MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 146417 bp
Accession: NZ_CP047059 Location: 2257089..2403505 Organism: Vibrio cholerae isolate CTMA_1441 Replicon: chromosome
Accession: NZ_CP047059 Location: 2257089..2403505 Organism: Vibrio cholerae isolate CTMA_1441 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GQX72_RS10275 () | 2252856..2253380 | + | 525 | WP_001226222.1 | inosine/xanthosine triphosphatase | - |
| GQX72_RS10280 () | 2253458..2253769 | - | 312 | WP_000250616.1 | trp operon repressor | - |
| GQX72_RS10285 () | 2253824..2255770 | - | 1947 | WP_000197615.1 | murein transglycosylase | - |
| GQX72_RS10290 () | 2256132..2257799 | + | 1668 | WP_000852865.1 | energy-dependent translational throttle protein EttA | - |
| GQX72_RS10295 () | 2257970..2258341 | + | 372 | WP_000570783.1 | PilZ domain-containing protein | - |
| GQX72_RS10300 () | 2258408..2259535 | - | 1128 | WP_000257629.1 | T-protein | VF |
| GQX72_RS10305 () | 2259548..2260621 | - | 1074 | WP_000747937.1 | 3-deoxy-7-phosphoheptulonate synthase | - |
| GQX72_RS10310 () | 2260863..2262539 | + | 1677 | WP_000364257.1 | Sensor histidine kinase BtsS | VF |
| GQX72_RS10315 () | 2262549..2263262 | + | 714 | WP_000947378.1 | Transcriptional regulatory protein BtsR | VF |
| GQX72_RS10320 () | 2263289..2264281 | - | 993 | WP_000529115.1 | beta-N-acetylhexosaminidase | - |
| GQX72_RS10325 () | 2264387..2265499 | + | 1113 | WP_000840717.1 | anhydro-N-acetylmuramic acid kinase | - |
| GQX72_RS10330 () | 2265517..2266440 | + | 924 | WP_000180252.1 | N-acetylmuramic acid 6-phosphate etherase | - |
| GQX72_RS10335 () | 2266464..2268260 | - | 1797 | WP_000544193.1 | sodium:proton antiporter | - |
| GQX72_RS10340 () | 2268279..2268620 | - | 342 | WP_001883835.1 | DUF2799 domain-containing protein | - |
| GQX72_RS10345 () | 2268873..2270357 | + | 1485 | WP_000964317.1 | carbon starvation protein A | - |
| GQX72_RS10350 () | 2270494..2271456 | - | 963 | WP_001883831.1 | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase | - |
| GQX72_RS10355 () | 2271491..2271925 | - | 435 | WP_001068088.1 | FKBP-type peptidyl-prolyl cis-trans isomerase | - |
| GQX72_RS10360 () | 2272088..2272603 | - | 516 | WP_000071968.1 | Lipoprotein signal peptidase | VF |
| GQX72_RS10365 () | 2272619..2275468 | - | 2850 | WP_000006088.1 | isoleucine--tRNA ligase | - |
| GQX72_RS10370 () | 2275499..2276467 | - | 969 | WP_000420406.1 | bifunctional riboflavin kinase/FAD synthetase | - |
| GQX72_RS10375 () | 2276536..2278098 | - | 1563 | WP_001911253.1 | murein biosynthesis integral membrane protein MurJ | - |
| GQX72_RS10380 () | 2278356..2278616 | + | 261 | WP_000002742.1 | 30S ribosomal protein S20 | - |
| GQX72_RS10385 () | 2278685..2278987 | - | 303 | WP_001053149.1 | metalloregulator ArsR/SmtB family transcription factor | - |
| GQX72_RS10390 () | 2279210..2280100 | - | 891 | WP_000018876.1 | Transcriptional activator protein NhaR | VF |
| GQX72_RS10395 () | 2280495..2281643 | + | 1149 | WP_000609761.1 | Na/Pi cotransporter family protein | - |
| GQX72_RS10400 () | 2281736..2282587 | - | 852 | WP_001250353.1 | thymidylate synthase | - |
| GQX72_RS10405 () | 2282597..2283412 | - | 816 | WP_001135560.1 | prolipoprotein diacylglyceryl transferase | - |
| GQX72_RS10410 () | 2283441..2284235 | - | 795 | WP_001019422.1 | sulfite exporter TauE/SafE family protein | - |
| GQX72_RS10415 () | 2284245..2286491 | - | 2247 | WP_159287528.1 | phosphoenolpyruvate--protein phosphotransferase | - |
| GQX72_RS10420 () | 2286494..2287012 | - | 519 | WP_001911254.1 | RNA pyrophosphohydrolase | - |
| GQX72_RS10425 () | 2287643..2288308 | + | 666 | WP_000801223.1 | DNA mismatch repair endonuclease MutH | - |
| GQX72_RS10430 () | 2288525..2289559 | + | 1035 | WP_001200442.1 | NADP(H)-dependent aldo-keto reductase | - |
| GQX72_RS10435 () | 2289597..2289848 | - | 252 | WP_001249919.1 | hypothetical protein | - |
| GQX72_RS10445 () | 2290426..2291760 | - | 1335 | WP_000107102.1 | Transcriptional regulatory protein ZraR | VF |
| GQX72_RS10450 () | 2292034..2293566 | - | 1533 | WP_000128764.1 | lysine--tRNA ligase | - |
| GQX72_RS10460 () | 2294865..2296178 | - | 1314 | WP_000815019.1 | branched-chain amino acid transport system II carrier protein | - |
| GQX72_RS10465 () | 2296487..2297209 | + | 723 | WP_000856169.1 | tRNA1(Val) (adenine(37)-N6)-methyltransferase | - |
| GQX72_RS10470 () | 2297297..2298568 | + | 1272 | WP_000597951.1 | ATP-dependent RNA helicase SrmB | - |
| GQX72_RS10475 () | 2298690..2300279 | - | 1590 | WP_000013192.1 | peptide chain release factor 3 | - |
| GQX72_RS10480 () | 2300536..2301183 | - | 648 | WP_000854920.1 | LexA family transcriptional regulator | - |
| GQX72_RS10485 () | 2301301..2301552 | + | 252 | WP_000451746.1 | helix-turn-helix domain-containing protein | - |
| GQX72_RS10490 () | 2301608..2302477 | + | 870 | WP_001205850.1 | hypothetical protein | - |
| GQX72_RS10495 () | 2302518..2303126 | + | 609 | WP_001918295.1 | hypothetical protein | - |
| GQX72_RS10500 () | 2303113..2303661 | + | 549 | WP_000848909.1 | lytic transglycosylase domain-containing protein | - |
| GQX72_RS10505 () | 2303658..2303957 | + | 300 | WP_000210564.1 | flagellar transcriptional regulator FlhD | - |
| GQX72_RS10510 () | 2303954..2304487 | + | 534 | WP_000566755.1 | hypothetical protein | - |
| GQX72_RS10515 () | 2304545..2304976 | + | 432 | WP_000183214.1 | hypothetical protein | - |
| GQX72_RS10520 () | 2305009..2308578 | - | 3570 | WP_000263683.1 | conjugal transfer protein TraG N-terminal domain-containing protein | - |
| GQX72_RS10525 () | 2308582..2309970 | - | 1389 | WP_000755289.1 | conjugal transfer protein TraH | - |
| GQX72_RS10530 () | 2309973..2310917 | - | 945 | WP_001260107.1 | thioredoxin family protein | - |
| GQX72_RS10535 () | 2311174..2312133 | - | 960 | WP_000198593.1 | Tyrosine recombinase XerD ; Integrase | Integrase |
| GQX72_RS10540 () | 2312421..2312894 | + | 474 | WP_000777554.1 | Dihydrofolate reductase type 1 | ARG |
| GQX72_RS10545 () | 2313029..2313424 | + | 396 | WP_000096366.1 | hypothetical protein | - |
| GQX72_RS10550 () | 2313622..2314032 | + | 411 | WP_000592337.1 | helix-turn-helix transcriptional regulator | - |
| GQX72_RS10555 () | 2314169..2314465 | + | 297 | WP_001919795.1 | DUF1801 domain-containing protein | - |
| GQX72_RS10560 () | 2314565..2315266 | + | 702 | WP_001901434.1 | helix-turn-helix transcriptional regulator | - |
| GQX72_RS10565 () | 2315263..2315667 | - | 405 | WP_000023761.1 | VOC family protein | - |
| GQX72_RS10570 () | 2315939..2316646 | - | 708 | WP_000989526.1 | hypothetical protein | - |
| GQX72_RS10575 () | 2316736..2317809 | - | 1074 | WP_001207590.1 | toprim domain-containing protein | - |
| GQX72_RS10580 () | 2317900..2318241 | - | 342 | WP_001081787.1 | hypothetical protein | - |
| GQX72_RS10585 () | 2318241..2318738 | - | 498 | WP_000797297.1 | DNA repair protein RadC | - |
| GQX72_RS10590 () | 2318823..2320478 | - | 1656 | WP_001016320.1 | VWA domain-containing protein | - |
| GQX72_RS10595 () | 2320548..2320988 | - | 441 | WP_001192023.1 | hypothetical protein | - |
| GQX72_RS10600 () | 2321050..2322003 | - | 954 | WP_000027441.1 | DUF3150 domain-containing protein | - |
| GQX72_RS10605 () | 2322102..2322869 | - | 768 | WP_000970189.1 | hypothetical protein | - |
| GQX72_RS10610 () | 2322869..2323828 | - | 960 | WP_000139695.1 | CbbQ/NirQ/NorQ C-terminal domain-containing protein | - |
| GQX72_RS10615 () | 2324038..2325054 | - | 1017 | WP_000862956.1 | YqaJ viral recombinase family protein | - |
| GQX72_RS18980 () | 2325115..2325258 | - | 144 | WP_000167277.1 | hypothetical protein | - |
| GQX72_RS10620 () | 2325340..2326158 | - | 819 | WP_000414662.1 | phage recombination protein Bet | - |
| GQX72_RS10625 () | 2326238..2326657 | - | 420 | WP_000795985.1 | single-stranded DNA-binding protein | - |
| GQX72_RS10630 () | 2326673..2326999 | - | 327 | WP_000455723.1 | hypothetical protein | - |
| GQX72_RS10635 () | 2327367..2327969 | + | 603 | WP_000035785.1 | hypothetical protein | - |
| GQX72_RS10640 () | 2328078..2328761 | + | 684 | WP_001082313.1 | endonuclease | - |
| GQX72_RS10645 () | 2328992..2330008 | + | 1017 | WP_001918293.1 | ATP-binding protein | - |
| GQX72_RS10650 () | 2330116..2331615 | + | 1500 | WP_001920874.1 | IS21 family transposase ISCte8 | Transposase |
| GQX72_RS10655 () | 2331605..2332360 | + | 756 | WP_000546748.1 | IS21 family transposase ISAlde2 | Transposase |
| GQX72_RS10660 () | 2332491..2334056 | + | 1566 | WP_001918292.1 | hypothetical protein | - |
| GQX72_RS10665 () | 2334147..2337839 | - | 3693 | WP_000805082.1 | conjugal transfer protein TraN | - |
| GQX72_RS10670 () | 2337842..2338870 | - | 1029 | WP_000735886.1 | TraU family protein | - |
| GQX72_RS10675 () | 2338854..2339978 | - | 1125 | WP_001189235.1 | hypothetical protein | - |
| GQX72_RS10680 () | 2339989..2340501 | - | 513 | WP_001166558.1 | S26 family signal peptidase | - |
| GQX72_RS10685 () | 2340485..2340832 | - | 348 | WP_001044650.1 | hypothetical protein | - |
| GQX72_RS10690 () | 2340825..2343224 | - | 2400 | WP_000648042.1 | type IV secretion system protein TraC | - |
| GQX72_RS10695 () | 2343224..2343916 | - | 693 | WP_001228926.1 | DsbC family protein | - |
| GQX72_RS10700 () | 2344048..2344986 | - | 939 | WP_000356587.1 | nucleotidyl transferase AbiEii/AbiGii toxin family protein | Toxin Detail |
| GQX72_RS10705 () | 2344979..2345770 | - | 792 | WP_000095578.1 | type IV toxin-antitoxin system AbiEi family antitoxin | Antitoxin Detail |
| GQX72_RS10710 () | 2345991..2346377 | - | 387 | WP_000180223.1 | hypothetical protein | - |
| GQX72_RS10715 () | 2346374..2346946 | - | 573 | WP_001944091.1 | type IV conjugative transfer system lipoprotein TraV | - |
| GQX72_RS10720 () | 2347021..2348310 | - | 1290 | WP_000647305.1 | TraB/VirB10 family protein | - |
| GQX72_RS10725 () | 2348313..2349209 | - | 897 | WP_001911237.1 | type-F conjugative transfer system secretin TraK | - |
| GQX72_RS10730 () | 2349193..2349819 | - | 627 | WP_000667170.1 | hypothetical protein | - |
| GQX72_RS10735 () | 2349816..2350097 | - | 282 | WP_000433891.1 | type IV conjugative transfer system protein TraL | - |
| GQX72_RS10745 () | 2350386..2350973 | + | 588 | WP_001167482.1 | hypothetical protein | - |
| GQX72_RS10750 () | 2351000..2351635 | - | 636 | WP_000033757.1 | DUF4400 domain-containing protein | - |
| GQX72_RS10755 () | 2351622..2352182 | - | 561 | WP_000546514.1 | hypothetical protein | - |
| GQX72_RS10760 () | 2352192..2354012 | - | 1821 | WP_000661888.1 | conjugative transfer system coupling protein TraD | - |
| GQX72_RS10765 () | 2354061..2356211 | - | 2151 | WP_000475916.1 | TraI domain-containing protein | - |
| GQX72_RS10770 () | 2356333..2357148 | - | 816 | WP_001125250.1 | abortive infection family protein | - |
| GQX72_RS10775 () | 2357183..2357953 | - | 771 | WP_000158025.1 | hypothetical protein | - |
| GQX72_RS10780 () | 2357980..2360031 | - | 2052 | WP_000279702.1 | protease Lon-related BREX system protein BrxL | - |
| GQX72_RS10785 () | 2360070..2362373 | - | 2304 | WP_000567536.1 | PglZ domain-containing protein | - |
| GQX72_RS10790 () | 2362386..2366126 | - | 3741 | WP_000779609.1 | BREX-1 system adenine-specific DNA-methyltransferase PglX | - |
| GQX72_RS10795 () | 2366131..2369820 | - | 3690 | WP_000152592.1 | BREX system P-loop protein BrxC | - |
| GQX72_RS10800 () | 2369833..2370381 | - | 549 | WP_001115853.1 | hypothetical protein | - |
| GQX72_RS10805 () | 2370365..2371165 | - | 801 | WP_000653856.1 | DUF1819 family protein | - |
| GQX72_RS10810 () | 2371183..2372103 | - | 921 | WP_000180270.1 | WYL domain-containing protein | - |
| GQX72_RS10815 () | 2372421..2372720 | - | 300 | WP_000284114.1 | hypothetical protein | - |
| GQX72_RS10820 () | 2372808..2373713 | - | 906 | WP_000196209.1 | DNA polymerase III subunit epsilon | - |
| GQX72_RS10825 () | 2374097..2374354 | - | 258 | WP_000182836.1 | hypothetical protein | - |
| GQX72_RS10830 () | 2374353..2374802 | + | 450 | WP_000116661.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| GQX72_RS10835 () | 2374810..2375043 | + | 234 | Protein_2082 | DNA polymerase V subunit UmuC | - |
| GQX72_RS10840 () | 2375232..2375732 | + | 501 | Protein_2083 | site-specific integrase | - |
| GQX72_RS10845 () | 2375793..2377004 | + | 1212 | WP_001122813.1 | IS256 family transposase ISSod18 | Transposase |
| GQX72_RS10850 () | 2377041..2378348 | - | 1308 | Protein_2085 | Tn3 family transposase TnpA_ISShfr9 | Transposase |
| GQX72_RS10860 () | 2378819..2379634 | + | 816 | WP_001043260.1 | Dihydropteroate synthase | ARG |
| GQX72_RS10865 () | 2379695..2380498 | + | 804 | WP_001082316.1 | Aminoglycoside 3'-phosphotransferase | ARG |
| GQX72_RS10870 () | 2380498..2381334 | + | 837 | WP_000480968.1 | hypothetical protein | ARG |
| GQX72_RS10875 () | 2381441..2381845 | - | 405 | Protein_2089 | IS91 family transposase ISPps1 | Transposase |
| GQX72_RS10880 () | 2381957..2382262 | - | 306 | WP_001255015.1 | HTH-type transcriptional regulator CynR | VF |
| GQX72_RS10885 () | 2382290..2383504 | - | 1215 | WP_000214119.1 | Bicyclomycin resistance protein | ARG |
| GQX72_RS18985 () | 2383721..2384167 | - | 447 | Protein_2092 | DUF3363 domain-containing protein | - |
| GQX72_RS10895 () | 2384636..2386129 | - | 1494 | WP_001120888.1 | IS91 family transposase ISVsa3 | Transposase |
| GQX72_RS18990 () | 2386241..2386432 | - | 192 | Protein_2094 | hypothetical protein | - |
| GQX72_RS10900 () | 2386547..2389525 | - | 2979 | WP_000985631.1 | Tn3 family transposase TnpA_ISShfr9 | Transposase |
| GQX72_RS10905 () | 2389663..2390241 | - | 579 | Protein_2096 | Tn3 family transposase TnpA_IS3000 | Transposase |
| GQX72_RS10910 () | 2390645..2391688 | + | 1044 | Protein_2097 | translesion error-prone DNA polymerase V subunit UmuC | - |
| GQX72_RS10915 () | 2391699..2392142 | - | 444 | WP_000348524.1 | hypothetical protein | - |
| GQX72_RS10920 () | 2392607..2393581 | + | 975 | WP_000497807.1 | ParM/StbA family protein | - |
| GQX72_RS10925 () | 2393584..2393853 | + | 270 | WP_001995600.1 | hypothetical protein | - |
| GQX72_RS10930 () | 2393855..2395096 | + | 1242 | WP_001218618.1 | Prophage integrase IntS ; Integrase | Integrase |
| GQX72_RS10935 () | 2395226..2397244 | - | 2019 | WP_000211147.1 | ATP-binding protein | - |
| GQX72_RS10940 () | 2397390..2397578 | - | 189 | WP_000127615.1 | hypothetical protein | - |
| GQX72_RS10945 () | 2398319..2400376 | + | 2058 | WP_000160066.1 | putative signaling protein | VF |
| GQX72_RS10950 () | 2400365..2400814 | - | 450 | WP_000214238.1 | Ribosomal-protein-alanine acetyltransferase | VF |
| GQX72_RS10955 () | 2400811..2401218 | - | 408 | WP_000953212.1 | DNA polymerase III subunit psi | - |
| GQX72_RS10960 () | 2401329..2401832 | - | 504 | WP_000908540.1 | N-acetyltransferase | - |
| GQX72_RS10965 () | 2401816..2402343 | - | 528 | WP_000932672.1 | SCP2 domain-containing protein | - |
| GQX72_RS10970 () | 2402576..2404630 | + | 2055 | WP_001111411.1 | bifunctional diguanylate cyclase/phosphodiesterase | - |
| GQX72_RS10975 () | 2404738..2405751 | + | 1014 | WP_000421327.1 | U32 family peptidase | - |
| GQX72_RS10980 () | 2405763..2406641 | + | 879 | WP_000872504.1 | U32 family peptidase | - |
| GQX72_RS10985 () | 2406694..2408031 | - | 1338 | WP_000981941.1 | sodium-coupled multidrug efflux MATE transporter VcrM | - |
| GQX72_RS10990 () | 2408078..2408485 | - | 408 | WP_000887847.1 | MarR family transcriptional regulator | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|