MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 169031 bp
Accession: NZ_CP040243 Location: 624509..793539 Organism: Glaesserella parasuis strain HPS-1 Replicon: chromosome
Accession: NZ_CP040243 Location: 624509..793539 Organism: Glaesserella parasuis strain HPS-1 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FEF05_RS03285 () | 620255..622303 | - | 2049 | Protein_624 | cadmium-translocating P-type ATPase | - |
| FEF05_RS03290 () | 622460..622834 | - | 375 | WP_005710423.1 | Soluble cytochrome b562 | - |
| FEF05_RS03295 () | 622911..624128 | - | 1218 | WP_005710425.1 | beta-ketoacyl-ACP synthase I | - |
| FEF05_RS03300 () | 624292..625590 | - | 1299 | WP_005710426.1 | adenylosuccinate synthase | - |
| FEF05_RS03305 () | 625873..626760 | - | 888 | WP_005710428.1 | protease modulator HflC | - |
| FEF05_RS03310 () | 626763..627977 | - | 1215 | WP_010786044.1 | FtsH protease activity modulator HflK | - |
| FEF05_RS03315 () | 628223..628894 | + | 672 | WP_010786043.1 | dTDP-4-amino-4,6-dideoxy-D-galactose acyltransferase | - |
| FEF05_RS03320 () | 628891..630030 | + | 1140 | WP_173652504.1 | dTDP-4-amino-4,6-dideoxygalactose transaminase | VF |
| FEF05_RS03325 () | 630152..630664 | - | 513 | WP_038514490.1 | hypothetical protein | - |
| FEF05_RS03330 () | 630666..630866 | - | 201 | WP_038514487.1 | hypothetical protein | - |
| FEF05_RS03335 () | 630882..631656 | - | 775 | Protein_634 | putative ABC transporter permease protein | VF |
| FEF05_RS03340 () | 631843..633231 | + | 1389 | WP_149350718.1 | TolC family protein | - |
| FEF05_RS03345 () | 633291..633941 | - | 651 | WP_026916791.1 | ribonuclease T | - |
| FEF05_RS03350 () | 633941..634345 | - | 405 | WP_149350719.1 | lactoylglutathione lyase | - |
| FEF05_RS03355 () | 634426..635250 | + | 825 | WP_149350720.1 | hypothetical protein | - |
| FEF05_RS03360 () | 635251..637968 | + | 2718 | WP_149350721.1 | YdbH family protein | - |
| FEF05_RS03365 () | 638019..639419 | - | 1401 | WP_149350722.1 | DUF560 domain-containing protein | - |
| FEF05_RS03370 () | 639490..639726 | + | 237 | WP_021119428.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| FEF05_RS03375 () | 639674..639988 | + | 315 | WP_149350723.1 | DNA-binding transcriptional regulator | - |
| FEF05_RS03380 () | 640022..641665 | - | 1644 | WP_149350724.1 | transferrin-binding protein-like solute binding protein | - |
| FEF05_RS03385 () | 641813..642196 | + | 384 | WP_149350725.1 | helix-turn-helix domain-containing protein | - |
| FEF05_RS03390 () | 642233..642415 | + | 183 | WP_016528315.1 | YnbE family lipoprotein | - |
| FEF05_RS03395 () | 642495..644762 | - | 2268 | WP_149350726.1 | NADP-dependent malic enzyme | - |
| FEF05_RS03400 () | 645052..645378 | - | 327 | WP_010786031.1 | Grx4 family monothiol glutaredoxin | - |
| FEF05_RS03405 () | 645499..647460 | - | 1962 | WP_149350727.1 | exodeoxyribonuclease V subunit alpha | - |
| FEF05_RS03410 () | 647550..649676 | - | 2127 | WP_149350728.1 | Heme/hemopexin utilization protein C | VF |
| FEF05_RS03415 () | 649823..651517 | + | 1695 | WP_149350729.1 | Heme/hemopexin transporter protein HuxB | VF |
| FEF05_RS03420 () | 651533..654448 | + | 2916 | WP_149350730.1 | Heme/hemopexin-binding protein | VF |
| FEF05_RS03425 () | 654535..655974 | - | 1440 | WP_021110436.1 | pyruvate kinase | - |
| FEF05_RS03430 () | 656102..656593 | + | 492 | WP_015940104.1 | phosphohistidine phosphatase SixA | - |
| FEF05_RS03435 () | 656741..658105 | + | 1365 | WP_015940105.1 | Hexose-6-phosphate:phosphate antiporter | VF |
| FEF05_RS03440 () | 658188..658595 | + | 408 | WP_075605381.1 | Transcriptional regulatory protein UhpA | VF |
| FEF05_RS03445 () | 658592..660082 | + | 1491 | WP_149350731.1 | signal transduction histidine-protein kinase/phosphatase UhpB | - |
| FEF05_RS03450 () | 660088..661349 | + | 1262 | Protein_657 | MFS transporter family glucose-6-phosphate receptor UhpC | - |
| FEF05_RS03455 () | 661473..662438 | - | 966 | WP_010786020.1 | 6-phosphofructokinase | - |
| FEF05_RS03460 () | 662560..663756 | - | 1197 | WP_149350732.1 | cysteine desulfurase | - |
| FEF05_RS03465 () | 663753..664442 | - | 690 | WP_149350733.1 | thermonuclease family protein | - |
| FEF05_RS03470 () | 664632..665558 | + | 927 | WP_149350734.1 | HTH-type transcriptional regulator MetR | VF |
| FEF05_RS03475 () | 665629..666951 | - | 1323 | WP_149350735.1 | Xaa-Pro dipeptidase | - |
| FEF05_RS03480 () | 666987..667235 | + | 249 | WP_005710491.1 | sulfurtransferase TusA | - |
| FEF05_RS03485 () | 667221..668753 | - | 1533 | WP_005710493.1 | methyltransferase regulatory domain-containing protein | - |
| FEF05_RS03490 () | 668834..669259 | - | 426 | WP_005710495.1 | ribonuclease E inhibitor RraB | - |
| FEF05_RS03495 () | 669264..669893 | - | 630 | WP_010786014.1 | ribosome biogenesis GTP-binding protein YihA/YsxC | - |
| FEF05_RS03500 () | 670050..670466 | - | 417 | WP_149350736.1 | DUF805 domain-containing protein | - |
| FEF05_RS03505 () | 670466..673075 | - | 2610 | WP_149350737.1 | aminopeptidase N | - |
| FEF05_RS03510 () | 673142..673825 | - | 684 | WP_021113363.1 | YggS family pyridoxal phosphate-dependent enzyme | - |
| FEF05_RS03515 () | 673893..674432 | + | 540 | WP_021110446.1 | HAD-IIIA family hydrolase | - |
| FEF05_RS03520 () | 674472..675023 | + | 552 | WP_021119440.1 | oligoribonuclease | - |
| FEF05_RS03525 () | 675029..675517 | + | 489 | WP_005710509.1 | tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE | - |
| FEF05_RS03530 () | 675527..676639 | + | 1113 | WP_010786009.1 | N-acetylmuramoyl-L-alanine amidase | - |
| FEF05_RS03535 () | 676712..677419 | + | 708 | WP_035499332.1 | YwiC-like family protein | - |
| FEF05_RS03540 () | 677443..678186 | - | 744 | WP_005710515.1 | YdcF family protein | - |
| FEF05_RS03545 () | 678322..678999 | + | 678 | WP_016528291.1 | N-acylneuraminate cytidylyltransferase | VF |
| FEF05_RS03550 () | 679130..679636 | + | 507 | WP_149350738.1 | hypothetical protein | - |
| FEF05_RS03555 () | 679629..680513 | + | 885 | WP_021110450.1 | UDP-Glc:alpha-D-GlcNAc-diphosphoundecaprenol beta-1,3-glucosyltransferase WfgD | VF |
| FEF05_RS03560 () | 680513..681310 | + | 798 | WP_149350739.1 | UDP-Gal:alpha-D-GlcNAc-diphosphoundecaprenol beta-1,3-galactosyltransferase | VF |
| FEF05_RS03565 () | 681439..683379 | - | 1941 | WP_149350740.1 | Cytochrome c-type biogenesis protein CcmF | VF |
| FEF05_RS03570 () | 683376..683909 | - | 534 | WP_005710526.1 | Cytochrome c-type biogenesis protein CcmE | VF |
| FEF05_RS03575 () | 684436..685809 | - | 1374 | WP_038514433.1 | Re/Si-specific NAD(P)(+) transhydrogenase subunit beta | - |
| FEF05_RS03580 () | 685821..687353 | - | 1533 | WP_149350741.1 | Re/Si-specific NAD(P)(+) transhydrogenase subunit alpha | - |
| FEF05_RS03585 () | 687632..688684 | + | 1053 | WP_149350742.1 | rod shape-determining protein | - |
| FEF05_RS03590 () | 688776..689825 | + | 1050 | WP_149350743.1 | rod shape-determining protein MreC | - |
| FEF05_RS03595 () | 689825..690313 | + | 489 | WP_005710534.1 | rod shape-determining protein MreD | - |
| FEF05_RS03600 () | 690313..691656 | + | 1344 | WP_021115626.1 | replication-associated recombination protein A | - |
| FEF05_RS03605 () | 691659..693119 | - | 1461 | WP_075620583.1 | DUF560 domain-containing protein | - |
| FEF05_RS03610 () | 693293..694060 | + | 768 | WP_149350744.1 | energy transducer TonB | - |
| FEF05_RS03615 () | 694078..694746 | + | 669 | WP_016528281.1 | MotA/TolQ/ExbB proton channel family protein | - |
| FEF05_RS03620 () | 694746..695156 | + | 411 | WP_149350745.1 | biopolymer transporter ExbD | - |
| FEF05_RS03625 () | 695184..696821 | + | 1638 | WP_149350746.1 | transferrin-binding protein-like solute binding protein | - |
| FEF05_RS03630 () | 696835..699543 | + | 2709 | WP_149350747.1 | Transferrin-binding protein 1 | VF |
| FEF05_RS03635 () | 699964..700290 | - | 327 | WP_005710552.1 | ribosome-associated translation inhibitor RaiA | - |
| FEF05_RS03640 () | 700466..700777 | + | 312 | WP_021113388.1 | DUF4298 domain-containing protein | - |
| FEF05_RS03645 () | 700777..701712 | + | 936 | WP_010785995.1 | Lipid A biosynthesis lauroyltransferase | VF |
| FEF05_RS03650 () | 701834..702427 | + | 594 | WP_149351284.1 | dITP/XTP pyrophosphatase | VF |
| FEF05_RS03655 () | 702435..702620 | + | 186 | WP_005710560.1 | heavy metal-binding domain-containing protein | - |
| FEF05_RS03660 () | 702620..703075 | + | 456 | WP_149350748.1 | YcgN family cysteine cluster protein | - |
| FEF05_RS03665 () | 703120..705135 | - | 2016 | WP_149350749.1 | excinuclease ABC subunit B | - |
| FEF05_RS03670 () | 705314..707890 | + | 2577 | WP_149351285.1 | bifunctional uridylyltransferase/uridylyl-removing protein GlnD | - |
| FEF05_RS03675 () | 707974..708864 | + | 891 | WP_021110465.1 | ABC transporter permease subunit | - |
| FEF05_RS03680 () | 708877..709908 | + | 1032 | WP_149350750.1 | ATP-binding cassette domain-containing protein | - |
| FEF05_RS03685 () | 710136..711446 | + | 1311 | WP_149350751.1 | phosphopyruvate hydratase | - |
| FEF05_RS03690 () | 711816..712307 | + | 492 | WP_005710574.1 | YajQ family cyclic di-GMP-binding protein | - |
| FEF05_RS03695 () | 712425..714326 | + | 1902 | WP_149350752.1 | DNA topoisomerase IV subunit B | - |
| FEF05_RS03700 () | 714457..715905 | + | 1449 | WP_149350753.1 | Catalase | VF |
| FEF05_RS03705 () | 716000..717085 | + | 1086 | WP_149350754.1 | metallophosphoesterase | - |
| FEF05_RS03710 () | 717158..717604 | - | 447 | WP_005710580.1 | macrodomain Ter protein MatP | - |
| FEF05_RS03715 () | 717681..719315 | + | 1635 | WP_078208313.1 | AAA family ATPase | - |
| FEF05_RS03720 () | 719436..719966 | + | 531 | WP_005710584.1 | bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase | - |
| FEF05_RS03725 () | 720055..720564 | + | 510 | WP_010785984.1 | type II secretion system GspH family protein | - |
| FEF05_RS03730 () | 720530..721225 | + | 696 | WP_149350755.1 | hypothetical protein | - |
| FEF05_RS03735 () | 721222..721881 | + | 660 | WP_075592854.1 | DUF2572 family protein | - |
| FEF05_RS03740 () | 721874..722170 | + | 297 | WP_021116569.1 | DUF5374 domain-containing protein | - |
| FEF05_RS03745 () | 722376..725396 | + | 3021 | WP_149350756.1 | DUF4981 domain-containing protein | - |
| FEF05_RS03750 () | 725469..726860 | - | 1392 | WP_035490234.1 | MATE family efflux transporter | - |
| FEF05_RS03755 () | 726873..727541 | - | 669 | WP_021118711.1 | bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA | - |
| FEF05_RS03760 () | 727547..727891 | - | 345 | WP_021114594.1 | endoribonuclease MazF | Toxin Detail |
| FEF05_RS03765 () | 727888..728127 | - | 240 | WP_005710601.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | Antitoxin Detail |
| FEF05_RS03770 () | 728313..729188 | + | 876 | WP_021113313.1 | putative selenate ABC transporter substrate-binding protein | - |
| FEF05_RS03775 () | 729300..730049 | + | 750 | WP_149350757.1 | Glutamine transport ATP-binding protein GlnQ | VF |
| FEF05_RS03780 () | 730039..730824 | + | 786 | WP_149350758.1 | ABC transporter permease subunit | - |
| FEF05_RS03785 () | 730821..731669 | + | 849 | WP_149350759.1 | ABC transporter permease subunit | - |
| FEF05_RS03790 () | 731731..732423 | + | 693 | WP_010785974.1 | tellurite resistance TerB family protein | - |
| FEF05_RS03795 () | 732972..733574 | + | 603 | WP_005710612.1 | RNA pyrophosphohydrolase | - |
| FEF05_RS03800 () | 733574..734368 | + | 795 | WP_005710614.1 | sulfite exporter TauE/SafE family protein | - |
| FEF05_RS03805 () | 734378..735181 | + | 804 | WP_005710616.1 | prolipoprotein diacylglyceryl transferase | - |
| FEF05_RS03810 () | 735378..735671 | + | 294 | WP_005710618.1 | LexA regulated protein | - |
| FEF05_RS03815 () | 735681..736205 | + | 525 | WP_005710620.1 | flavodoxin FldA | - |
| FEF05_RS03820 () | 736225..736671 | + | 447 | WP_015940142.1 | ferric iron uptake transcriptional regulator | - |
| FEF05_RS03825 () | 736771..739434 | + | 2664 | WP_021116580.1 | hypothetical protein | VF |
| FEF05_RS03830 () | 739877..740104 | + | 228 | Protein_733 | transposase | - |
| FEF05_RS03835 () | 740126..740779 | + | 654 | WP_149350760.1 | IS1595 family transposase IS1016C2 | Transposase |
| FEF05_RS03840 () | 741000..741536 | + | 537 | WP_005712550.1 | RNA chaperone ProQ | - |
| FEF05_RS03845 () | 741556..743562 | + | 2007 | WP_149350761.1 | carboxy terminal-processing peptidase | - |
| FEF05_RS03850 () | 743648..745197 | + | 1550 | Protein_737 | L,D-transpeptidase family protein | - |
| FEF05_RS03855 () | 745342..745899 | + | 558 | WP_021115642.1 | YcbK family protein | - |
| FEF05_RS03860 () | 745913..746542 | + | 630 | WP_005712541.1 | MBL fold metallo-hydrolase | - |
| FEF05_RS03865 () | 746547..747293 | + | 747 | WP_005712539.1 | VacJ family lipoprotein | - |
| FEF05_RS03870 () | 747402..747836 | + | 435 | WP_010785965.1 | transcriptional regulator | - |
| FEF05_RS03880 () | 748395..749501 | - | 1107 | WP_071610830.1 | Cystathionine gamma-synthase/O-acetylhomoserine (thiol)-lyase | VF |
| FEF05_RS03885 () | 749549..750361 | - | 813 | WP_026917111.1 | 4-hydroxy-tetrahydrodipicolinate reductase | - |
| FEF05_RS03890 () | 750496..751377 | - | 882 | WP_021110489.1 | methylenetetrahydrofolate reductase | - |
| FEF05_RS03895 () | 751689..752936 | + | 1248 | WP_021110490.1 | NADP-dependent isocitrate dehydrogenase | - |
| FEF05_RS03900 () | 753085..755691 | + | 2607 | WP_149351286.1 | bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase | - |
| FEF05_RS03905 () | 755727..757007 | + | 1281 | WP_021110491.1 | citrate synthase | - |
| FEF05_RS03910 () | 757086..757730 | - | 645 | WP_149350762.1 | adenylate kinase | - |
| FEF05_RS03915 () | 757840..759198 | - | 1359 | WP_149350763.1 | sodium-dependent transporter | - |
| FEF05_RS03920 () | 759227..760045 | - | 819 | WP_021112063.1 | Dam family site-specific DNA-(adenine-N6)-methyltransferase | - |
| FEF05_RS03925 () | 760055..761143 | - | 1089 | WP_149350764.1 | 3-dehydroquinate synthase | - |
| FEF05_RS03930 () | 761158..761679 | - | 522 | WP_005712514.1 | shikimate kinase AroK | - |
| FEF05_RS03935 () | 761909..764464 | - | 2556 | WP_035490200.1 | PBP1A family penicillin-binding protein | - |
| FEF05_RS03940 () | 764618..765295 | + | 678 | WP_005712510.1 | hypothetical protein | - |
| FEF05_RS03945 () | 765271..765792 | + | 522 | WP_005712507.1 | hypothetical protein | - |
| FEF05_RS03950 () | 765789..766319 | + | 531 | WP_149350765.1 | ATPase | - |
| FEF05_RS03955 () | 766319..766705 | + | 387 | WP_149350766.1 | pilus assembly protein PilP | - |
| FEF05_RS03960 () | 766715..767977 | + | 1263 | WP_026917118.1 | Type IV pilus biogenesis and competence protein PilQ | VF |
| FEF05_RS03965 () | 768056..768469 | + | 414 | WP_005712500.1 | transcription antitermination factor NusB | - |
| FEF05_RS03970 () | 768478..769446 | + | 969 | WP_021110497.1 | thiamine-phosphate kinase | - |
| FEF05_RS03975 () | 769449..769919 | + | 471 | WP_005712497.1 | phosphatidylglycerophosphatase A | - |
| FEF05_RS03980 () | 769921..770550 | + | 630 | WP_010785950.1 | LysE family transporter | - |
| FEF05_RS03985 () | 770847..771161 | + | 315 | WP_149350767.1 | thioredoxin | - |
| FEF05_RS03990 () | 771706..772354 | + | 649 | Protein_764 | transposase | - |
| FEF05_RS03995 () | 772545..772964 | - | 420 | WP_005714137.1 | hotdog fold thioesterase | - |
| FEF05_RS04000 () | 773296..776388 | - | 3093 | WP_149350768.1 | FAD-binding oxidoreductase | - |
| FEF05_RS04005 () | 776792..777889 | + | 1098 | WP_149350769.1 | Outer membrane protein P5 | VF |
| FEF05_RS04010 () | 777971..778366 | - | 396 | WP_005714128.1 | Peptide methionine sulfoxide reductase MsrB | VF |
| FEF05_RS04015 () | 778596..779615 | + | 1020 | WP_010785946.1 | type I glyceraldehyde-3-phosphate dehydrogenase | - |
| FEF05_RS04020 () | 779708..780220 | - | 513 | WP_149350770.1 | IS91 family transposase ISSde12 | Transposase |
| FEF05_RS04025 () | 780562..783228 | + | 2667 | WP_149350771.1 | DNA topoisomerase (ATP-hydrolyzing) subunit A | - |
| FEF05_RS04035 () | 783633..786767 | - | 3135 | WP_149350772.1 | Autotransporter adhesin UpaG | VF |
| FEF05_RS04045 () | 787777..789561 | + | 1785 | WP_149350773.1 | fumarate reductase (quinol) flavoprotein subunit | - |
| FEF05_RS04050 () | 789568..790338 | + | 771 | WP_005712724.1 | succinate dehydrogenase/fumarate reductase iron-sulfur subunit | - |
| FEF05_RS04055 () | 790351..790743 | + | 393 | WP_044009111.1 | fumarate reductase subunit FrdC | - |
| FEF05_RS04060 () | 790754..791098 | + | 345 | WP_044009110.1 | fumarate reductase subunit FrdD | - |
| FEF05_RS04070 () | 791417..792172 | - | 756 | WP_149350774.1 | sulfate transporter CysZ | - |
| FEF05_RS04075 () | 792281..793099 | + | 819 | WP_149350775.1 | cell division protein ZipA | - |
| FEF05_RS04080 () | 793163..795190 | + | 2028 | WP_149350776.1 | NAD-dependent DNA ligase LigA | - |
| FEF05_RS04085 () | 795248..797077 | - | 1830 | WP_149350777.1 | ATP-dependent DNA helicase RecQ | - |
| FEF05_RS04090 () | 797077..797385 | - | 309 | WP_012621496.1 | iron donor protein CyaY | - |
| FEF05_RS04095 () | 797468..798097 | - | 630 | WP_012621497.1 | transcriptional repressor LexA | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|