | - | 618 | WP_168389023.1 | TetR/AcrR family transcriptional regulator | - |
| G4D54_RS15425 () | 3158462..3158818 | - | 357 | WP_168389024.1 | TnpV protein | - |
| G4D54_RS15430 () | 3158845..3160725 | - | 1881 | WP_210548276.1 | hypothetical protein ; Integrase | Integrase |
| G4D54_RS23185 () | 3160798..3161802 | - | 1005 | WP_210548278.1 | type IV secretory system conjugative DNA transfer family protein | - |
| G4D54_RS15435 () | 3161799..3162284 | - | 486 | WP_000606560.1 | hypothetical protein ; Integrase | Integrase |
| G4D54_RS15440 () | 3162281..3163132 | - | 852 | WP_001031149.1 | ATP-binding protein | - |
| G4D54_RS15445 () | 3163129..3163899 | - | 771 | WP_000344980.1 | replication initiator protein A | - |
| G4D54_RS15450 () | 3164010..3164528 | - | 519 | WP_001267113.1 | ClbS/DfsB family four-helix bundle protein | - |
| G4D54_RS15455 () | 3164568..3164849 | - | 282 | WP_001267282.1 | hypothetical protein | - |
| G4D54_RS23190 () | 3164868..3165158 | - | 291 | WP_210548310.1 | 23S rRNA methyltransferase | - |
| G4D54_RS15460 () | 3165150..3166502 | - | 1353 | Protein_3009 | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | - |
| G4D54_RS15465 () | 3166489..3167106 | - | 618 | WP_002609824.1 | HAD family phosphatase | - |
| G4D54_RS15470 () | 3167325..3168239 | - | 915 | WP_002609823.1 | sulfite exporter TauE/SafE family protein | - |
| G4D54_RS15475 () | 3168459..3169265 | - | 807 | WP_002609821.1 | pyrroline-5-carboxylate reductase | - |
| G4D54_RS15480 () | 3169295..3171676 | - | 2382 | WP_002609819.1 | glycyl radical protein | - |
| G4D54_RS15485 () | 3171680..3172594 | - | 915 | WP_002609817.1 | glycyl-radical enzyme activating protein | - |
| G4D54_RS15490 () | 3172591..3173166 | - | 576 | WP_002609816.1 | XRE family transcriptional regulator | - |
| G4D54_RS15495 () | 3173564..3173968 | - | 405 | WP_002609814.1 | DUF2752 domain-containing protein | - |
| G4D54_RS15500 () | 3173970..3174296 | - | 327 | WP_002609812.1 | DUF4234 domain-containing protein | - |
| G4D54_RS15505 () | 3174892..3176835 | - | 1944 | WP_002609808.1 | molecular chaperone HtpG | - |
| G4D54_RS15510 () | 3177290..3178084 | + | 795 | WP_002609807.1 | glutamate 5-kinase | - |
| G4D54_RS15515 () | 3178085..3179332 | + | 1248 | WP_002609805.1 | glutamate-5-semialdehyde dehydrogenase | - |
| G4D54_RS15520 () | 3179684..3180679 | - | 996 | WP_002609803.1 | isocitrate dehydrogenase | - |
| G4D54_RS15525 () | 3180681..3182015 | - | 1335 | WP_002609801.1 | citrate synthase | - |
| G4D54_RS15530 () | 3182136..3184058 | + | 1923 | WP_002609800.1 | aconitate hydratase | - |
| G4D54_RS15535 () | 3184503..3185823 | + | 1321 | Protein_3024 | serpin family protein | - |
| G4D54_RS15540 () | 3185966..3187276 | - | 1311 | WP_002609795.1 | MFS transporter | - |
| G4D54_RS15545 () | 3187351..3187878 | - | 528 | WP_002609793.1 | YfcE family phosphodiesterase | - |
| G4D54_RS15550 () | 3188135..3188365 | + | 231 | WP_002609791.1 | hypothetical protein | - |
| G4D54_RS15555 () | 3188740..3189336 | + | 597 | WP_002609789.1 | GNAT family N-acetyltransferase | - |
| G4D54_RS15560 () | 3189779..3190159 | - | 381 | WP_002609786.1 | hypothetical protein | - |
| G4D54_RS15565 () | 3190153..3190992 | - | 840 | WP_002609785.1 | alpha/beta hydrolase | - |
| G4D54_RS15570 () | 3191118..3191450 | + | 333 | WP_002609783.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|