MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 118438 bp
Accession: NZ_CP046413 Location: 1..118438 Organism: Vibrio parahaemolyticus strain 19-021-D1 Replicon: plasmid pVp_Kor-D1-1
Accession: NZ_CP046413 Location: 1..118438 Organism: Vibrio parahaemolyticus strain 19-021-D1 Replicon: plasmid pVp_Kor-D1-1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GNY17_RS26790 () | 832..1581 | + | 750 | WP_025789494.1 | hypothetical protein | - |
| GNY17_RS26795 () | 1581..2636 | + | 1056 | WP_025499517.1 | hypothetical protein | - |
| GNY17_RS26800 () | 2636..3556 | + | 921 | WP_025789495.1 | OmpA family protein | - |
| GNY17_RS26805 () | 3560..6331 | + | 2772 | WP_140065301.1 | hypothetical protein | - |
| GNY17_RS26810 () | 6590..7222 | + | 633 | WP_129194440.1 | hypothetical protein | - |
| GNY17_RS26815 () | 7288..7653 | + | 366 | WP_025789498.1 | hypothetical protein | - |
| GNY17_RS26820 () | 8113..8331 | - | 219 | WP_086597967.1 | hypothetical protein | VF |
| GNY17_RS26825 () | 8475..8618 | - | 144 | WP_156216758.1 | hypothetical protein | - |
| GNY17_RS26830 () | 8615..9706 | - | 1092 | Protein_9 | IS3 family transposase | - |
| GNY17_RS26835 () | 10148..11245 | + | 1098 | WP_086597966.1 | Outer membrane protein A | VF |
| GNY17_RS26840 () | 11263..16149 | + | 4887 | WP_158501038.1 | Ig-like domain-containing protein | - |
| GNY17_RS27955 () | 16787..17269 | - | 483 | Protein_12 | DDE-type integrase/transposase/recombinase | - |
| GNY17_RS26845 () | 17484..18077 | + | 594 | WP_157802688.1 | transglutaminase-like cysteine peptidase | - |
| GNY17_RS27960 () | 19253..19543 | + | 291 | Protein_14 | transposase | - |
| GNY17_RS26855 () | 19987..20871 | + | 885 | WP_156216760.1 | metallophosphoesterase | - |
| GNY17_RS26860 () | 20877..23903 | - | 3027 | WP_024700076.1 | Tn3 family transposase TnpA_ISShfr9 | Transposase |
| GNY17_RS26865 () | 24081..24728 | + | 648 | WP_024700075.1 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| GNY17_RS27965 () | 25785..26126 | + | 342 | WP_080265102.1 | hypothetical protein | - |
| GNY17_RS26875 () | 26110..26538 | + | 429 | WP_024700073.1 | hypothetical protein | - |
| GNY17_RS26880 () | 26686..28896 | - | 2211 | WP_140103960.1 | topoisomerase DNA-binding C4 zinc finger domain-containing protein | - |
| GNY17_RS26885 () | 28962..29702 | - | 741 | WP_029865549.1 | hypothetical protein | - |
| GNY17_RS26890 () | 29699..30238 | - | 540 | WP_102586247.1 | DUF1845 domain-containing protein | - |
| GNY17_RS26895 () | 30269..32230 | - | 1962 | WP_102586246.1 | TraM recognition domain-containing protein | - |
| GNY17_RS26900 () | 33224..33631 | - | 408 | WP_149151352.1 | H-NS histone family protein | - |
| GNY17_RS26905 () | 33963..34207 | - | 245 | Protein_25 | hypothetical protein | - |
| GNY17_RS26910 () | 34219..34932 | - | 714 | WP_031431352.1 | hypothetical protein | - |
| GNY17_RS26915 () | 34925..35215 | - | 291 | WP_031500709.1 | hypothetical protein | - |
| GNY17_RS26920 () | 35320..36330 | + | 1011 | WP_023622750.1 | hypothetical protein | - |
| GNY17_RS26925 () | 36261..36656 | - | 396 | WP_029559350.1 | hypothetical protein | - |
| GNY17_RS26930 () | 36667..37248 | - | 582 | WP_031500706.1 | hypothetical protein | - |
| GNY17_RS26935 () | 37309..37824 | - | 516 | WP_031431357.1 | Type IV secretion system protein virB1 | VF |
| GNY17_RS26940 () | 37838..38344 | - | 507 | WP_051850355.1 | conjugative transfer signal peptidase TraF | - |
| GNY17_RS26945 () | 39228..39380 | - | 153 | WP_017449302.1 | Hok/Gef family protein | - |
| GNY17_RS26950 () | 39701..39970 | - | 270 | WP_017449301.1 | hypothetical protein | - |
| GNY17_RS26955 () | 40114..41148 | - | 1035 | WP_149151351.1 | trypsin-like serine protease | - |
| GNY17_RS26960 () | 41259..41672 | - | 414 | WP_023623364.1 | hypothetical protein | - |
| GNY17_RS26965 () | 41688..42647 | - | 960 | WP_149151350.1 | type II secretion system GspH family protein | - |
| GNY17_RS26970 () | 42644..43171 | - | 528 | WP_024700480.1 | hypothetical protein | - |
| GNY17_RS26975 () | 43171..43665 | - | 495 | WP_031858790.1 | hypothetical protein | VF |
| GNY17_RS26980 () | 43769..44773 | - | 1005 | WP_149151349.1 | hypothetical protein | - |
| GNY17_RS26985 () | 44770..46392 | - | 1623 | WP_149151348.1 | Flp pilus assembly complex ATPase component TadA | - |
| GNY17_RS26990 () | 46389..47030 | - | 642 | WP_156216762.1 | hypothetical protein | - |
| GNY17_RS26995 () | 47027..48157 | - | 1131 | WP_156216764.1 | hypothetical protein | - |
| GNY17_RS27000 () | 48157..49644 | - | 1488 | WP_156216773.1 | hypothetical protein | VF |
| GNY17_RS27005 () | 49659..50531 | - | 873 | WP_140130641.1 | hypothetical protein | - |
| GNY17_RS27010 () | 50544..51800 | - | 1257 | WP_156216765.1 | Type IV secretion system protein virB10 | VF |
| GNY17_RS27015 () | 51793..52215 | - | 423 | WP_017449288.1 | hypothetical protein | - |
| GNY17_RS27020 () | 52215..53087 | - | 873 | WP_156216767.1 | P-type conjugative transfer protein TrbG | - |
| GNY17_RS27025 () | 53096..53770 | - | 675 | WP_078231497.1 | type IV secretion system protein | - |
| GNY17_RS27030 () | 53780..53977 | - | 198 | WP_023623311.1 | hypothetical protein | - |
| GNY17_RS27035 () | 53988..55301 | - | 1314 | WP_156216769.1 | P-type conjugative transfer protein TrbL | - |
| GNY17_RS27040 () | 55298..56245 | - | 948 | WP_029864803.1 | Type IV secretion system protein VirB11 | VF |
| GNY17_RS27045 () | 56256..57014 | - | 759 | WP_149151359.1 | P-type conjugative transfer protein TrbJ | - |
| GNY17_RS27050 () | 57011..59425 | - | 2415 | WP_149151358.1 | DUF87 domain-containing protein | - |
| GNY17_RS27055 () | 59466..59780 | - | 315 | WP_149151357.1 | VirB3 family type IV secretion system protein | - |
| GNY17_RS27060 () | 59791..60120 | - | 330 | WP_044140172.1 | TrbC/VirB2 family protein | - |
| GNY17_RS27065 () | 60171..60323 | - | 153 | WP_032072624.1 | hypothetical protein | - |
| GNY17_RS27070 () | 60401..60697 | + | 297 | WP_149151356.1 | hypothetical protein | - |
| GNY17_RS27075 () | 61033..61680 | + | 648 | WP_025983428.1 | XRE family transcriptional regulator | - |
| GNY17_RS27080 () | 62147..62980 | + | 834 | WP_049873589.1 | hypothetical protein | - |
| GNY17_RS27085 () | 64486..64677 | - | 192 | WP_078231584.1 | helix-turn-helix domain-containing protein | - |
| GNY17_RS27090 () | 65392..66591 | + | 1200 | WP_017449270.1 | ParA family protein | - |
| GNY17_RS27095 () | 66591..67661 | + | 1071 | WP_025792424.1 | ParB/RepB/Spo0J family partition protein | - |
| GNY17_RS27100 () | 67655..67945 | - | 291 | Protein_64 | transposase | - |
| GNY17_RS27105 () | 68155..69207 | - | 1053 | WP_156216771.1 | hypothetical protein | - |
| GNY17_RS27110 () | 69405..69833 | - | 429 | WP_024700073.1 | hypothetical protein | - |
| GNY17_RS27970 () | 69817..70158 | - | 342 | WP_080265102.1 | hypothetical protein | - |
| GNY17_RS27120 () | 71215..71862 | - | 648 | WP_024700075.1 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| GNY17_RS27125 () | 72040..75066 | + | 3027 | WP_024700076.1 | Tn3 family transposase TnpA_ISShfr9 | Transposase |
| GNY17_RS27130 () | 75378..76520 | - | 1143 | WP_102586252.1 | GIY-YIG nuclease family protein | - |
| GNY17_RS27135 () | 77139..77348 | + | 210 | WP_023623303.1 | hypothetical protein | - |
| GNY17_RS27140 () | 77378..77671 | + | 294 | WP_017449213.1 | hypothetical protein | - |
| GNY17_RS27145 () | 77986..78378 | - | 393 | WP_024700500.1 | hypothetical protein | - |
| GNY17_RS27150 () | 78484..78897 | - | 414 | WP_102586259.1 | antirestriction protein | - |
| GNY17_RS27155 () | 79058..79399 | - | 342 | WP_102619349.1 | hypothetical protein | - |
| GNY17_RS27160 () | 79469..80374 | - | 906 | WP_071653130.1 | DUF1738 domain-containing protein | - |
| GNY17_RS27165 () | 80530..80817 | - | 288 | WP_023625127.1 | hypothetical protein | - |
| GNY17_RS27170 () | 81172..81516 | + | 345 | WP_102586225.1 | hypothetical protein | - |
| GNY17_RS27175 () | 81997..83532 | + | 1536 | WP_023623174.1 | hypothetical protein | - |
| GNY17_RS27180 () | 83863..84465 | + | 603 | WP_023623175.1 | Tn3 family transposase TnpR_ISArsp6 | Transposase |
| GNY17_RS27185 () | 84603..84989 | + | 387 | WP_025792428.1 | hypothetical protein | - |
| GNY17_RS27190 () | 85389..85532 | + | 144 | WP_023623177.1 | hypothetical protein | - |
| GNY17_RS27195 () | 85892..87145 | + | 1254 | WP_023623178.1 | hypothetical protein | - |
| GNY17_RS27200 () | 87527..88152 | + | 626 | Protein_84 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| GNY17_RS27205 () | 88211..88435 | + | 225 | WP_025789152.1 | hypothetical protein | - |
| GNY17_RS27210 () | 88444..88650 | + | 207 | WP_023623181.1 | hypothetical protein | - |
| GNY17_RS27215 () | 88686..89006 | + | 321 | WP_025792429.1 | hypothetical protein | - |
| GNY17_RS27220 () | 90011..90315 | + | 305 | Protein_88 | hypothetical protein | - |
| GNY17_RS27225 () | 90334..91338 | + | 1005 | Protein_89 | IS91 family transposase ISVa3 | Transposase |
| GNY17_RS27230 () | 91771..92292 | + | 522 | WP_025789149.1 | outer membrane beta-barrel protein | - |
| GNY17_RS27235 () | 92435..93418 | + | 984 | WP_017449262.1 | outer membrane beta-barrel protein | - |
| GNY17_RS27240 () | 93495..93996 | + | 502 | Protein_92 | Tn3 family transposase TnpR_TnAs1 | Transposase |
| GNY17_RS27245 () | 94595..94768 | + | 174 | WP_017449264.1 | hypothetical protein | - |
| GNY17_RS27250 () | 94926..95345 | + | 420 | WP_129194448.1 | hypothetical protein | - |
| GNY17_RS27255 () | 95836..96420 | - | 585 | Protein_95 | replication initiation protein | - |
| GNY17_RS27260 () | 96800..97069 | + | 270 | Protein_96 | IS6 family transposase ISSba18 | Transposase |
| GNY17_RS27265 () | 97070..97555 | + | 486 | WP_023624637.1 | Tn3 family transposase TnpR_ISArsp6 | Transposase |
| GNY17_RS27270 () | 97656..97901 | + | 246 | WP_017449246.1 | type II toxin-antitoxin system CcdA family antitoxin | - |
| GNY17_RS27275 () | 97901..98218 | + | 318 | WP_023624638.1 | CcdB family protein | - |
| GNY17_RS27280 () | 98234..98446 | - | 213 | WP_127914006.1 | hypothetical protein | - |
| GNY17_RS27285 () | 98835..99974 | - | 1140 | WP_025789523.1 | Murein DD-endopeptidase MepM | VF |
| GNY17_RS27290 () | 100313..100489 | - | 177 | WP_153189439.1 | hypothetical protein | - |
| GNY17_RS27295 () | 100867..101166 | - | 300 | WP_023624643.1 | hypothetical protein | - |
| GNY17_RS27300 () | 101242..101490 | - | 249 | WP_025789522.1 | hypothetical protein | - |
| GNY17_RS27305 () | 101572..102504 | - | 933 | WP_023624644.1 | OmpA family protein | - |
| GNY17_RS27310 () | 103291..103725 | + | 435 | WP_023624645.1 | IS630 family transposase ISSod10 | Transposase |
| GNY17_RS27315 () | 104186..104818 | - | 633 | WP_023624646.1 | Ig-like domain-containing protein | - |
| GNY17_RS27320 () | 104784..105788 | - | 1005 | WP_158501040.1 | Ig-like domain-containing protein | - |
| GNY17_RS27325 () | 106349..106723 | - | 375 | WP_127914005.1 | hypothetical protein | - |
| GNY17_RS27330 () | 107033..107254 | + | 222 | WP_023624649.1 | hypothetical protein | - |
| GNY17_RS27335 () | 107857..108240 | + | 384 | Protein_111 | Tn3 family transposase TnpR_ISArsp6 | Transposase |
| GNY17_RS27340 () | 108235..108960 | - | 726 | WP_017449237.1 | site-specific integrase | - |
| GNY17_RS27345 () | 109411..109641 | + | 231 | WP_017449238.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | Antitoxin Detail |
| GNY17_RS27350 () | 109638..109979 | + | 342 | WP_023624650.1 | endoribonuclease MazF | Toxin Detail |
| GNY17_RS27355 () | 110282..110857 | - | 576 | WP_017449240.1 | hypothetical protein | - |
| GNY17_RS27360 () | 110857..111588 | - | 732 | WP_025789518.1 | AHH domain-containing protein | - |
| GNY17_RS27370 () | 112831..113919 | - | 1089 | WP_086370877.1 | replication initiation protein | - |
| GNY17_RS27375 () | 114253..114891 | - | 639 | Protein_118 | IS5 family transposase ISVpa3 | Transposase |
| GNY17_RS27380 () | 115259..115897 | + | 639 | WP_025789491.1 | hypothetical protein | - |
| GNY17_RS27385 () | 115975..116532 | + | 558 | WP_025789492.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|