MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 84734 bp
Accession: NZ_CP045434 Location: 2479414..2564147 Organism: Sphingomonas ginsengisoli An et al. 2013 strain KACC 16858 Replicon: chromosome
Accession: NZ_CP045434 Location: 2479414..2564147 Organism: Sphingomonas ginsengisoli An et al. 2013 strain KACC 16858 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GCU42_RS12060 () | 2474564..2475277 | - | 714 | WP_114229141.1 | folate-binding protein YgfZ | - |
| GCU42_RS12065 () | 2475301..2476335 | + | 1035 | WP_114229140.1 | dihydroorotase | - |
| GCU42_RS12070 () | 2476332..2477099 | - | 768 | WP_114229139.1 | Crp/Fnr family transcriptional regulator | - |
| GCU42_RS12080 () | 2477436..2479091 | - | 1656 | WP_152569577.1 | recombinase family protein | - |
| GCU42_RS12085 () | 2479084..2479485 | - | 402 | WP_056878497.1 | helix-turn-helix domain-containing protein | - |
| GCU42_RS12090 () | 2479620..2479889 | - | 270 | WP_114229172.1 | hypothetical protein | - |
| GCU42_RS12095 () | 2480134..2481498 | - | 1365 | WP_056878399.1 | hypothetical protein | - |
| GCU42_RS12100 () | 2481564..2482496 | - | 933 | WP_056878400.1 | hypothetical protein | - |
| GCU42_RS12105 () | 2482493..2483038 | - | 546 | WP_056878401.1 | hypothetical protein | - |
| GCU42_RS12110 () | 2483035..2483277 | - | 243 | WP_056878402.1 | DUF2274 domain-containing protein | - |
| GCU42_RS12115 () | 2483274..2484527 | - | 1254 | WP_056878403.1 | Type IV secretion system protein virB10 | VF |
| GCU42_RS12120 () | 2484524..2485576 | - | 1053 | WP_056878404.1 | P-type conjugative transfer protein TrbG | - |
| GCU42_RS12125 () | 2485573..2486262 | - | 690 | WP_056878405.1 | conjugal transfer protein TrbF | - |
| GCU42_RS12130 () | 2486266..2487630 | - | 1365 | WP_056878406.1 | P-type conjugative transfer protein TrbL | - |
| GCU42_RS12135 () | 2487632..2488021 | - | 390 | WP_056878407.1 | putative entry exclusion protein TrbK-alt | - |
| GCU42_RS12140 () | 2488035..2488808 | - | 774 | WP_056878408.1 | P-type conjugative transfer protein TrbJ | - |
| GCU42_RS12145 () | 2488805..2491243 | - | 2439 | WP_056878409.1 | conjugal transfer protein TrbE | - |
| GCU42_RS12150 () | 2491258..2491539 | - | 282 | WP_056878410.1 | VirB3 family type IV secretion system protein | - |
| GCU42_RS12155 () | 2491539..2491871 | - | 333 | WP_056878411.1 | TrbC/VirB2 family protein | - |
| GCU42_RS12160 () | 2491868..2492908 | - | 1041 | WP_056878412.1 | Type IV secretion system protein VirB11 | VF |
| GCU42_RS12165 () | 2493075..2493515 | - | 441 | WP_056878499.1 | ribbon-helix-helix domain-containing protein | - |
| GCU42_RS12170 () | 2493527..2495518 | - | 1992 | WP_056878413.1 | Conjugal transfer protein TraG | VF |
| GCU42_RS12175 () | 2495635..2495934 | - | 300 | WP_056878414.1 | DUF2285 domain-containing protein | - |
| GCU42_RS12180 () | 2496143..2496364 | + | 222 | WP_056878415.1 | helix-turn-helix transcriptional regulator | - |
| GCU42_RS12185 () | 2496347..2497237 | - | 891 | WP_056878416.1 | HTH-type transcriptional regulator GltC | VF |
| GCU42_RS12190 () | 2497318..2498100 | - | 783 | WP_056878417.1 | hypothetical protein | - |
| GCU42_RS12195 () | 2498126..2498434 | - | 309 | WP_056878418.1 | MFS transporter | - |
| GCU42_RS12200 () | 2498431..2498847 | - | 417 | WP_056878419.1 | carboxymuconolactone decarboxylase family protein | - |
| GCU42_RS12205 () | 2498967..2499596 | + | 630 | WP_056878420.1 | TetR/AcrR family transcriptional regulator | - |
| GCU42_RS12210 () | 2499603..2501657 | - | 2055 | WP_056878421.1 | relaxase/mobilization nuclease and DUF3363 domain-containing protein | - |
| GCU42_RS12215 () | 2501947..2502876 | - | 930 | WP_114229174.1 | Membrane-bound lytic murein transglycosylase C | VF |
| GCU42_RS12220 () | 2502881..2503216 | - | 336 | WP_056878422.1 | DUF736 domain-containing protein | - |
| GCU42_RS12225 () | 2503284..2503829 | - | 546 | WP_056878423.1 | S26 family signal peptidase | - |
| GCU42_RS12230 () | 2503826..2504347 | - | 522 | WP_056878424.1 | DUF2840 domain-containing protein | - |
| GCU42_RS12235 () | 2504344..2504598 | - | 255 | WP_056878425.1 | hypothetical protein | - |
| GCU42_RS12240 () | 2504595..2505248 | - | 654 | WP_056878426.1 | Chromosome-partitioning ATPase Soj | VF |
| GCU42_RS12245 () | 2505245..2506324 | - | 1080 | WP_056878427.1 | replication initiator protein A | - |
| GCU42_RS12250 () | 2506325..2506594 | - | 270 | WP_056878428.1 | helix-turn-helix domain-containing protein | - |
| GCU42_RS12255 () | 2506825..2507280 | + | 456 | WP_056878429.1 | Lrp/AsnC family transcriptional regulator | - |
| GCU42_RS12260 () | 2507280..2507906 | + | 627 | WP_056878430.1 | LysE family translocator | - |
| GCU42_RS12265 () | 2507930..2508544 | + | 615 | WP_056878431.1 | LysE family translocator | - |
| GCU42_RS12270 () | 2508588..2509076 | - | 489 | WP_056878432.1 | DUF2285 domain-containing protein | - |
| GCU42_RS12275 () | 2509183..2509380 | - | 198 | WP_081420085.1 | hypothetical protein | - |
| GCU42_RS12280 () | 2509699..2510544 | - | 846 | WP_056878433.1 | DUF945 domain-containing protein | - |
| GCU42_RS12285 () | 2510936..2511250 | - | 315 | WP_056878434.1 | DUF736 domain-containing protein | - |
| GCU42_RS12290 () | 2511670..2512872 | - | 1203 | Protein_2441 | IS701 family transposase ISNha1 | Transposase |
| GCU42_RS12295 () | 2513283..2514452 | - | 1170 | WP_056878436.1 | IS91 family transposase ISAzo26 | Transposase |
| GCU42_RS12300 () | 2514462..2515334 | - | 873 | WP_056878437.1 | IS91 family transposase ISAzo26 | Transposase |
| GCU42_RS12305 () | 2515923..2516213 | - | 291 | WP_056878438.1 | antibiotic biosynthesis monooxygenase | - |
| GCU42_RS12310 () | 2516255..2516677 | - | 423 | WP_056878439.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| GCU42_RS12315 () | 2516674..2516928 | - | 255 | WP_056878440.1 | hypothetical protein | Antitoxin Detail |
| GCU42_RS12320 () | 2517024..2517440 | - | 417 | WP_056878441.1 | hypothetical protein | - |
| GCU42_RS12325 () | 2517578..2519623 | - | 2046 | WP_056878442.1 | ParB/RepB/Spo0J family partition protein | - |
| GCU42_RS12330 () | 2520101..2520589 | + | 489 | WP_056878443.1 | TIR domain-containing protein | - |
| GCU42_RS12335 () | 2520598..2521758 | + | 1161 | WP_114229175.1 | toll/interleukin-1 receptor domain-containing protein | - |
| GCU42_RS12340 () | 2521761..2522417 | + | 657 | WP_056878445.1 | hypothetical protein | - |
| GCU42_RS12345 () | 2522451..2523047 | + | 597 | WP_152569578.1 | toll-Interleukin receptor | - |
| GCU42_RS12350 () | 2523110..2523820 | - | 711 | WP_056878446.1 | toll/interleukin-1 receptor domain-containing protein | - |
| GCU42_RS12355 () | 2524127..2526625 | - | 2499 | WP_114229177.1 | S8 family peptidase | - |
| GCU42_RS12360 () | 2526618..2527826 | - | 1209 | WP_056878501.1 | AAA family ATPase | - |
| GCU42_RS12365 () | 2528019..2528261 | + | 243 | WP_081420087.1 | DUF2188 domain-containing protein | - |
| GCU42_RS15135 () | 2528557..2529141 | + | 585 | WP_162789376.1 | hypothetical protein | - |
| GCU42_RS12380 () | 2529156..2530520 | + | 1365 | WP_114229137.1 | L,D-transpeptidase family protein | - |
| GCU42_RS12385 () | 2530517..2531239 | - | 723 | WP_114229136.1 | hypothetical protein | - |
| GCU42_RS12390 () | 2531275..2532060 | - | 786 | WP_114229135.1 | alpha/beta fold hydrolase | - |
| GCU42_RS12395 () | 2532107..2532595 | + | 489 | WP_114229134.1 | (2Fe-2S)-binding protein | - |
| GCU42_RS12400 () | 2532660..2533550 | + | 891 | WP_114229133.1 | RcnB family protein | - |
| GCU42_RS12405 () | 2533646..2535511 | + | 1866 | WP_114229132.1 | DUF885 domain-containing protein | - |
| GCU42_RS12410 () | 2535515..2536792 | - | 1278 | WP_114229131.1 | peptidoglycan editing factor PgeF | - |
| GCU42_RS12415 () | 2536789..2537697 | - | 909 | WP_114229130.1 | SAM-dependent methyltransferase | - |
| GCU42_RS12420 () | 2537763..2538644 | - | 882 | WP_114229129.1 | prolipoprotein diacylglyceryl transferase | - |
| GCU42_RS12425 () | 2538716..2540386 | + | 1671 | WP_114229128.1 | acyl--CoA ligase | - |
| GCU42_RS12430 () | 2540394..2542355 | + | 1962 | WP_114229127.1 | xanthine dehydrogenase family protein molybdopterin-binding subunit | - |
| GCU42_RS12435 () | 2542352..2543359 | + | 1008 | WP_114229126.1 | ferrochelatase | - |
| GCU42_RS12440 () | 2543385..2544107 | + | 723 | WP_114229125.1 | Acetoacetyl-CoA reductase | VF |
| GCU42_RS12445 () | 2544248..2544490 | + | 243 | WP_114229124.1 | ribbon-helix-helix domain-containing protein | - |
| GCU42_RS12450 () | 2544599..2545456 | - | 858 | WP_114229123.1 | hypothetical protein | - |
| GCU42_RS12455 () | 2545456..2550084 | - | 4629 | WP_114229122.1 | NAD-glutamate dehydrogenase | - |
| GCU42_RS12460 () | 2550171..2551895 | - | 1725 | WP_114229121.1 | hypothetical protein | - |
| GCU42_RS12465 () | 2552006..2552281 | + | 276 | WP_205215034.1 | KTSC domain-containing protein | - |
| GCU42_RS12470 () | 2552369..2552593 | + | 225 | WP_114229119.1 | hypothetical protein | - |
| GCU42_RS12475 () | 2552681..2553979 | + | 1299 | WP_114229118.1 | homogentisate 1,2-dioxygenase | - |
| GCU42_RS12480 () | 2553976..2555256 | + | 1281 | WP_114229117.1 | fumarylacetoacetase | - |
| GCU42_RS12485 () | 2555256..2556557 | + | 1302 | WP_114229116.1 | M20/M25/M40 family metallo-hydrolase | - |
| GCU42_RS12490 () | 2556554..2556856 | + | 303 | WP_114229115.1 | N-acetyltransferase | - |
| GCU42_RS12495 () | 2556966..2558792 | + | 1827 | WP_114229114.1 | autotransporter domain-containing protein | - |
| GCU42_RS12500 () | 2558850..2559443 | - | 594 | WP_114229113.1 | Holliday junction branch migration protein RuvA | - |
| GCU42_RS12505 () | 2559564..2560052 | - | 489 | WP_114229112.1 | crossover junction endodeoxyribonuclease RuvC | - |
| GCU42_RS12510 () | 2560049..2560399 | - | 351 | WP_114229111.1 | DUF3147 family protein | - |
| GCU42_RS12515 () | 2560399..2561142 | - | 744 | WP_114229110.1 | putative transcriptional regulatory protein | VF |
| GCU42_RS12520 () | 2561202..2561945 | + | 744 | WP_114229109.1 | CPBP family intramembrane metalloprotease | - |
| GCU42_RS12525 () | 2561942..2562184 | - | 243 | WP_114229170.1 | DUF2312 domain-containing protein | - |
| GCU42_RS12530 () | 2562309..2563769 | + | 1461 | WP_114229108.1 | pyruvate kinase | - |
| GCU42_RS12535 () | 2563776..2564540 | - | 765 | WP_114229107.1 | histidine phosphatase family protein | - |
| GCU42_RS12540 () | 2564687..2566840 | - | 2154 | WP_114229106.1 | sugar nucleotide-binding protein | - |
| GCU42_RS12545 () | 2566858..2569107 | - | 2250 | WP_114229169.1 | UDP-galactopyranose mutase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|