MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 68554 bp
Accession: NZ_CP045156 Location: 1..68554 Organism: Yersinia pestis strain SCPM-O-B-5935 (I-1996) Replicon: plasmid pCD
Accession: NZ_CP045156 Location: 1..68554 Organism: Yersinia pestis strain SCPM-O-B-5935 (I-1996) Replicon: plasmid pCD
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GCK71_RS23020 () | 1..879 | + | 879 | WP_002213292.1 | incFII family plasmid replication initiator RepA | - |
| GCK71_RS22170 () | 2052..2291 | + | 240 | WP_002213291.1 | hypothetical protein | - |
| GCK71_RS22180 () | 2469..2781 | + | 313 | Protein_3 | IS3 family transposase ISKpn37 | Transposase |
| GCK71_RS22185 () | 3037..3486 | + | 450 | WP_002229809.1 | hypothetical protein | VF |
| GCK71_RS22190 () | 3494..5692 | + | 2199 | WP_002213290.1 | Protein kinase YpkA | VF |
| GCK71_RS22195 () | 6088..6954 | + | 867 | WP_002225474.1 | Effector protein YopJ | VF |
| GCK71_RS22200 () | 7540..8118 | - | 579 | Protein_7 | IS3 family transposase ISYpe1 | Transposase |
| GCK71_RS22205 () | 8121..8354 | + | 234 | Protein_8 | transposase domain-containing protein | - |
| GCK71_RS22210 () | 8637..10043 | + | 1407 | WP_002213278.1 | Tyrosine-protein phosphatase YopH | VF |
| GCK71_RS22215 () | 10264..10536 | - | 273 | Protein_10 | transposase | - |
| GCK71_RS22220 () | 10555..11584 | - | 1030 | Protein_11 | IS3 family transposase | - |
| GCK71_RS22230 () | 12132..12479 | - | 348 | WP_002212907.1 | Yop proteins translocation protein M | VF |
| GCK71_RS22235 () | 12704..13369 | - | 666 | WP_010981371.1 | Yop proteins translocation protein L | VF |
| GCK71_RS22240 () | 13315..13944 | - | 630 | WP_002361471.1 | Yop proteins translocation protein K | VF |
| GCK71_RS22245 () | 13944..14678 | - | 735 | WP_002212912.1 | Yop proteins translocation lipoprotein J | VF |
| GCK71_RS22250 () | 14685..15032 | - | 348 | WP_002212914.1 | Yop proteins translocation protein I | VF |
| GCK71_RS22255 () | 15033..15530 | - | 498 | WP_002212915.1 | Yop proteins translocation protein H | VF |
| GCK71_RS22260 () | 15527..15874 | - | 348 | WP_002229801.1 | Putative Yop proteins translocation protein G | VF |
| GCK71_RS22265 () | 15876..16139 | - | 264 | WP_002212916.1 | Yop proteins translocation protein F | VF |
| GCK71_RS22270 () | 16140..16340 | - | 201 | WP_002212917.1 | Putative Yop proteins translocation protein E | VF |
| GCK71_RS22275 () | 16337..17596 | - | 1260 | WP_002212919.1 | Yop proteins translocation protein D | VF |
| GCK71_RS22280 () | 17593..19416 | - | 1824 | WP_002212923.1 | Yop proteins translocation protein C | VF |
| GCK71_RS22285 () | 19422..19835 | - | 414 | WP_002212925.1 | Chaperone protein YscB | VF |
| GCK71_RS22290 () | 20061..20159 | - | 99 | WP_002229797.1 | type III secretion system protein YscA | - |
| GCK71_RS22295 () | 20238..21053 | - | 816 | WP_002212931.1 | Virulence regulon transcriptional activator VirF | VF |
| GCK71_RS22300 () | 21177..21572 | - | 396 | WP_002222527.1 | Exoenzyme S synthesis protein B | VF |
| GCK71_RS22305 () | 22148..23212 | - | 1065 | WP_002212936.1 | Yop proteins translocation protein U | VF |
| GCK71_RS22310 () | 23212..23997 | - | 786 | WP_002212938.1 | Surface presentation of antigens protein SpaR | VF |
| GCK71_RS22315 () | 23994..24260 | - | 267 | WP_002212945.1 | hypothetical protein | VF |
| GCK71_RS22320 () | 24262..24915 | - | 654 | WP_002212947.1 | Surface presentation of antigens protein SpaP | VF |
| GCK71_RS22325 () | 24912..25835 | - | 924 | WP_002212948.1 | Yop proteins translocation protein Q | VF |
| GCK71_RS22330 () | 25832..27199 | - | 1368 | WP_002212950.1 | hypothetical protein | VF |
| GCK71_RS22335 () | 27199..27663 | - | 465 | WP_002212952.1 | Yop proteins translocation protein O | VF |
| GCK71_RS22340 () | 27660..28979 | - | 1320 | WP_002212955.1 | putative ATP synthase YscN | VF |
| GCK71_RS22345 () | 29177..30058 | + | 882 | WP_002212958.1 | Outer membrane protein YopN | VF |
| GCK71_RS22350 () | 30039..30317 | + | 279 | WP_002212965.1 | Protein TyeA | VF |
| GCK71_RS22355 () | 30304..30675 | + | 372 | WP_002229794.1 | Chaperone protein SycN | VF |
| GCK71_RS22360 () | 30672..31040 | + | 369 | WP_002212969.1 | Yop proteins translocation protein X | VF |
| GCK71_RS22365 () | 31037..31381 | + | 345 | WP_002229791.1 | Chaperone protein YscY | VF |
| GCK71_RS22370 () | 31368..33482 | + | 2115 | WP_002212971.1 | Invasion protein InvA | VF |
| GCK71_RS22375 () | 33479..33919 | + | 441 | WP_002220918.1 | hypothetical protein | VF |
| GCK71_RS22380 () | 33961..34248 | + | 288 | WP_002212973.1 | hypothetical protein | VF |
| GCK71_RS22385 () | 34250..35230 | + | 981 | WP_002212981.1 | Virulence-associated V antigen | VF |
| GCK71_RS22390 () | 35243..35749 | + | 507 | WP_002222758.1 | Chaperone protein IpgC | VF |
| GCK71_RS22395 () | 35727..36932 | + | 1206 | WP_002212985.1 | Protein YopB | VF |
| GCK71_RS22400 () | 36951..37871 | + | 921 | WP_002212987.1 | Protein YopD | VF |
| GCK71_RS22405 () | 38308..38451 | - | 144 | Protein_47 | IS256 family transposase IS285 | Transposase |
| GCK71_RS22410 () | 38551..39188 | - | 638 | Protein_48 | IS6 family transposase | - |
| GCK71_RS22415 () | 39209..39418 | + | 210 | WP_002229781.1 | hypothetical protein | - |
| GCK71_RS22420 () | 39812..41041 | + | 1230 | WP_002229779.1 | Outer membrane protein YopM | VF |
| GCK71_RS22425 () | 41084..41401 | - | 318 | Protein_51 | IS256 family transposase ISSod4 | Transposase |
| GCK71_RS22430 () | 41283..41528 | - | 246 | WP_116442925.1 | transposase | - |
| GCK71_RS22435 () | 41531..41749 | + | 219 | Protein_53 | IS6 family transposase | - |
| GCK71_RS22440 () | 42277..42696 | - | 420 | WP_002222515.1 | hypothetical protein | - |
| GCK71_RS22445 () | 42714..42995 | - | 282 | Protein_55 | DDE-type integrase/transposase/recombinase | - |
| GCK71_RS22795 () | 43046..43357 | + | 312 | WP_002233188.1 | hypothetical protein | - |
| GCK71_RS22450 () | 43401..43799 | - | 399 | WP_002213004.1 | Chaperone protein SycT | VF |
| GCK71_RS22455 () | 43799..44767 | - | 969 | WP_002213006.1 | Cysteine protease YopT | VF |
| GCK71_RS22460 () | 45267..45815 | + | 549 | WP_002213007.1 | hypothetical protein | VF |
| GCK71_RS22465 () | 45974..46267 | + | 294 | Protein_60 | IS3 family transposase | - |
| GCK71_RS22475 () | 46413..47042 | + | 630 | WP_002229770.1 | hypothetical protein | - |
| GCK71_RS22480 () | 47149..48294 | + | 1146 | Protein_62 | IS3 family transposase | - |
| GCK71_RS22490 () | 49054..50220 | + | 1167 | WP_002220902.1 | Sporulation initiation inhibitor protein Soj | VF |
| GCK71_RS22495 () | 50217..51182 | + | 966 | WP_002213354.1 | ParB/RepB/Spo0J family plasmid partition protein | - |
| GCK71_RS22800 () | 51342..51578 | + | 237 | WP_154020274.1 | hypothetical protein | - |
| GCK71_RS23025 () | 51727..51900 | - | 174 | WP_002213357.1 | hypothetical protein | - |
| GCK71_RS22505 () | 51986..52278 | + | 293 | Protein_67 | IS6 family transposase ISEas1 | Transposase |
| GCK71_RS22510 () | 52444..52686 | + | 243 | WP_002224342.1 | type II toxin-antitoxin system ParD family antitoxin | Antitoxin Detail |
| GCK71_RS22515 () | 52679..52978 | + | 300 | WP_002213360.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| GCK71_RS22520 () | 53118..53777 | - | 660 | WP_002229754.1 | Outer membrane virulence protein YopE | VF |
| GCK71_RS22525 () | 53971..54363 | + | 393 | WP_002213403.1 | YopE regulator | VF |
| GCK71_RS22530 () | 54426..55070 | - | 645 | Protein_72 | IS3 family transposase ISYen3 | Transposase |
| GCK71_RS22535 () | 55173..56345 | + | 1173 | WP_002220893.1 | IS21 family transposase IS21 | Transposase |
| GCK71_RS22540 () | 56345..56743 | + | 399 | Protein_74 | IS21 family transposase IS21 | Transposase |
| GCK71_RS22545 () | 57120..57545 | + | 426 | WP_002213267.1 | hypothetical protein | VF |
| GCK71_RS22560 () | 58892..59221 | - | 330 | WP_002229829.1 | hypothetical protein | - |
| GCK71_RS22565 () | 59360..59824 | - | 465 | WP_002224338.1 | hypothetical protein | - |
| GCK71_RS22570 () | 59843..60394 | - | 552 | WP_002213258.1 | Tn3 family transposase TnpR_Tn3 | Transposase |
| GCK71_RS22575 () | 60558..62873 | + | 2316 | WP_002213256.1 | Tn3 family transposase ISEc63 | Transposase |
| GCK71_RS22580 () | 62906..63256 | - | 351 | Protein_81 | IS3 family transposase IS1351 | Transposase |
| GCK71_RS22585 () | 63856..65159 | + | 1304 | Protein_82 | Adhesin YadA | VF |
| GCK71_RS23030 () | 65229..65387 | + | 159 | Protein_83 | EamA family transporter | - |
| GCK71_RS22595 () | 65485..65754 | - | 270 | WP_042469136.1 | transposase | - |
| GCK71_RS22600 () | 65823..66281 | + | 459 | WP_002213246.1 | hypothetical protein | - |
| GCK71_RS22610 () | 66453..66770 | + | 318 | WP_002213244.1 | IS3 family transposase ISKpn37 | Transposase |
| GCK71_RS22615 () | 66794..67201 | + | 408 | WP_002213294.1 | IS3 family transposase ISKpn37 | Transposase |
| GCK71_RS22620 () | 67184..67492 | - | 309 | Protein_88 | DDE-type integrase/transposase/recombinase | - |
| GCK71_RS22625 () | 67618..67866 | + | 249 | WP_002233137.1 | Phospholipase D | VF |
| GCK71_RS22630 () | 68004..68258 | + | 255 | WP_002229817.1 | replication regulatory protein RepA | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|