MGE detailed information
MGE type: Genomic_island MGE length: 26347 bp
Accession: NZ_CP042901 Location: 4162584..4188930 Organism: Escherichia coli strain CFSAN061762 Replicon: chromosome
Accession: NZ_CP042901 Location: 4162584..4188930 Organism: Escherichia coli strain CFSAN061762 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CA898_RS20155 (4158063) | 4158063..4158566 | - | 504 | WP_000870592.1 | type 1 fimbria minor subunit FimG | - |
| CA898_RS20160 (4158579) | 4158579..4159109 | - | 531 | WP_001244827.1 | type 1 fimbria minor subunit FimF | - |
| CA898_RS20165 (4159119) | 4159119..4161755 | - | 2637 | WP_053287292.1 | fimbrial usher FimD | - |
| CA898_RS20170 (4161822) | 4161822..4162547 | - | 726 | WP_000066560.1 | type 1 fimbria chaperone FimC | - |
| CA898_RS20175 (4162584) | 4162584..4163123 | - | 540 | WP_000824114.1 | fimbrial protein | - |
| CA898_RS20180 (4163188) | 4163188..4163736 | - | 549 | WP_000695564.1 | type 1 fimbrial major subunit FimA | - |
| CA898_RS20185 (4164219) | 4164219..4164815 | - | 597 | WP_000044711.1 | type 1 fimbria switch DNA invertase FimE | - |
| CA898_RS20190 (4165293) | 4165293..4165895 | - | 603 | WP_000790583.1 | type 1 fimbria switch DNA invertase FimB | - |
| CA898_RS20195 (4167351) | 4167351..4168067 | + | 717 | WP_001295734.1 | N-acetylneuraminic acid outer membrane channel NanC | - |
| CA898_RS20200 (4168087) | 4168087..4169193 | + | 1107 | WP_001309184.1 | N-acetylneuraminate epimerase | - |
| CA898_RS20205 (4169258) | 4169258..4170238 | + | 981 | WP_000991438.1 | 9-O-acetyl-N-acetylneuraminic acid deacetylase | - |
| CA898_RS24060 (4170348) | 4170348..4170553 | + | 206 | Protein_3970 | HNH endonuclease | - |
| CA898_RS20210 (4170821) | 4170821..4172061 | - | 1241 | Protein_3971 | helicase YjhR | - |
| CA898_RS24065 (4172177) | 4172177..4172308 | + | 132 | WP_001309182.1 | hypothetical protein | - |
| CA898_RS20220 (4172799) | 4172799..4173056 | + | 258 | WP_001054376.1 | YjhX family toxin | Toxin Detail |
| CA898_RS20225 (4173068) | 4173068..4173613 | + | 546 | WP_001309181.1 | N-acetyltransferase | Antitoxin Detail |
| CA898_RS20230 (4173669) | 4173669..4174415 | + | 747 | WP_000354251.1 | class I SAM-dependent methyltransferase | - |
| CA898_RS20235 (4174584) | 4174584..4174802 | + | 219 | Protein_3976 | hypothetical protein | - |
| CA898_RS20240 (4174840) | 4174840..4174956 | + | 117 | Protein_3977 | VOC family protein | - |
| CA898_RS20245 (4175201) | 4175201..4176322 | + | 1122 | WP_000010829.1 | M42 family metallopeptidase | - |
| CA898_RS20250 (4176319) | 4176319..4176597 | + | 279 | WP_000722973.1 | PTS sugar transporter subunit IIB SgcB | - |
| CA898_RS20255 (4176609) | 4176609..4177922 | + | 1314 | WP_000460843.1 | PTS sugar transporter subunit IIC SgcC | - |
| CA898_RS20260 (4177935) | 4177935..4178741 | + | 807 | WP_000118626.1 | BtpA family protein SgcQ | - |
| CA898_RS20265 (4178872) | 4178872..4179303 | + | 432 | WP_000606406.1 | SgcA family PTS sugar transporter subunit IIA | - |
| CA898_RS20270 (4179315) | 4179315..4179947 | + | 633 | WP_000600622.1 | ribulose-phosphate 3 epimerase family protein | - |
| CA898_RS20275 (4179964) | 4179964..4180746 | + | 783 | WP_000082780.1 | DeoR/GlpR family DNA-binding transcription regulator | - |
| CA898_RS20280 (4181049) | 4181049..4181837 | + | 789 | WP_000251798.1 | IclR family transcriptional regulator | - |
| CA898_RS20285 (4181842) | 4181842..4182747 | + | 906 | WP_001335841.1 | dihydrodipicolinate synthase family protein | - |
| CA898_RS20290 (4182758) | 4182758..4184725 | + | 1968 | WP_000116326.1 | xylonate dehydratase YjhG | - |
| CA898_RS20295 (4184832) | 4184832..4186181 | + | 1350 | WP_001128363.1 | GntP family permease | - |
| CA898_RS20300 (4186528) | 4186528..4187514 | + | 987 | WP_000373366.1 | sugar-binding transcriptional regulator | - |
| CA898_RS20305 (4187555) | 4187555..4188400 | - | 846 | WP_016247886.1 | GRP family sugar transporter | - |
| CA898_RS20310 (4188721) | 4188721..4189418 | - | 698 | Protein_3991 | IS1 family transposase | - |
| CA898_RS20315 (4189505) | 4189505..4189573 | - | 69 | WP_211180522.1 | protein YkiE | - |
| CA898_RS20320 (4189710) | 4189710..4190231 | + | 522 | WP_116335647.1 | RNA polymerase sigma factor FecI | - |
| CA898_RS20325 (4190228) | 4190228..4191181 | + | 954 | WP_001068910.1 | ferric citrate uptake sigma factor regulator FecR | - |
| CA898_RS20330 (4191268) | 4191268..4193592 | + | 2325 | WP_061353185.1 | TonB-dependent Fe(3+) dicitrate receptor FecA | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|