MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 68539 bp
Accession: NZ_CP045636 Location: 1..68539 Organism: Yersinia pestis strain S19960127 Replicon: plasmid pCD1
Accession: NZ_CP045636 Location: 1..68539 Organism: Yersinia pestis strain S19960127 Replicon: plasmid pCD1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| S96127_RS00010 () | 700..2063 | - | 1364 | Protein_1 | type III secretion system needle length determinant YscP | - |
| S96127_RS00015 () | 2063..2526 | - | 464 | Protein_2 | type III secretion protein | - |
| S96127_RS00020 () | 2523..3841 | - | 1319 | Protein_3 | SctN family type III secretion system ATPase YscN | - |
| S96127_RS00025 () | 4039..4920 | + | 882 | WP_002212958.1 | Outer membrane protein YopN | VF |
| S96127_RS00030 () | 4901..5179 | + | 279 | WP_002212965.1 | Protein TyeA | VF |
| S96127_RS00035 () | 5166..5537 | + | 372 | WP_002229794.1 | Chaperone protein SycN | VF |
| S96127_RS00040 () | 5534..5902 | + | 369 | WP_002212969.1 | Yop proteins translocation protein X | VF |
| S96127_RS00045 () | 5899..6243 | + | 345 | WP_002229791.1 | Chaperone protein YscY | VF |
| S96127_RS00050 () | 6230..8344 | + | 2115 | WP_002212971.1 | Invasion protein InvA | VF |
| S96127_RS00055 () | 8341..8781 | + | 441 | WP_002220918.1 | hypothetical protein | VF |
| S96127_RS00060 () | 8823..9110 | + | 288 | WP_002212973.1 | hypothetical protein | VF |
| S96127_RS00065 () | 9112..10092 | + | 981 | WP_002212981.1 | Virulence-associated V antigen | VF |
| S96127_RS00070 () | 10105..10611 | + | 507 | WP_002222758.1 | Chaperone protein IpgC | VF |
| S96127_RS00075 () | 10589..11794 | + | 1206 | WP_002212985.1 | Protein YopB | VF |
| S96127_RS00080 () | 11813..12733 | + | 921 | WP_002212987.1 | Protein YopD | VF |
| S96127_RS00085 () | 13170..13313 | - | 144 | Protein_16 | IS256 family transposase IS285 | Transposase |
| S96127_RS00090 () | 13413..14050 | - | 638 | Protein_17 | IS6 family transposase | - |
| S96127_RS00095 () | 14071..14280 | + | 210 | WP_002229781.1 | hypothetical protein | - |
| S96127_RS00100 () | 14674..15903 | + | 1230 | WP_002229779.1 | Outer membrane protein YopM | VF |
| S96127_RS00105 () | 15946..16263 | - | 318 | Protein_20 | IS256 family transposase ISSod4 | Transposase |
| S96127_RS00110 () | 16145..16390 | - | 246 | WP_116442925.1 | transposase | - |
| S96127_RS00115 () | 16393..16611 | + | 219 | Protein_22 | IS6 family transposase | - |
| S96127_RS00120 () | 17139..17558 | - | 420 | WP_002222515.1 | hypothetical protein | - |
| S96127_RS00125 () | 17576..17857 | - | 282 | Protein_24 | DDE-type integrase/transposase/recombinase | - |
| S96127_RS00130 () | 18263..18661 | - | 399 | WP_002213004.1 | Chaperone protein SycT | VF |
| S96127_RS00135 () | 18661..19629 | - | 969 | WP_002213006.1 | Cysteine protease YopT | VF |
| S96127_RS00140 () | 20129..20677 | + | 549 | WP_002213007.1 | hypothetical protein | VF |
| S96127_RS00145 () | 20836..21129 | + | 294 | Protein_28 | IS3 family transposase | - |
| S96127_RS00150 () | 21275..21904 | + | 630 | WP_002229770.1 | hypothetical protein | - |
| S96127_RS00155 () | 22011..23156 | + | 1146 | Protein_30 | IS3 family transposase | - |
| S96127_RS00160 () | 23916..25082 | + | 1167 | WP_002220902.1 | Sporulation initiation inhibitor protein Soj | VF |
| S96127_RS00165 () | 25079..26044 | + | 966 | WP_002213354.1 | ParB/RepB/Spo0J family plasmid partition protein | - |
| S96127_RS00170 () | 26204..26440 | + | 237 | WP_154020274.1 | hypothetical protein | - |
| S96127_RS00175 () | 26589..26762 | - | 174 | WP_002213357.1 | hypothetical protein | - |
| S96127_RS00180 () | 26848..27140 | + | 293 | Protein_35 | IS6 family transposase ISEas1 | Transposase |
| S96127_RS00185 () | 27306..27548 | + | 243 | WP_002224342.1 | type II toxin-antitoxin system ParD family antitoxin | Antitoxin Detail |
| S96127_RS00190 () | 27541..27840 | + | 300 | WP_002213360.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| S96127_RS00195 () | 27980..28639 | - | 660 | WP_002229754.1 | Outer membrane virulence protein YopE | VF |
| S96127_RS00200 () | 28833..29225 | + | 393 | WP_002213403.1 | YopE regulator | VF |
| S96127_RS00205 () | 29288..29932 | - | 645 | Protein_40 | IS3 family transposase ISYen3 | Transposase |
| S96127_RS00210 () | 30035..31207 | + | 1173 | WP_002220893.1 | IS21 family transposase IS21 | Transposase |
| S96127_RS00215 () | 31207..31605 | + | 399 | Protein_42 | IS21 family transposase IS21 | Transposase |
| S96127_RS00220 () | 31982..32407 | + | 426 | WP_002213267.1 | hypothetical protein | VF |
| S96127_RS00230 () | 33754..34083 | - | 330 | WP_002229829.1 | hypothetical protein | - |
| S96127_RS00235 () | 34222..34686 | - | 465 | WP_002224338.1 | hypothetical protein | - |
| S96127_RS00240 () | 34705..35256 | - | 552 | WP_002213258.1 | Tn3 family transposase TnpR_Tn3 | Transposase |
| S96127_RS00245 () | 35420..37735 | + | 2316 | WP_002213256.1 | Tn3 family transposase ISEc63 | Transposase |
| S96127_RS00250 () | 37768..38118 | - | 351 | Protein_49 | IS3 family transposase IS1351 | Transposase |
| S96127_RS00255 () | 38718..40021 | + | 1304 | Protein_50 | Adhesin YadA | VF |
| S96127_RS00260 () | 40091..40249 | + | 159 | Protein_51 | EamA family transporter | - |
| S96127_RS00265 () | 40347..40616 | - | 270 | WP_042469136.1 | transposase | - |
| S96127_RS00270 () | 40685..41143 | + | 459 | WP_002213246.1 | hypothetical protein | - |
| S96127_RS00275 () | 41315..41632 | + | 318 | WP_002213244.1 | IS3 family transposase ISKpn37 | Transposase |
| S96127_RS00280 () | 41656..42063 | + | 408 | WP_002213294.1 | IS3 family transposase ISKpn37 | Transposase |
| S96127_RS00285 () | 42046..42354 | - | 309 | Protein_56 | DDE-type integrase/transposase/recombinase | - |
| S96127_RS00290 () | 42480..42728 | + | 249 | WP_002233137.1 | Phospholipase D | VF |
| S96127_RS00295 () | 42866..43120 | + | 255 | WP_002229817.1 | replication regulatory protein RepA | - |
| S96127_RS00300 () | 43362..43436 | + | 75 | WP_002233140.1 | RepA leader peptide Tap | - |
| S96127_RS00305 () | 43417..44295 | + | 879 | WP_002213292.1 | incFII family plasmid replication initiator RepA | - |
| S96127_RS00310 () | 45468..45707 | + | 240 | WP_002213291.1 | hypothetical protein | - |
| S96127_RS00315 () | 45885..46197 | + | 313 | Protein_62 | IS3 family transposase ISKpn37 | Transposase |
| S96127_RS00320 () | 46453..46902 | + | 450 | WP_002229809.1 | hypothetical protein | VF |
| S96127_RS00325 () | 46910..49108 | + | 2199 | WP_002213290.1 | Protein kinase YpkA | VF |
| S96127_RS00330 () | 49504..50370 | + | 867 | WP_002225474.1 | Effector protein YopJ | VF |
| S96127_RS00335 () | 50956..51534 | - | 579 | Protein_66 | IS3 family transposase ISYpe1 | Transposase |
| S96127_RS00340 () | 51537..51770 | + | 234 | Protein_67 | transposase domain-containing protein | - |
| S96127_RS00345 () | 52053..53459 | + | 1407 | WP_002213278.1 | Tyrosine-protein phosphatase YopH | VF |
| S96127_RS00350 () | 53680..53952 | - | 273 | Protein_69 | transposase | - |
| S96127_RS00355 () | 53971..55000 | - | 1030 | Protein_70 | IS3 family transposase | - |
| S96127_RS00360 () | 55548..55895 | - | 348 | WP_002212907.1 | Yop proteins translocation protein M | VF |
| S96127_RS00365 () | 56120..56785 | - | 666 | WP_010981371.1 | Yop proteins translocation protein L | VF |
| S96127_RS00370 () | 56731..57360 | - | 630 | WP_002361471.1 | Yop proteins translocation protein K | VF |
| S96127_RS00375 () | 57360..58094 | - | 735 | WP_002212912.1 | Yop proteins translocation lipoprotein J | VF |
| S96127_RS00380 () | 58101..58448 | - | 348 | WP_002212914.1 | Yop proteins translocation protein I | VF |
| S96127_RS00385 () | 58449..58946 | - | 498 | WP_002212915.1 | Yop proteins translocation protein H | VF |
| S96127_RS00390 () | 58943..59290 | - | 348 | WP_002229801.1 | Putative Yop proteins translocation protein G | VF |
| S96127_RS00395 () | 59292..59555 | - | 264 | WP_002212916.1 | Yop proteins translocation protein F | VF |
| S96127_RS00400 () | 59556..59756 | - | 201 | WP_002212917.1 | Putative Yop proteins translocation protein E | VF |
| S96127_RS00405 () | 59753..61012 | - | 1260 | WP_002212919.1 | Yop proteins translocation protein D | VF |
| S96127_RS00410 () | 61009..62832 | - | 1824 | WP_002212923.1 | Yop proteins translocation protein C | VF |
| S96127_RS00415 () | 62838..63251 | - | 414 | WP_002212925.1 | Chaperone protein YscB | VF |
| S96127_RS00420 () | 63477..63575 | - | 99 | WP_002229797.1 | type III secretion system protein YscA | - |
| S96127_RS00425 () | 63654..64469 | - | 816 | WP_002212931.1 | Virulence regulon transcriptional activator VirF | VF |
| S96127_RS00430 () | 64593..64988 | - | 396 | WP_002222527.1 | Exoenzyme S synthesis protein B | VF |
| S96127_RS00435 () | 65564..66628 | - | 1065 | WP_002212936.1 | Yop proteins translocation protein U | VF |
| S96127_RS00440 () | 66628..67413 | - | 786 | WP_002212938.1 | Surface presentation of antigens protein SpaR | VF |
| S96127_RS00445 () | 67410..67676 | - | 267 | WP_002212945.1 | hypothetical protein | VF |
| S96127_RS00450 () | 67678..68331 | - | 654 | WP_002212947.1 | Surface presentation of antigens protein SpaP | VF |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|