MGE detailed information
MGE type: Prophage MGE length: 24231 bp
Accession: NZ_CP041511 Location: 2482203..2506433 Organism: Shigella sonnei strain KCCM 41282 Replicon: chromosome
Accession: NZ_CP041511 Location: 2482203..2506433 Organism: Shigella sonnei strain KCCM 41282 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FNA55_RS12335 () | 2478286..2478927 | + | 642 | WP_000800512.1 | bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase | - |
| FNA55_RS12340 () | 2478983..2480161 | - | 1179 | WP_000173484.1 | formate-dependent phosphoribosylglycinamide formyltransferase | - |
| FNA55_RS12345 () | 2480295..2480585 | + | 291 | WP_000257738.1 | DNA damage-inducible protein YebG | - |
| FNA55_RS12350 () | 2480652..2481008 | + | 357 | WP_001295500.1 | protein YebF | - |
| FNA55_RS12355 () | 2481335..2481994 | + | 660 | WP_000024745.1 | tellurite resistance TerB family protein | - |
| FNA55_RS12360 () | 2482203..2484263 | + | 2061 | WP_000936913.1 | oligopeptidase B | - |
| FNA55_RS12365 () | 2484260..2484922 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| FNA55_RS12370 () | 2484946..2485602 | - | 657 | WP_000011652.1 | carbon-nitrogen hydrolase family protein YobB | - |
| FNA55_RS12375 () | 2485704..2485934 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| FNA55_RS12380 () | 2486073..2486447 | + | 375 | WP_000168735.1 | CopC domain-containing protein YobA | - |
| FNA55_RS12385 () | 2486451..2487323 | + | 873 | WP_000879296.1 | copper homeostasis membrane protein CopD | - |
| FNA55_RS12390 () | 2487336..2487677 | + | 342 | WP_000976476.1 | YebY family protein | - |
| - | 2487705..2487939 | - | 235 | - | - | Antitoxin Detail |
| - | 2487835..2487938 | + | 104 | - | - | Toxin Detail |
| FNA55_RS12395 () | 2488070..2489146 | - | 1077 | WP_140046268.1 | hypothetical protein ; Integrase | Integrase |
| FNA55_RS12415 () | 2491242..2491358 | - | 117 | Protein_2377 | host-nuclease inhibitor Gam family protein | - |
| FNA55_RS12420 () | 2491336..2491656 | - | 321 | WP_241556168.1 | exodeoxyribonuclease VIII | - |
| FNA55_RS12430 () | 2491904..2493060 | + | 1157 | WP_094096605.1 | IS3 family transposase IS600 | Transposase |
| FNA55_RS12445 () | 2494428..2496134 | - | 1707 | WP_000936825.1 | E3 ubiquitin-protein ligase ipaH3 | VF |
| FNA55_RS12460 () | 2498152..2498325 | + | 174 | Protein_2383 | metallophosphoesterase | - |
| FNA55_RS12470 () | 2499091..2499396 | + | 306 | Protein_2385 | serine/threonine-protein phosphatase | - |
| FNA55_RS12475 () | 2499454..2500610 | + | 1157 | WP_094096605.1 | IS3 family transposase IS600 | Transposase |
| FNA55_RS12480 () | 2500652..2500852 | + | 201 | Protein_2387 | serine/threonine-protein phosphatase | - |
| FNA55_RS12485 () | 2500853..2501044 | - | 192 | WP_001296140.1 | YebW family protein | - |
| FNA55_RS12490 () | 2501149..2501307 | - | 159 | Protein_2389 | YebV family protein | - |
| FNA55_RS12495 () | 2501365..2502062 | + | 698 | WP_094096600.1 | IS1-like element IS1A family transposase | - |
| FNA55_RS25405 () | 2502079..2502162 | - | 84 | Protein_2391 | DUF1480 family protein | - |
| FNA55_RS12500 () | 2502280..2503719 | - | 1440 | WP_005138560.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| FNA55_RS12505 () | 2503800..2506433 | - | 2634 | WP_005138565.1 | hypothetical protein | VF |
| FNA55_RS12510 () | 2506402..2507685 | - | 1284 | WP_001207284.1 | membrane integrity lipid transport subunit YebS | - |
| FNA55_RS12515 () | 2507815..2508312 | + | 498 | WP_001043882.1 | L-methionine (R)-S-oxide reductase | - |
| FNA55_RS12520 () | 2508409..2509107 | + | 699 | WP_000431370.1 | RNA chaperone ProQ | - |
| FNA55_RS12525 () | 2509127..2511175 | + | 2049 | WP_011310196.1 | carboxy terminal-processing peptidase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|