MGE detailed information
MGE type: Prophage MGE length: 63221 bp
Accession: NZ_CP042901 Location: 2321580..2384800 Organism: Escherichia coli strain CFSAN061762 Replicon: chromosome
Accession: NZ_CP042901 Location: 2321580..2384800 Organism: Escherichia coli strain CFSAN061762 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CA898_RS11050 (2317479) | 2317479..2318699 | + | 1221 | WP_000225276.1 | DNA-binding transcriptional repressor Mlc | - |
| CA898_RS11055 (2318824) | 2318824..2319519 | + | 696 | WP_000919226.1 | dethiobiotin synthase | - |
| CA898_RS11060 (2319472) | 2319472..2320764 | - | 1293 | WP_071593517.1 | voltage-gated ClC-type chloride channel ClcB | - |
| CA898_RS11065 (2320923) | 2320923..2321537 | - | 615 | WP_000148710.1 | Tat proofreading chaperone DmsD | - |
| CA898_RS11070 (2321580) | 2321580..2322434 | - | 855 | WP_000526503.1 | dimethyl sulfoxide reductase anchor subunit family protein | - |
| CA898_RS11075 (2322436) | 2322436..2323053 | - | 618 | WP_000213028.1 | dimethylsulfoxide reductase subunit B | - |
| CA898_RS11080 (2323064) | 2323064..2325487 | - | 2424 | WP_001340362.1 | DmsA/YnfE/YnfF family dimethyl sulfoxide reductase | - |
| CA898_RS11085 (2325548) | 2325548..2327974 | - | 2427 | WP_001556618.1 | DmsA/YnfE/YnfF family dimethyl sulfoxide reductase | - |
| CA898_RS11090 (2328173) | 2328173..2328478 | - | 306 | WP_001300836.1 | DUF1161 domain-containing protein | - |
| CA898_RS11095 (2328586) | 2328586..2329296 | + | 711 | WP_001321287.1 | YnfC family lipoprotein | - |
| CA898_RS11100 (2329299) | 2329299..2329859 | - | 561 | WP_001138581.1 | spermidine N1-acetyltransferase | - |
| CA898_RS11105 (2329894) | 2329894..2330235 | - | 342 | WP_000705211.1 | DUF1283 family protein | - |
| CA898_RS11110 (2330370) | 2330370..2330696 | + | 327 | WP_000598292.1 | YnfA family protein | - |
| CA898_RS11115 (2330902) | 2330902..2332116 | + | 1215 | WP_001295394.1 | starvation-sensing protein RspA | - |
| CA898_RS11120 (2332128) | 2332128..2333147 | + | 1020 | WP_000836066.1 | Zn-dependent oxidoreductase | - |
| CA898_RS11125 (2333335) | 2333335..2334615 | - | 1281 | WP_000876958.1 | site-specific integrase | - |
| CA898_RS11130 (2334650) | 2334650..2334901 | - | 252 | WP_000005552.1 | excisionase family protein | - |
| CA898_RS11135 (2334974) | 2334974..2337445 | - | 2472 | WP_000048342.1 | exonuclease | - |
| CA898_RS11140 (2337538) | 2337538..2337729 | - | 192 | WP_001083297.1 | lysis protein YdfD | - |
| CA898_RS11145 (2337726) | 2337726..2337914 | - | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| CA898_RS11150 (2338482) | 2338482..2338700 | - | 219 | WP_001171942.1 | protein YdfC | - |
| CA898_RS24000 (2338730) | 2338730..2338858 | - | 129 | WP_000344964.1 | protein YdfB | - |
| CA898_RS11155 (2338860) | 2338860..2339015 | - | 156 | WP_000379575.1 | DUF1391 family protein | - |
| CA898_RS11160 (2339182) | 2339182..2339589 | - | 408 | WP_000448564.1 | DNA-binding transcriptional dual regulator DicA | - |
| CA898_RS11165 (2339673) | 2339673..2339903 | + | 231 | WP_000920568.1 | dicB transcriptional regulator DicC | - |
| CA898_RS11170 (2339887) | 2339887..2340408 | + | 522 | WP_000705358.1 | toxin YdaT family protein | - |
| CA898_RS11175 (2340389) | 2340389..2341354 | + | 966 | WP_000054512.1 | hypothetical protein | - |
| CA898_RS11180 (2341395) | 2341395..2341817 | + | 423 | WP_001151262.1 | DUF977 family protein | - |
| CA898_RS11185 (2341814) | 2341814..2342303 | + | 490 | Protein_2192 | class I SAM-dependent methyltransferase | - |
| CA898_RS11190 (2342560) | 2342560..2344173 | - | 1614 | WP_001556616.1 | IS66-like element ISEc23 family transposase | - |
| CA898_RS11195 (2344204) | 2344204..2344554 | - | 351 | WP_000624722.1 | IS66 family insertion sequence element accessory protein TnpB | - |
| CA898_RS11200 (2344551) | 2344551..2344976 | - | 426 | WP_000422741.1 | transposase | - |
| CA898_RS11205 (2345321) | 2345321..2345742 | + | 422 | Protein_2196 | hypothetical protein | - |
| CA898_RS11210 (2346398) | 2346398..2347420 | + | 1023 | Protein_2197 | ISNCY family transposase | - |
| CA898_RS24005 (2347541) | 2347541..2347690 | + | 150 | WP_011443592.1 | protein YdfW | - |
| CA898_RS11215 (2348127) | 2348127..2348459 | - | 333 | WP_001301033.1 | FlxA-like family protein | - |
| CA898_RS11220 (2348662) | 2348662..2348967 | - | 306 | WP_001326990.1 | protein YdfV | - |
| CA898_RS11225 (2348992) | 2348992..2349231 | + | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| CA898_RS11230 (2349231) | 2349231..2349518 | + | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| CA898_RS11235 (2349590) | 2349590..2349745 | + | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| CA898_RS11240 (2349962) | 2349962..2350213 | + | 252 | WP_000980994.1 | protein Rem | - |
| CA898_RS11245 (2350280) | 2350280..2350558 | + | 279 | WP_012304870.1 | hypothetical protein | - |
| CA898_RS11250 (2350560) | 2350560..2351609 | + | 1050 | Protein_2206 | DUF968 domain-containing protein | - |
| CA898_RS11255 (2351623) | 2351623..2352375 | + | 753 | WP_001556615.1 | antitermination protein | - |
| CA898_RS11260 (2352653) | 2352653..2352742 | - | 90 | WP_120795389.1 | hypothetical protein | - |
| CA898_RS11265 (2352797) | 2352797..2353009 | - | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| CA898_RS11270 (2353310) | 2353310..2353525 | + | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| CA898_RS11275 (2353889) | 2353889..2354059 | - | 171 | WP_211180497.1 | putative zinc-binding protein YnfU | - |
| CA898_RS11280 (2354279) | 2354279..2354494 | + | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| CA898_RS11285 (2354499) | 2354499..2354810 | + | 312 | WP_000189916.1 | YdfR family protein | - |
| CA898_RS11290 (2354807) | 2354807..2355340 | + | 534 | WP_001556614.1 | lysozyme | - |
| CA898_RS11295 (2355337) | 2355337..2355834 | + | 498 | WP_001071769.1 | DUF2514 domain-containing protein | - |
| CA898_RS11300 (2356197) | 2356197..2356409 | + | 213 | WP_000066495.1 | cold shock protein CspI | - |
| CA898_RS11305 (2356420) | 2356420..2356608 | + | 189 | WP_071524604.1 | cold-shock protein | - |
| CA898_RS11310 (2356611) | 2356611..2356676 | + | 66 | WP_120795388.1 | small protein YnfR | - |
| CA898_RS11315 (2356756) | 2356756..2356911 | + | 156 | WP_001309517.1 | protein YnfN | - |
| CA898_RS11320 (2357083) | 2357083..2357256 | + | 174 | WP_001019606.1 | addiction module toxin, GnsA/GnsB family | - |
| CA898_RS11325 (2357408) | 2357408..2357818 | - | 411 | WP_000373090.1 | DUF1398 domain-containing protein | - |
| CA898_RS11330 (2357876) | 2357876..2358109 | - | 234 | WP_001368374.1 | YlcI/YnfO family protein | - |
| CA898_RS11335 (2358498) | 2358498..2359043 | + | 546 | WP_000453611.1 | DNA-packaging protein | - |
| CA898_RS11340 (2359018) | 2359018..2360943 | + | 1926 | WP_001027259.1 | phage terminase large subunit family protein | - |
| CA898_RS11345 (2360940) | 2360940..2361146 | + | 207 | WP_000198149.1 | gpW family protein | - |
| CA898_RS11350 (2361143) | 2361143..2362744 | + | 1602 | WP_001349919.1 | phage portal protein | - |
| CA898_RS11355 (2362725) | 2362725..2364044 | + | 1320 | WP_000123262.1 | S49 family peptidase | - |
| CA898_RS11360 (2364054) | 2364054..2364386 | + | 333 | WP_001556613.1 | head decoration protein | - |
| CA898_RS11365 (2364442) | 2364442..2365467 | + | 1026 | WP_052934322.1 | major capsid protein | - |
| CA898_RS11370 (2365509) | 2365509..2365907 | + | 399 | WP_000158905.1 | DNA-packaging protein FI | - |
| CA898_RS11375 (2365919) | 2365919..2366272 | + | 354 | WP_000753007.1 | head-tail joining protein | - |
| CA898_RS11380 (2366284) | 2366284..2366862 | + | 579 | WP_000975070.1 | phage tail protein | - |
| CA898_RS11385 (2366859) | 2366859..2367254 | + | 396 | WP_000683105.1 | phage minor tail U family protein | - |
| CA898_RS11390 (2367262) | 2367262..2368002 | + | 741 | WP_001349920.1 | phage tail protein | - |
| CA898_RS11395 (2368018) | 2368018..2368440 | + | 423 | WP_000479150.1 | phage minor tail protein G | - |
| CA898_RS11400 (2368422) | 2368422..2368856 | + | 435 | WP_000459457.1 | phage tail assembly protein T | - |
| CA898_RS11405 (2368849) | 2368849..2371410 | + | 2562 | WP_000840335.1 | phage tail tape measure protein | - |
| CA898_RS11410 (2371407) | 2371407..2371736 | + | 330 | WP_000847360.1 | phage tail protein | - |
| CA898_RS11415 (2371736) | 2371736..2372434 | + | 699 | WP_001152639.1 | phage minor tail protein L | - |
| CA898_RS11420 (2372440) | 2372440..2373183 | + | 744 | WP_000194780.1 | C40 family peptidase | - |
| CA898_RS11425 (2373180) | 2373180..2373752 | + | 573 | WP_001556603.1 | tail assembly protein | - |
| CA898_RS11430 (2373813) | 2373813..2377211 | + | 3399 | WP_021563674.1 | host specificity protein J | - |
| CA898_RS11435 (2377278) | 2377278..2377829 | + | 552 | WP_061353042.1 | Ail/Lom family outer membrane beta-barrel protein | - |
| CA898_RS11440 (2377894) | 2377894..2380917 | + | 3024 | WP_024195673.1 | phage tail protein | - |
| CA898_RS11445 (2380917) | 2380917..2381492 | + | 576 | WP_000885587.1 | tail fiber assembly protein | - |
| CA898_RS11450 (2381590) | 2381590..2382180 | - | 591 | WP_000086527.1 | recombinase family protein | - |
| CA898_RS11455 (2382497) | 2382497..2382730 | - | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| CA898_RS11460 (2382799) | 2382799..2382912 | - | 114 | WP_120795384.1 | YnaM/YnfT family protein | - |
| CA898_RS11465 (2383517) | 2383517..2384800 | + | 1284 | Protein_2249 | MHS family MFS transporter YdfJ | - |
| CA898_RS11470 (2384889) | 2384889..2386349 | + | 1461 | WP_000527809.1 | mannitol dehydrogenase family protein | - |
| CA898_RS11475 (2386384) | 2386384..2386587 | - | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| CA898_RS11480 (2386764) | 2386764..2387450 | - | 687 | WP_000215549.1 | DNA-binding transcriptional regulator rspR | - |
| CA898_RS11485 (2387539) | 2387539..2388285 | - | 747 | WP_116335577.1 | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|