MGE detailed information
MGE type: Genomic_island MGE length: 40951 bp
Accession: NZ_CP040172 Location: 2143714..2184664 Organism: Vibrio cholerae strain VC1374 Replicon: chromosome
Accession: NZ_CP040172 Location: 2143714..2184664 Organism: Vibrio cholerae strain VC1374 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FDZ90_RS10580 () | 2138980..2143542 | - | 4563 | WP_000702220.1 | accessory colonization factor AcfD | - |
| FDZ90_RS10585 () | 2143714..2144361 | + | 648 | WP_001173022.1 | accessory colonization factor AcfA | - |
| FDZ90_RS10590 () | 2144364..2145272 | - | 909 | WP_001880634.1 | M23 family metallopeptidase | - |
| FDZ90_RS10595 () | 2145281..2145754 | - | 474 | WP_000287237.1 | RDD family protein | - |
| FDZ90_RS10600 () | 2145770..2146540 | - | 771 | WP_001880633.1 | accessory colonization factor AcfC | - |
| FDZ90_RS10605 () | 2146546..2148426 | - | 1881 | WP_000672505.1 | methyl-accepting chemotaxis protein AcfB | - |
| FDZ90_RS10610 () | 2148433..2149194 | - | 762 | WP_000456980.1 | toxin-coregulated pilus pre-pilin peptidase TcpJ | - |
| FDZ90_RS10615 () | 2149194..2150024 | - | 831 | WP_000579582.1 | pilus/toxin transcriptional regulator ToxT | - |
| FDZ90_RS10620 () | 2150231..2151247 | - | 1017 | WP_025989298.1 | colonization factor TcpF | - |
| FDZ90_RS10625 () | 2151257..2152279 | - | 1023 | WP_000691946.1 | toxin-coregulated pilus assembly protein TcpE | - |
| FDZ90_RS10630 () | 2152254..2153765 | - | 1512 | WP_096068385.1 | toxin-coregulated pilus assembly ATPase TcpT | - |
| FDZ90_RS10635 () | 2153755..2154213 | - | 459 | WP_001022338.1 | toxin-coregulated pilus protein TcpS | - |
| FDZ90_RS10640 () | 2154229..2155065 | - | 837 | WP_001880631.1 | toxin-coregulated pilus protein TcpD | - |
| FDZ90_RS10645 () | 2155053..2155508 | - | 456 | WP_000200904.1 | toxin-coregulated pilus protein TcpR | - |
| FDZ90_RS10650 () | 2155501..2156970 | - | 1470 | WP_000750979.1 | toxin-coregulated pilus secretin TcpC | - |
| FDZ90_RS10655 () | 2156973..2157425 | - | 453 | WP_000742753.1 | toxin-coregulated pilus protein TcpQ | - |
| FDZ90_RS10660 () | 2157425..2158717 | - | 1293 | WP_001234004.1 | toxin-coregulated pilus minor pilin TcpB | - |
| FDZ90_RS10665 () | 2158797..2159471 | - | 675 | WP_025989296.1 | toxin-coregulated pilus major pilin TcpA | - |
| FDZ90_RS10670 () | 2160014..2160424 | - | 411 | WP_000549073.1 | toxin-coregulated pilus protein TcpH | - |
| FDZ90_RS10675 () | 2160409..2161074 | - | 666 | WP_000542596.1 | toxin-coregulated pilus transcriptional regulator TcpP | - |
| FDZ90_RS10680 () | 2161515..2163377 | + | 1863 | WP_000591844.1 | toxin-coregulated pilus methyl-accepting chemotaxis protein TcpI | - |
| FDZ90_RS10685 () | 2163653..2164147 | - | 495 | WP_000218964.1 | thiol peroxidase | - |
| FDZ90_RS10690 () | 2164257..2165195 | - | 939 | WP_001232137.1 | hypothetical protein | - |
| FDZ90_RS10695 () | 2165192..2169793 | - | 4602 | WP_000482254.1 | membrane protein | - |
| FDZ90_RS10700 () | 2169906..2172947 | - | 3042 | WP_001880619.1 | fibronectin type III domain-containing protein | - |
| FDZ90_RS10705 () | 2173127..2174647 | + | 1521 | WP_000640055.1 | aldehyde dehydrogenase | - |
| FDZ90_RS10710 () | 2174989..2175669 | + | 681 | Protein_1907 | IS5 family transposase | - |
| FDZ90_RS10715 () | 2175695..2176672 | - | 978 | WP_001889101.1 | IS481-like element ISVch1 family transposase | - |
| FDZ90_RS10720 () | 2177276..2178637 | + | 1362 | WP_000392003.1 | type II toxin-antitoxin system HipA family toxin | Toxin Detail |
| FDZ90_RS10725 () | 2178634..2179101 | + | 468 | WP_000804849.1 | helix-turn-helix domain-containing protein | Antitoxin Detail |
| FDZ90_RS10730 () | 2179529..2180107 | + | 579 | WP_000109982.1 | class I SAM-dependent methyltransferase | - |
| FDZ90_RS10735 () | 2180111..2183047 | + | 2937 | WP_001283872.1 | DEAD/DEAH box helicase family protein | - |
| FDZ90_RS10740 () | 2183117..2183821 | + | 705 | WP_001880605.1 | NERD domain-containing protein | - |
| FDZ90_RS10745 () | 2184155..2184664 | - | 510 | WP_001077909.1 | hypothetical protein | - |
| FDZ90_RS10750 () | 2184862..2186541 | - | 1680 | WP_001139117.1 | SWIM zinc finger domain-containing protein | - |
| FDZ90_RS10755 () | 2186764..2187447 | + | 684 | WP_000841479.1 | MFS transporter | - |
| FDZ90_RS10760 () | 2187515..2189131 | - | 1617 | WP_000620446.1 | NAD(P)/FAD-dependent oxidoreductase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|