MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 106306 bp
Accession: NZ_CP046252 Location: 192078..298383 Organism: Sphingobium sp. CAP-1 Replicon: chromosome
Accession: NZ_CP046252 Location: 192078..298383 Organism: Sphingobium sp. CAP-1 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GL174_RS00910 () | 190520..191827 | - | 1308 | WP_155178371.1 | hypothetical protein | - |
| GL174_RS00920 () | 192057..193739 | - | 1683 | WP_155178372.1 | recombinase family protein | - |
| GL174_RS00925 () | 193785..194294 | - | 510 | WP_155178374.1 | hypothetical protein | VF |
| GL174_RS00930 () | 194298..194588 | - | 291 | WP_155184405.1 | DUF1778 domain-containing protein | - |
| GL174_RS00935 () | 194705..195097 | - | 393 | WP_155178376.1 | hypothetical protein | - |
| GL174_RS00940 () | 195147..195386 | + | 240 | WP_155178378.1 | hypothetical protein | - |
| GL174_RS00945 () | 195748..196047 | + | 300 | WP_070932436.1 | DUF736 domain-containing protein | - |
| GL174_RS00950 () | 196529..197197 | + | 669 | WP_155178380.1 | DNA methylase | - |
| GL174_RS00955 () | 197240..197479 | + | 240 | WP_155178382.1 | hypothetical protein | - |
| GL174_RS00960 () | 197956..198222 | + | 267 | WP_155178384.1 | DUF2285 domain-containing protein | - |
| GL174_RS00965 () | 198680..199141 | + | 462 | WP_155184408.1 | DUF2285 domain-containing protein | - |
| GL174_RS00970 () | 199270..199536 | + | 267 | WP_060977333.1 | helix-turn-helix domain-containing protein | - |
| GL174_RS00975 () | 199533..200414 | + | 882 | WP_155178386.1 | replication initiator protein A | - |
| GL174_RS00980 () | 200740..201381 | + | 642 | WP_155178388.1 | hypothetical protein | - |
| GL174_RS00985 () | 201378..202526 | + | 1149 | WP_155178390.1 | phosphoadenosine phosphosulfate reductase family protein | - |
| GL174_RS00990 () | 202523..203869 | + | 1347 | WP_155178393.1 | DNA cytosine methyltransferase | - |
| GL174_RS00995 () | 203866..204453 | + | 588 | WP_155178395.1 | DUF2840 domain-containing protein | - |
| GL174_RS01000 () | 204450..205028 | + | 579 | WP_155178397.1 | S26 family signal peptidase | - |
| GL174_RS01005 () | 205009..205341 | + | 333 | WP_155178399.1 | DUF736 domain-containing protein | - |
| GL174_RS01010 () | 205345..206208 | + | 864 | WP_155178401.1 | lytic transglycosylase domain-containing protein | - |
| GL174_RS01015 () | 206205..206786 | + | 582 | WP_155178403.1 | hypothetical protein | - |
| GL174_RS01020 () | 207025..208791 | + | 1767 | WP_155178405.1 | VirD2 family relaxase/mobilization nuclease | - |
| GL174_RS01025 () | 208807..210789 | + | 1983 | WP_155178407.1 | Conjugal transfer protein TraG | VF |
| GL174_RS01030 () | 210799..211227 | + | 429 | WP_155178410.1 | ribbon-helix-helix domain-containing protein | - |
| GL174_RS01035 () | 211456..212442 | + | 987 | WP_155178412.1 | Type IV secretion system protein VirB11 | VF |
| GL174_RS01040 () | 212439..212807 | + | 369 | WP_155178414.1 | TrbC/VirB2 family protein | - |
| GL174_RS01045 () | 212804..213085 | + | 282 | WP_155178416.1 | VirB3 family type IV secretion system protein | - |
| GL174_RS01050 () | 213082..215529 | + | 2448 | WP_155178418.1 | conjugal transfer protein TrbE | - |
| GL174_RS01055 () | 215526..216245 | + | 720 | WP_155178420.1 | P-type conjugative transfer protein TrbJ | - |
| GL174_RS01060 () | 216261..216650 | + | 390 | WP_155178422.1 | putative entry exclusion protein TrbK-alt | - |
| GL174_RS01065 () | 216647..217987 | + | 1341 | WP_155178424.1 | P-type conjugative transfer protein TrbL | - |
| GL174_RS01070 () | 217994..218677 | + | 684 | WP_155178426.1 | conjugal transfer protein TrbF | - |
| GL174_RS01075 () | 218674..219696 | + | 1023 | WP_155178428.1 | P-type conjugative transfer protein TrbG | - |
| GL174_RS01080 () | 219696..220958 | + | 1263 | WP_155178430.1 | Type IV secretion system protein virB10 | VF |
| GL174_RS01085 () | 220955..221176 | + | 222 | WP_155178432.1 | DUF2274 domain-containing protein | - |
| GL174_RS01090 () | 221196..221501 | - | 306 | WP_155178434.1 | hypothetical protein | - |
| GL174_RS01095 () | 221588..222499 | - | 912 | WP_174834971.1 | LysR family transcriptional regulator | - |
| GL174_RS01100 () | 222970..224169 | - | 1200 | WP_155178438.1 | 3-oxoadipyl-CoA thiolase | - |
| GL174_RS01105 () | 224216..224809 | - | 594 | WP_155178440.1 | NAD(P)H-dependent oxidoreductase | - |
| GL174_RS01110 () | 224943..225785 | + | 843 | WP_155184411.1 | nitroreductase | - |
| GL174_RS01115 () | 225801..226340 | + | 540 | WP_155178442.1 | DUF4863 family protein | - |
| GL174_RS01120 () | 226316..227347 | - | 1032 | WP_155178443.1 | LysR family transcriptional regulator | - |
| GL174_RS01125 () | 227540..228946 | + | 1407 | WP_155178445.1 | aldehyde dehydrogenase family protein | - |
| GL174_RS01130 () | 229328..230311 | + | 984 | WP_155178447.1 | Regulatory protein PchR | VF |
| GL174_RS01135 () | 230346..231455 | - | 1110 | WP_155178449.1 | DUF2817 domain-containing protein | - |
| GL174_RS01140 () | 231475..232410 | - | 936 | WP_174834966.1 | DMT family transporter | - |
| GL174_RS01145 () | 232499..233545 | - | 1047 | WP_155178453.1 | low specificity L-threonine aldolase | - |
| GL174_RS01150 () | 233616..235232 | - | 1617 | WP_155178455.1 | GMC family oxidoreductase N-terminal domain-containing protein | - |
| GL174_RS01155 () | 235327..236793 | - | 1467 | WP_155178457.1 | aldehyde dehydrogenase family protein | - |
| GL174_RS01160 () | 236905..239094 | - | 2190 | WP_155178459.1 | TonB-dependent receptor | - |
| GL174_RS01165 () | 239252..239677 | - | 426 | WP_155178461.1 | heme-binding protein | - |
| GL174_RS01170 () | 239714..240946 | - | 1233 | WP_155178463.1 | D-amino acid dehydrogenase | - |
| GL174_RS01175 () | 241293..242003 | + | 711 | WP_155178465.1 | CoA transferase subunit A | - |
| GL174_RS01180 () | 242003..242662 | + | 660 | WP_155184414.1 | 3-oxoacid CoA-transferase subunit B | - |
| GL174_RS01185 () | 242659..243372 | + | 714 | WP_155178467.1 | protocatechuate 3,4-dioxygenase subunit beta | - |
| GL174_RS01190 () | 243365..244060 | + | 696 | WP_155178469.1 | protocatechuate 3,4-dioxygenase subunit alpha | - |
| GL174_RS01195 () | 244057..245190 | + | 1134 | WP_155178471.1 | 3-carboxy-cis,cis-muconate cycloisomerase | - |
| GL174_RS01200 () | 245203..246375 | + | 1173 | WP_155178473.1 | 3-oxoadipate enol-lactonase | - |
| GL174_RS01205 () | 246502..247671 | + | 1170 | WP_155178475.1 | MFS transporter | - |
| GL174_RS01210 () | 247856..248515 | - | 660 | WP_155184417.1 | haloacid dehalogenase type II | - |
| GL174_RS01215 () | 248896..251013 | + | 2118 | WP_155184420.1 | malate synthase G | - |
| GL174_RS01220 () | 251437..253314 | - | 1878 | WP_155178477.1 | hypothetical protein | - |
| GL174_RS01225 () | 253304..256258 | - | 2955 | WP_155178479.1 | hypothetical protein | VF |
| GL174_RS01230 () | 256293..256718 | + | 426 | WP_155178481.1 | DNA mismatch endonuclease Vsr | - |
| GL174_RS01235 () | 256682..257917 | - | 1236 | WP_155178483.1 | DNA cytosine methyltransferase | - |
| GL174_RS01240 () | 257914..258117 | - | 204 | WP_155178486.1 | MerR family transcriptional regulator | - |
| GL174_RS01245 () | 258612..259703 | - | 1092 | WP_155178488.1 | hypothetical protein | - |
| GL174_RS01250 () | 260167..260523 | + | 357 | WP_155178489.1 | hypothetical protein | - |
| GL174_RS01255 () | 260532..260876 | + | 345 | WP_155178491.1 | hypothetical protein | - |
| GL174_RS01260 () | 260873..261502 | + | 630 | WP_155178493.1 | DUF4230 domain-containing protein | - |
| GL174_RS01265 () | 261582..261926 | + | 345 | WP_155178495.1 | hypothetical protein | - |
| GL174_RS01270 () | 261994..262470 | + | 477 | WP_155178497.1 | hypothetical protein | - |
| GL174_RS01275 () | 262806..264188 | + | 1383 | WP_155178499.1 | virulence-associated E family protein | - |
| GL174_RS01280 () | 264454..265617 | + | 1164 | WP_155178501.1 | Tyrosine recombinase XerD ; Integrase | Integrase |
| GL174_RS01285 () | 265667..266008 | + | 342 | WP_155178503.1 | hypothetical protein | - |
| GL174_RS01290 () | 266421..266756 | + | 336 | WP_155184422.1 | hypothetical protein | - |
| GL174_RS01295 () | 266753..266941 | - | 189 | WP_155178505.1 | hypothetical protein | - |
| GL174_RS01300 () | 266938..267138 | - | 201 | WP_155178506.1 | hypothetical protein | - |
| GL174_RS01305 () | 267140..267931 | - | 792 | WP_155178507.1 | S1/P1 nuclease | - |
| GL174_RS01310 () | 268296..270359 | + | 2064 | WP_155178508.1 | hypothetical protein | - |
| GL174_RS01315 () | 270680..272359 | - | 1680 | WP_155178509.1 | hypothetical protein ; Integrase | Integrase |
| GL174_RS01320 () | 272378..272626 | - | 249 | WP_155178510.1 | hypothetical protein | - |
| GL174_RS01325 () | 272739..273032 | - | 294 | WP_155178511.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| GL174_RS01330 () | 273029..273298 | - | 270 | WP_155178512.1 | ribbon-helix-helix domain-containing protein | Antitoxin Detail |
| GL174_RS01335 () | 273983..276058 | + | 2076 | WP_155178514.1 | ParB/RepB/Spo0J family partition protein | - |
| GL174_RS01340 () | 276507..276821 | - | 315 | WP_155178516.1 | hypothetical protein | - |
| GL174_RS01345 () | 276900..277666 | + | 767 | WP_155178518.1 | IS5 family transposase IS427 | Transposase |
| GL174_RS01350 () | 277708..279318 | + | 1611 | WP_155178520.1 | retron Ec67 family RNA-directed DNA polymerase/endonuclease | - |
| GL174_RS01355 () | 279916..280965 | - | 1050 | WP_155178521.1 | IS110 family transposase ISCc4 | Transposase |
| GL174_RS01360 () | 281172..281471 | + | 300 | WP_155178523.1 | DUF736 domain-containing protein | - |
| GL174_RS01365 () | 281763..282605 | + | 843 | WP_155178525.1 | DUF945 domain-containing protein | - |
| GL174_RS01370 () | 282602..282757 | + | 156 | WP_155178527.1 | hypothetical protein | - |
| GL174_RS01375 () | 282761..282988 | - | 228 | WP_155178529.1 | helix-turn-helix domain-containing protein | - |
| GL174_RS01380 () | 283150..283422 | + | 273 | WP_155184424.1 | DUF2285 domain-containing protein | - |
| GL174_RS01385 () | 283569..283790 | + | 222 | WP_155178531.1 | hypothetical protein | - |
| GL174_RS01390 () | 283945..284352 | + | 408 | WP_155184426.1 | DUF2285 domain-containing protein | - |
| GL174_RS01395 () | 284481..284747 | + | 267 | WP_155178533.1 | helix-turn-helix domain-containing protein | - |
| GL174_RS01400 () | 284744..285250 | + | 507 | WP_155178535.1 | DUF2840 domain-containing protein | - |
| GL174_RS01405 () | 285247..285804 | + | 558 | WP_155178537.1 | S26 family signal peptidase | - |
| GL174_RS01410 () | 285840..286172 | + | 333 | WP_155178539.1 | DUF736 domain-containing protein | - |
| GL174_RS01415 () | 286177..287088 | + | 912 | WP_155178541.1 | lytic transglycosylase domain-containing protein | - |
| GL174_RS01420 () | 287327..289084 | + | 1758 | WP_155178543.1 | VirD2 family relaxase/mobilization nuclease | - |
| GL174_RS01425 () | 289100..291079 | + | 1980 | WP_155178545.1 | Conjugal transfer protein TraG | VF |
| GL174_RS01430 () | 291089..291490 | + | 402 | Protein_283 | CopG family transcriptional regulator | - |
| GL174_RS01435 () | 291490..291921 | - | 432 | WP_155178547.1 | hypothetical protein | - |
| GL174_RS01440 () | 292096..293082 | + | 987 | WP_155178549.1 | Type IV secretion system protein VirB11 | VF |
| GL174_RS01445 () | 293079..293411 | + | 333 | WP_155178551.1 | TrbC/VirB2 family protein | - |
| GL174_RS01450 () | 293411..293692 | + | 282 | WP_155178553.1 | VirB3 family type IV secretion system protein | - |
| GL174_RS01455 () | 293689..296178 | + | 2490 | WP_155178555.1 | conjugal transfer protein TrbE | - |
| GL174_RS01460 () | 296175..296933 | + | 759 | WP_155178557.1 | P-type conjugative transfer protein TrbJ | - |
| GL174_RS01465 () | 296939..297241 | + | 303 | WP_155178558.1 | putative entry exclusion protein TrbK-alt | - |
| GL174_RS01470 () | 297243..298553 | + | 1311 | WP_155178560.1 | P-type conjugative transfer protein TrbL | - |
| GL174_RS01475 () | 298557..299240 | + | 684 | WP_155178562.1 | conjugal transfer protein TrbF | - |
| GL174_RS01480 () | 299237..300253 | + | 1017 | WP_155178564.1 | P-type conjugative transfer protein TrbG | - |
| GL174_RS01485 () | 300250..301464 | + | 1215 | WP_155178566.1 | TrbI/VirB10 family protein | - |
| GL174_RS01490 () | 301461..301685 | + | 225 | WP_155178567.1 | DUF2274 domain-containing protein | - |
| GL174_RS01495 () | 301699..302007 | - | 309 | WP_155178569.1 | hypothetical protein | - |
| GL174_RS01500 () | 302031..302957 | - | 927 | WP_155178571.1 | LysR family transcriptional regulator | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|