MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 108326 bp
Accession: NZ_CP040067 Location: 4259906..4368231 Organism: Escherichia coli strain A1_181 Replicon: chromosome
Accession: NZ_CP040067 Location: 4259906..4368231 Organism: Escherichia coli strain A1_181 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FDP43_RS20895 () | 4255501..4256802 | + | 1302 | WP_000961959.1 | anaerobic C4-dicarboxylate transporter DcuA | - |
| FDP43_RS20900 () | 4256918..4257256 | + | 339 | WP_000883400.1 | divalent cation tolerance protein CutA | - |
| FDP43_RS20905 () | 4257232..4258929 | + | 1698 | WP_000068978.1 | protein-disulfide reductase DsbD | - |
| FDP43_RS20910 () | 4258966..4259541 | + | 576 | WP_001188520.1 | transcriptional regulator | - |
| FDP43_RS20920 () | 4259906..4261177 | + | 1272 | WP_016240326.1 | Prophage integrase IntS ; Integrase | Integrase |
| FDP43_RS20925 () | 4261186..4261509 | + | 324 | WP_016240325.1 | hypothetical protein | - |
| FDP43_RS20930 () | 4261550..4263028 | - | 1479 | WP_139972919.1 | relaxase/mobilization nuclease domain-containing protein | - |
| FDP43_RS20935 () | 4263025..4263396 | - | 372 | WP_064168947.1 | plasmid mobilization relaxosome protein MobC | - |
| FDP43_RS20940 () | 4263383..4263643 | - | 261 | WP_063617446.1 | hypothetical protein | - |
| FDP43_RS20945 () | 4264186..4264893 | + | 708 | WP_130939267.1 | hypothetical protein | - |
| FDP43_RS20950 () | 4265843..4266046 | - | 204 | WP_016240318.1 | AlpA family transcriptional regulator | - |
| FDP43_RS20955 () | 4267029..4268567 | + | 1539 | WP_001187182.1 | lysine decarboxylation/transport transcriptional activator CadC | - |
| FDP43_RS20965 () | 4268933..4270267 | + | 1335 | WP_000092909.1 | cadaverine/lysine antiporter | - |
| FDP43_RS20970 () | 4270347..4272494 | + | 2148 | WP_001295383.1 | lysine decarboxylase CadA | - |
| FDP43_RS20975 () | 4272553..4274010 | + | 1458 | WP_000856841.1 | dipeptide/tripeptide permease DtpC | - |
| FDP43_RS20980 () | 4274247..4275764 | + | 1518 | WP_001295074.1 | lysine--tRNA ligase | - |
| FDP43_RS20985 () | 4275883..4276056 | - | 174 | WP_001173343.1 | type V toxin-antitoxin system toxin GhoT | Toxin Detail |
| FDP43_RS20990 () | 4276084..4276380 | - | 297 | WP_001425728.1 | type V toxin-antitoxin system endoribonuclease antitoxin GhoS | Antitoxin Detail |
| FDP43_RS20995 () | 4276607..4276879 | - | 273 | WP_000405647.1 | N-acetyltransferase | - |
| FDP43_RS21000 () | 4276891..4277121 | - | 231 | WP_000371700.1 | (4Fe-4S)-binding protein | - |
| FDP43_RS21005 () | 4277302..4278933 | + | 1632 | WP_001216487.1 | sensor histidine kinase | - |
| FDP43_RS21010 () | 4278930..4279649 | + | 720 | WP_000611288.1 | Transcriptional regulatory protein DcuR | VF |
| FDP43_RS21015 () | 4280220..4281560 | + | 1341 | WP_000899522.1 | anaerobic C4-dicarboxylate transporter DcuB | - |
| FDP43_RS21020 () | 4281638..4283284 | + | 1647 | WP_000066681.1 | class I fumarate hydratase | - |
| FDP43_RS21025 () | 4283407..4284036 | + | 630 | WP_000198733.1 | DUF2238 domain-containing protein | - |
| FDP43_RS21035 () | 4284175..4285596 | - | 1422 | Protein_4064 | melibiose:sodium transporter MelB | - |
| FDP43_RS21040 () | 4285699..4287054 | - | 1356 | WP_000988020.1 | alpha-galactosidase | - |
| FDP43_RS21045 () | 4287337..4288245 | + | 909 | WP_001090758.1 | transcriptional regulator MelR | - |
| FDP43_RS21050 () | 4288444..4290711 | + | 2268 | WP_001307519.1 | arginine decarboxylase | - |
| FDP43_RS21055 () | 4291036..4291797 | + | 762 | WP_001217059.1 | HTH-type transcriptional regulator GadX | VF |
| FDP43_RS21060 () | 4291934..4293271 | + | 1338 | WP_000093154.1 | arginine/agmatine antiporter | - |
| FDP43_RS21065 () | 4293375..4295018 | + | 1644 | WP_001298860.1 | Phosphoethanolamine transferase EptA | VF |
| FDP43_RS21070 () | 4295015..4295683 | + | 669 | WP_000697919.1 | Transcriptional regulatory protein BasR | VF |
| FDP43_RS21075 () | 4295684..4296784 | + | 1101 | WP_001051093.1 | two-component system sensor histidine kinase PmrB | - |
| FDP43_RS21080 () | 4296760..4296849 | - | 90 | WP_000797656.1 | LpxT activity modulator PmrR | - |
| FDP43_RS21085 () | 4296961..4298463 | - | 1503 | WP_001296882.1 | glycine betaine/L-proline transporter ProP | - |
| FDP43_RS21090 () | 4298727..4299605 | - | 879 | WP_000169198.1 | YjcZ-like family protein | - |
| FDP43_RS21095 () | 4299602..4301830 | - | 2229 | WP_000288597.1 | clamp-binding protein CrfC | - |
| FDP43_RS21100 () | 4302232..4302567 | + | 336 | WP_001375885.1 | phnA family protein | - |
| FDP43_RS21105 () | 4302727..4303170 | + | 444 | WP_001131322.1 | VOC family metalloprotein YjdN | - |
| FDP43_RS21110 () | 4303303..4304091 | + | 789 | WP_001193397.1 | Phosphate-import ATP-binding protein PhnC | VF |
| FDP43_RS21115 () | 4304116..4305132 | + | 1017 | WP_000991990.1 | phosphonate ABC transporter substrate-binding protein | - |
| FDP43_RS21120 () | 4305194..4305973 | + | 780 | WP_001375884.1 | phosphonate ABC transporter, permease protein PhnE | - |
| FDP43_RS21125 () | 4305994..4306719 | + | 726 | WP_001295387.1 | phosphonate metabolism transcriptional regulator PhnF | - |
| FDP43_RS21130 () | 4306720..4307172 | + | 453 | WP_000542768.1 | phosphonate C-P lyase system protein PhnG | - |
| FDP43_RS21135 () | 4307169..4307753 | + | 585 | WP_000171603.1 | phosphonate C-P lyase system protein PhnH | - |
| FDP43_RS21140 () | 4307753..4308817 | + | 1065 | WP_001325988.1 | alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnI | - |
| FDP43_RS21145 () | 4308810..4309655 | + | 846 | WP_000002283.1 | alpha-D-ribose 1-methylphosphonate 5-phosphate C-P-lyase PhnJ | - |
| FDP43_RS21150 () | 4309652..4310410 | + | 759 | WP_001075526.1 | Putative phosphonates utilization ATP-binding protein PhnK | VF |
| FDP43_RS21155 () | 4310587..4311267 | + | 681 | WP_000611419.1 | phosphonate C-P lyase system protein PhnL | - |
| FDP43_RS21160 () | 4311264..4312400 | + | 1137 | WP_001375886.1 | alpha-D-ribose 1-methylphosphonate 5-triphosphate diphosphatase | - |
| FDP43_RS21165 () | 4312400..4312957 | + | 558 | WP_000971891.1 | ribose 1,5-bisphosphokinase | - |
| FDP43_RS21170 () | 4312944..4313378 | + | 435 | WP_001110490.1 | aminoalkylphosphonate N-acetyltransferase | - |
| FDP43_RS21175 () | 4313380..4314138 | + | 759 | WP_000059928.1 | phosphonate metabolism protein PhnP | - |
| FDP43_RS21180 () | 4314285..4314614 | - | 330 | WP_000819746.1 | protein YjdP | - |
| FDP43_RS21185 () | 4314683..4315132 | - | 450 | WP_000716794.1 | bifunctional allose-6-phosphate isomerase/ribose-5-phosphate isomerase RpiB | - |
| FDP43_RS21190 () | 4315492..4316382 | + | 891 | WP_000083216.1 | als operon DNA-binding transcriptional repressor AlsR | - |
| FDP43_RS21195 () | 4316441..4317376 | + | 936 | WP_001046194.1 | D-allose transporter substrate-binding protein | - |
| FDP43_RS21200 () | 4317503..4319035 | + | 1533 | WP_000235260.1 | Ribose import ATP-binding protein RbsA | VF |
| FDP43_RS21205 () | 4319014..4319994 | + | 981 | WP_000507106.1 | D-allose ABC transporter permease | - |
| FDP43_RS21210 () | 4320005..4320700 | + | 696 | WP_001311314.1 | D-allulose-6-phosphate 3-epimerase | VF |
| FDP43_RS21215 () | 4320684..4321613 | + | 930 | WP_001171692.1 | allose kinase | - |
| FDP43_RS21220 () | 4321886..4323871 | + | 1986 | WP_089455100.1 | alkyl sulfatase YjcS | - |
| FDP43_RS21225 () | 4324080..4324355 | + | 276 | WP_001297587.1 | hypothetical protein | - |
| FDP43_RS21230 () | 4324374..4325405 | + | 1032 | WP_000446354.1 | Multidrug resistance protein MdtN | VF |
| FDP43_RS21235 () | 4325405..4327456 | + | 2052 | WP_001275144.1 | multidrug efflux transporter permease subunit MdtO | - |
| FDP43_RS21240 () | 4327453..4328919 | + | 1467 | WP_001375868.1 | multidrug efflux transporter outer membrane subunit MdtP | - |
| FDP43_RS21245 () | 4329117..4331264 | + | 2148 | WP_001300547.1 | formate dehydrogenase subunit alpha | - |
| FDP43_RS21250 () | 4331358..4332047 | + | 690 | WP_000719886.1 | sel1 repeat family protein | - |
| FDP43_RS21255 () | 4332125..4333438 | - | 1314 | WP_000835799.1 | glutamate/aspartate:proton symporter GltP | - |
| FDP43_RS21260 () | 4333780..4334376 | - | 597 | WP_000812889.1 | heme lyase NrfEFG subunit NrfG | - |
| FDP43_RS21265 () | 4334373..4334756 | - | 384 | WP_001032546.1 | heme lyase NrfEFG subunit NrfF | - |
| FDP43_RS21270 () | 4334749..4336467 | - | 1719 | WP_071606768.1 | Cytochrome c-type biogenesis protein CcmF | VF |
| FDP43_RS21275 () | 4336487..4337443 | - | 957 | WP_000195173.1 | cytochrome c nitrite reductase subunit NrfD | - |
| FDP43_RS21280 () | 4337440..4338111 | - | 672 | WP_000220281.1 | cytochrome c nitrite reductase Fe-S protein | - |
| FDP43_RS21285 () | 4338108..4338674 | - | 567 | WP_001295391.1 | cytochrome c nitrite reductase pentaheme subunit | - |
| FDP43_RS21290 () | 4338719..4340155 | - | 1437 | WP_000196875.1 | ammonia-forming nitrite reductase cytochrome c552 subunit | - |
| FDP43_RS21295 () | 4340547..4342505 | + | 1959 | WP_000078239.1 | acetate--CoA ligase | - |
| FDP43_RS21300 () | 4342706..4343020 | + | 315 | WP_001014565.1 | DUF485 domain-containing protein | - |
| FDP43_RS21305 () | 4343017..4344666 | + | 1650 | WP_000832572.1 | cation/acetate symporter ActP | - |
| FDP43_RS21310 () | 4344844..4346136 | + | 1293 | WP_001270133.1 | Secreted effector protein PipB2 | VF |
| FDP43_RS21315 () | 4346290..4347939 | - | 1650 | WP_000402207.1 | Na+/H+ antiporter | - |
| FDP43_RS21320 () | 4348090..4349439 | - | 1350 | WP_000106882.1 | guanine/hypoxanthine transporter GhxP | - |
| FDP43_RS21325 () | 4349985..4350449 | - | 465 | WP_000412428.1 | IS607 family transposase ISLhe9 | Transposase |
| FDP43_RS21330 () | 4350535..4350858 | + | 324 | WP_000019358.1 | Regulatory protein SoxS | VF |
| FDP43_RS21335 () | 4350861..4351580 | - | 720 | Protein_4124 | putative cyclic di-GMP phosphodiesterase PdeC | VF |
| FDP43_RS21340 () | 4351595..4352292 | - | 698 | Protein_4125 | IS1 family transposase | - |
| FDP43_RS21345 () | 4352348..4353223 | - | 876 | Protein_4126 | c-di-GMP phosphodiesterase PdeC | - |
| FDP43_RS21350 () | 4353653..4353934 | + | 282 | WP_001295689.1 | YjcB family protein | - |
| FDP43_RS21355 () | 4354033..4354569 | - | 537 | WP_000168305.1 | single-stranded DNA-binding protein SSB1 | - |
| FDP43_RS21360 () | 4354823..4357645 | + | 2823 | WP_000357740.1 | excinuclease ABC subunit UvrA | - |
| FDP43_RS21365 () | 4357680..4358036 | - | 357 | WP_000155657.1 | MmcQ/YjbR family DNA-binding protein | - |
| FDP43_RS21370 () | 4358040..4358456 | - | 417 | WP_000270372.1 | secondary thiamine-phosphate synthase enzyme YjbQ | - |
| FDP43_RS21375 () | 4358567..4359280 | - | 714 | WP_001307512.1 | acid phosphatase AphA | - |
| FDP43_RS26090 () | 4359682..4360185 | + | 504 | WP_001027717.1 | hypothetical protein | - |
| FDP43_RS21390 () | 4360407..4361600 | - | 1194 | WP_000486996.1 | aromatic amino acid transaminase | - |
| FDP43_RS21395 () | 4361853..4362932 | - | 1080 | WP_001147328.1 | alanine racemase | - |
| FDP43_RS21400 () | 4362985..4364400 | - | 1416 | WP_000918363.1 | replicative DNA helicase | - |
| FDP43_RS21405 () | 4364483..4365466 | + | 984 | WP_000235522.1 | Quinone oxidoreductase 1 | VF |
| FDP43_RS21410 () | 4365632..4365874 | - | 243 | WP_000891389.1 | envelope stress response protein PspG | - |
| FDP43_RS21415 () | 4366008..4367045 | - | 1038 | WP_000543841.1 | tRNA dihydrouridine(20/20a) synthase DusA | - |
| FDP43_RS21420 () | 4367134..4368231 | + | 1098 | WP_000332259.1 | hypothetical protein ; Integrase | Integrase |
| FDP43_RS21425 () | 4368292..4368540 | + | 249 | WP_001217553.1 | DinI-like family protein | - |
| FDP43_RS21430 () | 4368763..4369314 | + | 552 | WP_000543834.1 | SLATT domain-containing protein | - |
| FDP43_RS21435 () | 4369292..4370662 | + | 1371 | WP_001678535.1 | reverse transcriptase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|