MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 70503 bp
Accession: NZ_CP045160 Location: 1..70503 Organism: Yersinia pestis subsp. pestis bv. Medievalis strain SCPM-O-B-6530 Replicon: plasmid pCD
Accession: NZ_CP045160 Location: 1..70503 Organism: Yersinia pestis subsp. pestis bv. Medievalis strain SCPM-O-B-6530 Replicon: plasmid pCD
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DJY80_RS23000 () | 1..879 | + | 879 | WP_002213292.1 | incFII family plasmid replication initiator RepA | - |
| DJY80_RS22145 () | 2052..2291 | + | 240 | WP_002213291.1 | hypothetical protein | - |
| DJY80_RS22155 () | 2469..2781 | + | 313 | Protein_3 | IS3 family transposase ISKpn37 | Transposase |
| DJY80_RS22160 () | 3037..3465 | + | 429 | WP_002233145.1 | hypothetical protein | VF |
| DJY80_RS22165 () | 3483..5681 | + | 2199 | WP_002213290.1 | Protein kinase YpkA | VF |
| DJY80_RS22170 () | 6077..6943 | + | 867 | WP_002224250.1 | Effector protein YopJ | VF |
| DJY80_RS22175 () | 7529..8107 | - | 579 | Protein_7 | IS3 family transposase ISYpe1 | Transposase |
| DJY80_RS22180 () | 8110..8343 | + | 234 | Protein_8 | transposase domain-containing protein | - |
| DJY80_RS22185 () | 8626..10032 | + | 1407 | WP_002213278.1 | Tyrosine-protein phosphatase YopH | VF |
| DJY80_RS22190 () | 10253..10525 | - | 273 | Protein_10 | transposase | - |
| DJY80_RS22195 () | 10544..11420 | - | 877 | Protein_11 | IS3 family transposase | - |
| DJY80_RS22205 () | 11487..12269 | - | 783 | WP_001317493.1 | IS21 family transposase IS100kyp | Transposase |
| DJY80_RS22210 () | 12266..13288 | - | 1023 | WP_000255944.1 | IS21 family transposase IS100kyp | Transposase |
| DJY80_RS22215 () | 13374..13532 | - | 159 | Protein_14 | IS3 family transposase ISEca11 | Transposase |
| DJY80_RS22225 () | 14080..14427 | - | 348 | WP_002212907.1 | Yop proteins translocation protein M | VF |
| DJY80_RS22230 () | 14652..15317 | - | 666 | WP_010981371.1 | Yop proteins translocation protein L | VF |
| DJY80_RS22235 () | 15263..15892 | - | 630 | WP_002361471.1 | Yop proteins translocation protein K | VF |
| DJY80_RS22240 () | 15892..16626 | - | 735 | WP_002212912.1 | Yop proteins translocation lipoprotein J | VF |
| DJY80_RS22245 () | 16633..16980 | - | 348 | WP_002212914.1 | Yop proteins translocation protein I | VF |
| DJY80_RS22250 () | 16981..17478 | - | 498 | WP_002212915.1 | Yop proteins translocation protein H | VF |
| DJY80_RS22255 () | 17475..17822 | - | 348 | WP_002229801.1 | Putative Yop proteins translocation protein G | VF |
| DJY80_RS22260 () | 17824..18087 | - | 264 | WP_002212916.1 | Yop proteins translocation protein F | VF |
| DJY80_RS22265 () | 18088..18288 | - | 201 | WP_002212917.1 | Putative Yop proteins translocation protein E | VF |
| DJY80_RS22270 () | 18285..19544 | - | 1260 | WP_002212919.1 | Yop proteins translocation protein D | VF |
| DJY80_RS22275 () | 19541..21364 | - | 1824 | WP_002212923.1 | Yop proteins translocation protein C | VF |
| DJY80_RS22280 () | 21370..21783 | - | 414 | WP_002212925.1 | Chaperone protein YscB | VF |
| DJY80_RS22285 () | 22009..22107 | - | 99 | WP_002229797.1 | type III secretion system protein YscA | - |
| DJY80_RS22290 () | 22186..23001 | - | 816 | WP_002212931.1 | Virulence regulon transcriptional activator VirF | VF |
| DJY80_RS22295 () | 23125..23520 | - | 396 | WP_002222527.1 | Exoenzyme S synthesis protein B | VF |
| DJY80_RS22300 () | 24096..25160 | - | 1065 | WP_002212936.1 | Yop proteins translocation protein U | VF |
| DJY80_RS22305 () | 25160..25945 | - | 786 | WP_002212938.1 | Surface presentation of antigens protein SpaR | VF |
| DJY80_RS22310 () | 25942..26208 | - | 267 | WP_002212945.1 | hypothetical protein | VF |
| DJY80_RS22315 () | 26210..26863 | - | 654 | WP_002212947.1 | Surface presentation of antigens protein SpaP | VF |
| DJY80_RS22320 () | 26860..27783 | - | 924 | WP_002212948.1 | Yop proteins translocation protein Q | VF |
| DJY80_RS22325 () | 27780..29147 | - | 1368 | WP_002212950.1 | hypothetical protein | VF |
| DJY80_RS22330 () | 29147..29611 | - | 465 | WP_002212952.1 | Yop proteins translocation protein O | VF |
| DJY80_RS22335 () | 29608..30927 | - | 1320 | WP_002212955.1 | putative ATP synthase YscN | VF |
| DJY80_RS22340 () | 31125..32006 | + | 882 | WP_002212958.1 | Outer membrane protein YopN | VF |
| DJY80_RS22345 () | 31987..32265 | + | 279 | WP_002212965.1 | Protein TyeA | VF |
| DJY80_RS22350 () | 32252..32623 | + | 372 | WP_002229794.1 | Chaperone protein SycN | VF |
| DJY80_RS22355 () | 32620..32988 | + | 369 | WP_002212969.1 | Yop proteins translocation protein X | VF |
| DJY80_RS22360 () | 32985..33329 | + | 345 | WP_002229791.1 | Chaperone protein YscY | VF |
| DJY80_RS22365 () | 33316..35430 | + | 2115 | WP_002212971.1 | Invasion protein InvA | VF |
| DJY80_RS22370 () | 35427..35867 | + | 441 | WP_002220918.1 | hypothetical protein | VF |
| DJY80_RS22375 () | 35909..36196 | + | 288 | WP_002212973.1 | hypothetical protein | VF |
| DJY80_RS22380 () | 36198..37178 | + | 981 | WP_002212981.1 | Virulence-associated V antigen | VF |
| DJY80_RS22385 () | 37191..37697 | + | 507 | WP_002222758.1 | Chaperone protein IpgC | VF |
| DJY80_RS22390 () | 37675..38880 | + | 1206 | WP_002212985.1 | Protein YopB | VF |
| DJY80_RS22395 () | 38899..39819 | + | 921 | WP_002212987.1 | Protein YopD | VF |
| DJY80_RS22400 () | 40256..40399 | - | 144 | Protein_50 | IS256 family transposase IS285 | Transposase |
| DJY80_RS22405 () | 40499..41136 | - | 638 | Protein_51 | IS6 family transposase | - |
| DJY80_RS22410 () | 41157..41366 | + | 210 | WP_002229781.1 | hypothetical protein | - |
| DJY80_RS22415 () | 41760..42989 | + | 1230 | WP_002229779.1 | Outer membrane protein YopM | VF |
| DJY80_RS22420 () | 43032..43349 | - | 318 | Protein_54 | IS256 family transposase ISSod4 | Transposase |
| DJY80_RS22425 () | 43231..43476 | - | 246 | WP_116442925.1 | transposase | - |
| DJY80_RS22430 () | 43479..43697 | + | 219 | Protein_56 | IS6 family transposase | - |
| DJY80_RS22435 () | 44225..44644 | - | 420 | WP_002222515.1 | hypothetical protein | - |
| DJY80_RS22440 () | 44662..44943 | - | 282 | Protein_58 | DDE-type integrase/transposase/recombinase | - |
| DJY80_RS22445 () | 45349..45747 | - | 399 | WP_002213004.1 | Chaperone protein SycT | VF |
| DJY80_RS22450 () | 45747..46715 | - | 969 | WP_002213006.1 | Cysteine protease YopT | VF |
| DJY80_RS22455 () | 47215..47763 | + | 549 | WP_002213007.1 | hypothetical protein | VF |
| DJY80_RS22460 () | 47922..48215 | + | 294 | Protein_62 | IS3 family transposase | - |
| DJY80_RS22470 () | 48361..48990 | + | 630 | WP_002229770.1 | hypothetical protein | - |
| DJY80_RS22475 () | 49097..50242 | + | 1146 | Protein_64 | IS3 family transposase | - |
| DJY80_RS22485 () | 51002..52168 | + | 1167 | WP_002220902.1 | Sporulation initiation inhibitor protein Soj | VF |
| DJY80_RS22490 () | 52165..53130 | + | 966 | WP_002213354.1 | ParB/RepB/Spo0J family plasmid partition protein | - |
| DJY80_RS22815 () | 53290..53526 | + | 237 | WP_154020274.1 | hypothetical protein | - |
| DJY80_RS23005 () | 53675..53848 | - | 174 | WP_002213357.1 | hypothetical protein | - |
| DJY80_RS22500 () | 53935..54227 | + | 293 | Protein_69 | IS6 family transposase ISEas1 | Transposase |
| DJY80_RS22505 () | 54393..54635 | + | 243 | WP_002224342.1 | type II toxin-antitoxin system ParD family antitoxin | Antitoxin Detail |
| DJY80_RS22510 () | 54628..54927 | + | 300 | WP_002213360.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| DJY80_RS22515 () | 55067..55726 | - | 660 | WP_002229754.1 | Outer membrane virulence protein YopE | VF |
| DJY80_RS22520 () | 55920..56312 | + | 393 | WP_002213403.1 | YopE regulator | VF |
| DJY80_RS22525 () | 56375..57019 | - | 645 | Protein_74 | IS3 family transposase ISYen3 | Transposase |
| DJY80_RS22530 () | 57122..58294 | + | 1173 | WP_002220893.1 | IS21 family transposase IS21 | Transposase |
| DJY80_RS22535 () | 58294..58692 | + | 399 | Protein_76 | IS21 family transposase IS21 | Transposase |
| DJY80_RS22540 () | 59069..59494 | + | 426 | WP_002213267.1 | hypothetical protein | VF |
| DJY80_RS22555 () | 60841..61170 | - | 330 | WP_002229829.1 | hypothetical protein | - |
| DJY80_RS22560 () | 61309..61773 | - | 465 | WP_002224338.1 | hypothetical protein | - |
| DJY80_RS22565 () | 61792..62343 | - | 552 | WP_002213258.1 | Tn3 family transposase TnpR_Tn3 | Transposase |
| DJY80_RS22570 () | 62507..64822 | + | 2316 | WP_002213256.1 | Tn3 family transposase ISEc63 | Transposase |
| DJY80_RS22575 () | 64855..65205 | - | 351 | Protein_83 | IS3 family transposase IS1351 | Transposase |
| DJY80_RS22580 () | 65805..67108 | + | 1304 | Protein_84 | Adhesin YadA | VF |
| DJY80_RS23010 () | 67178..67336 | + | 159 | Protein_85 | EamA family transporter | - |
| DJY80_RS22590 () | 67434..67703 | - | 270 | WP_042469136.1 | transposase | - |
| DJY80_RS22595 () | 67772..68230 | + | 459 | WP_002213246.1 | hypothetical protein | - |
| DJY80_RS22605 () | 68402..68719 | + | 318 | WP_002213244.1 | IS3 family transposase ISKpn37 | Transposase |
| DJY80_RS22610 () | 68743..69150 | + | 408 | WP_002213294.1 | IS3 family transposase ISKpn37 | Transposase |
| DJY80_RS22615 () | 69133..69441 | - | 309 | Protein_90 | DDE-type integrase/transposase/recombinase | - |
| DJY80_RS22620 () | 69567..69815 | + | 249 | WP_002233137.1 | Phospholipase D | VF |
| DJY80_RS22625 () | 69953..70207 | + | 255 | WP_002229817.1 | replication regulatory protein RepA | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|