MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 108848 bp
Accession: NZ_CP038887 Location: 1..108848 Organism: Piscirickettsia salmonis strain Psal-004 Replicon: plasmid unnamed1
Accession: NZ_CP038887 Location: 1..108848 Organism: Piscirickettsia salmonis strain Psal-004 Replicon: plasmid unnamed1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| Psal004_RS16240 () | 1..702 | + | 702 | WP_016212122.1 | ParA family protein | - |
| Psal004_RS16245 () | 656..1579 | + | 924 | WP_016212121.1 | ParB/RepB/Spo0J family partition protein | - |
| Psal004_RS16250 () | 1662..1969 | + | 308 | Protein_2 | IS6 family transposase ISPsa2 | Transposase |
| Psal004_RS16255 () | 2013..2378 | + | 366 | WP_032126205.1 | IS630 family transposase ISTer1 | Transposase |
| Psal004_RS16260 () | 2324..2824 | + | 501 | WP_129556705.1 | IS630 family transposase ISAcma25 | Transposase |
| Psal004_RS16265 () | 2883..3857 | + | 975 | WP_036771330.1 | IS30 family transposase ISPlu1 | Transposase |
| Psal004_RS16270 () | 4012..4292 | + | 281 | Protein_6 | IS6 family transposase ISPsa2 | Transposase |
| Psal004_RS16275 () | 4370..5452 | + | 1083 | WP_054300162.1 | IS481 family transposase ISFw3 | Transposase |
| Psal004_RS16280 () | 5488..5664 | + | 177 | Protein_8 | IS6 family transposase ISPsa2 | Transposase |
| Psal004_RS16285 () | 5817..6779 | - | 963 | WP_016212151.1 | tyrosine-type recombinase/integrase | - |
| Psal004_RS16290 () | 6803..7117 | - | 315 | WP_016212150.1 | hypothetical protein | - |
| Psal004_RS16295 () | 7174..8223 | - | 1050 | WP_033923686.1 | IS701 family transposase ISAeme11 | Transposase |
| Psal004_RS16300 () | 8332..9372 | - | 1041 | WP_016211885.1 | DNA-binding protein | - |
| Psal004_RS16305 () | 9386..10015 | - | 630 | WP_129556706.1 | hypothetical protein | - |
| Psal004_RS16310 () | 10106..10405 | - | 300 | WP_016211884.1 | nucleotidyltransferase domain-containing protein | - |
| Psal004_RS16315 () | 10402..10830 | - | 429 | WP_016211886.1 | nucleotidyltransferase substrate binding protein | - |
| Psal004_RS16320 () | 11619..12347 | - | 729 | WP_054300202.1 | IS6 family transposase ISPsa2 | Transposase |
| Psal004_RS16325 () | 12592..13500 | + | 909 | WP_032126832.1 | Chemotaxis protein CheV | VF |
| Psal004_RS16330 () | 13611..14339 | - | 729 | WP_054300202.1 | IS6 family transposase ISPsa2 | Transposase |
| Psal004_RS16335 () | 14451..14645 | - | 195 | WP_155046765.1 | hypothetical protein | - |
| Psal004_RS16340 () | 14569..15483 | + | 915 | Protein_20 | IS30 family transposase IS1655 | Transposase |
| Psal004_RS16345 () | 15532..16260 | + | 729 | WP_054300202.1 | IS6 family transposase ISPsa2 | Transposase |
| Psal004_RS16350 () | 16464..19040 | + | 2577 | WP_016211890.1 | hypothetical protein | - |
| Psal004_RS18245 () | 19187..19342 | + | 156 | WP_016211892.1 | hypothetical protein | - |
| Psal004_RS16360 () | 19446..20420 | + | 975 | WP_075274822.1 | IS30 family transposase ISPlu1 | Transposase |
| Psal004_RS16365 () | 20463..20597 | - | 135 | Protein_25 | IS3 family transposase | - |
| Psal004_RS16370 () | 20621..21349 | - | 729 | WP_075274931.1 | IS6 family transposase ISPsa2 | Transposase |
| Psal004_RS16375 () | 21419..21763 | + | 345 | Protein_27 | IS481 family transposase ISWpi2 | Transposase |
| Psal004_RS16380 () | 21793..22854 | - | 1062 | WP_016212137.1 | hypothetical protein | - |
| Psal004_RS16385 () | 22930..23175 | - | 246 | WP_016212139.1 | hypothetical protein | - |
| Psal004_RS16390 () | 23147..23761 | - | 615 | WP_051307371.1 | hypothetical protein | - |
| Psal004_RS16395 () | 23968..24486 | - | 519 | Protein_31 | IS6 family transposase ISPsa2 | Transposase |
| Psal004_RS16400 () | 24579..25553 | + | 975 | WP_075274955.1 | IS30 family transposase ISPlu1 | Transposase |
| Psal004_RS16405 () | 25584..25802 | - | 219 | Protein_33 | IS6 family transposase ISPsa2 | Transposase |
| Psal004_RS16410 () | 25913..26932 | - | 1020 | WP_129556707.1 | hypothetical protein | - |
| Psal004_RS16420 () | 28859..29131 | + | 273 | WP_032126239.1 | IS3 family transposase ISWsu1 | Transposase |
| Psal004_RS16425 () | 29143..29979 | + | 837 | WP_033923779.1 | IS3 family transposase IS1351 | Transposase |
| Psal004_RS16430 () | 30012..30743 | + | 732 | WP_075275144.1 | IS6 family transposase ISPsa2 | Transposase |
| Psal004_RS16435 () | 30841..31254 | + | 414 | WP_016212014.1 | DUF2190 family protein | - |
| Psal004_RS16440 () | 31549..31947 | + | 399 | WP_016212017.1 | hypothetical protein | - |
| Psal004_RS16445 () | 31977..32222 | + | 246 | WP_047927838.1 | hypothetical protein | - |
| Psal004_RS16450 () | 32219..32518 | + | 300 | WP_016212018.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| Psal004_RS16455 () | 32675..33370 | - | 696 | WP_016212019.1 | IS6 family transposase ISSba18 | Transposase |
| Psal004_RS16460 () | 33706..34083 | + | 378 | Protein_44 | IS6 family transposase ISPsa2 | Transposase |
| Psal004_RS16465 () | 34184..34963 | + | 780 | WP_081377351.1 | IS91 family transposase ISVa3 | Transposase |
| Psal004_RS16475 () | 35152..35484 | + | 333 | WP_032126739.1 | IS91 family transposase ISEc37 | Transposase |
| Psal004_RS16480 () | 35649..36026 | + | 378 | WP_016212154.1 | IS3 family transposase ISSde6 | Transposase |
| Psal004_RS16485 () | 36333..36716 | - | 384 | WP_016212152.1 | hypothetical protein | - |
| Psal004_RS16490 () | 37186..37914 | - | 729 | WP_054300202.1 | IS6 family transposase ISPsa2 | Transposase |
| Psal004_RS16495 () | 38000..38200 | + | 201 | WP_098082839.1 | hypothetical protein | - |
| Psal004_RS16500 () | 38368..38736 | + | 369 | WP_016211775.1 | HNH endonuclease | - |
| Psal004_RS16505 () | 38838..39512 | + | 675 | WP_016211773.1 | hypothetical protein | - |
| Psal004_RS16515 () | 39965..40330 | + | 366 | WP_032126362.1 | IS630 family transposase ISTer1 | Transposase |
| Psal004_RS16520 () | 40276..40851 | + | 576 | WP_075273327.1 | IS630 family transposase ISAcma25 | Transposase |
| Psal004_RS16525 () | 41058..41792 | + | 735 | WP_032126360.1 | hypothetical protein | - |
| Psal004_RS16530 () | 41915..42973 | - | 1059 | WP_016211895.1 | hypothetical protein | - |
| Psal004_RS16535 () | 43482..44228 | + | 747 | WP_016211894.1 | AAA family ATPase | - |
| Psal004_RS16540 () | 44229..44633 | + | 405 | WP_016211897.1 | hypothetical protein | - |
| Psal004_RS16545 () | 44727..44879 | - | 153 | Protein_59 | site-specific integrase | - |
| Psal004_RS16550 () | 45027..45842 | - | 816 | WP_081007042.1 | IS91 family transposase ISVsa9 | Transposase |
| Psal004_RS16555 () | 46447..47175 | - | 729 | WP_054300202.1 | IS6 family transposase ISPsa2 | Transposase |
| Psal004_RS16560 () | 47617..47943 | - | 327 | WP_016212298.1 | hypothetical protein | - |
| Psal004_RS16565 () | 48184..48660 | + | 477 | WP_051307374.1 | ATP-dependent Clp protease proteolytic subunit | VF |
| Psal004_RS16570 () | 48775..49068 | + | 294 | WP_075275158.1 | IS3 family transposase ISPca2 | Transposase |
| Psal004_RS16575 () | 49029..49709 | + | 681 | Protein_65 | IS3 family transposase ISMasp3 | Transposase |
| Psal004_RS16580 () | 49935..50216 | + | 282 | WP_155049205.1 | IS3 family transposase ISHor1 | Transposase |
| Psal004_RS16585 () | 50225..50926 | - | 702 | WP_129556698.1 | IS6 family transposase ISPsa2 | Transposase |
| Psal004_RS16590 () | 51016..51606 | - | 591 | WP_016211912.1 | site-specific integrase | - |
| Psal004_RS16595 () | 51879..52139 | + | 261 | WP_032126795.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin Detail |
| Psal004_RS16600 () | 52143..52415 | + | 273 | WP_016211910.1 | Txe/YoeB family addiction module toxin | Toxin Detail |
| Psal004_RS16605 () | 52741..53862 | - | 1122 | WP_016211913.1 | hypothetical protein | - |
| Psal004_RS16610 () | 54295..54693 | + | 399 | WP_075273786.1 | IS30 family transposase ISMae39 | Transposase |
| Psal004_RS16615 () | 54702..55259 | - | 558 | WP_081377915.1 | IS3 family transposase ISMasp3 | Transposase |
| Psal004_RS16620 () | 55404..55733 | - | 330 | WP_081377914.1 | IS3 family transposase ISLbl1 | Transposase |
| Psal004_RS16625 () | 55850..56143 | - | 294 | WP_032126637.1 | IS3 family transposase ISPca2 | Transposase |
| Psal004_RS16630 () | 56203..56805 | + | 603 | Protein_76 | IS30 family transposase IS4351 | Transposase |
| Psal004_RS16635 () | 57142..57516 | + | 375 | WP_016212499.1 | hypothetical protein | - |
| Psal004_RS16640 () | 57524..57718 | + | 195 | Protein_78 | IS6 family transposase ISPsa2 | Transposase |
| Psal004_RS16645 () | 57721..57894 | - | 174 | WP_016212410.1 | IS3 family transposase IS1302 | Transposase |
| Psal004_RS16650 () | 58142..58591 | + | 450 | WP_016212408.1 | hypothetical protein | - |
| Psal004_RS16655 () | 58584..58748 | + | 165 | WP_016212412.1 | hypothetical protein | - |
| Psal004_RS18250 () | 58953..59087 | + | 135 | Protein_82 | IS982 family transposase | - |
| Psal004_RS16665 () | 59781..60509 | - | 729 | WP_054300202.1 | IS6 family transposase ISPsa2 | Transposase |
| Psal004_RS16670 () | 60539..60763 | - | 225 | WP_054300590.1 | hypothetical protein | - |
| Psal004_RS16675 () | 61071..61271 | + | 201 | WP_129556699.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | - |
| Psal004_RS16680 () | 61265..61600 | + | 336 | WP_016211871.1 | type II toxin-antitoxin system PemK/MazF family toxin | - |
| Psal004_RS16685 () | 62166..62429 | + | 264 | WP_032126138.1 | RNA-binding protein | - |
| Psal004_RS16690 () | 62984..63787 | + | 804 | WP_016211872.1 | hypothetical protein | - |
| Psal004_RS16695 () | 63908..64432 | + | 525 | WP_051307367.1 | hypothetical protein | - |
| Psal004_RS16705 () | 64857..65099 | - | 243 | WP_032126346.1 | hypothetical protein | - |
| Psal004_RS16710 () | 65166..65906 | - | 741 | WP_033923775.1 | Dihydroanticapsin 7-dehydrogenase | VF |
| Psal004_RS16715 () | 65954..66382 | - | 429 | WP_016212413.1 | hypothetical protein | - |
| Psal004_RS16720 () | 66487..66669 | + | 183 | WP_075273800.1 | IS701 family transposase ISAeme11 | Transposase |
| Psal004_RS16725 () | 66716..67444 | + | 729 | WP_017377694.1 | IS6 family transposase ISPsa2 | Transposase |
| Psal004_RS16730 () | 67648..67866 | + | 219 | WP_164997253.1 | IS5 family transposase ISFtu2 | Transposase |
| Psal004_RS16735 () | 67826..68281 | + | 456 | WP_081007004.1 | IS5 family transposase ISRel13 | Transposase |
| Psal004_RS16740 () | 68387..69448 | + | 1062 | WP_054300148.1 | IS701 family transposase ISAeme11 | Transposase |
| Psal004_RS16745 () | 69488..69952 | - | 465 | WP_016212476.1 | helix-turn-helix domain-containing protein | - |
| Psal004_RS16750 () | 70306..70638 | - | 333 | WP_032126739.1 | IS91 family transposase ISEc37 | Transposase |
| Psal004_RS16755 () | 70885..71409 | - | 525 | WP_129556701.1 | IS91 family transposase ISVsa9 | Transposase |
| Psal004_RS16760 () | 71818..72525 | + | 708 | WP_075275159.1 | hypothetical protein | - |
| Psal004_RS16765 () | 72546..73699 | + | 1154 | WP_129556702.1 | IS3 family transposase ISMasp3 | Transposase |
| Psal004_RS16770 () | 73731..74147 | + | 417 | Protein_103 | IS6 family transposase ISPsa2 | Transposase |
| Psal004_RS16775 () | 74163..74699 | - | 537 | Protein_104 | IS481 family transposase ISWpi2 | Transposase |
| Psal004_RS16780 () | 74683..75258 | - | 576 | WP_075273327.1 | IS630 family transposase ISAcma25 | Transposase |
| Psal004_RS16785 () | 75204..75569 | - | 366 | WP_032126362.1 | IS630 family transposase ISTer1 | Transposase |
| Psal004_RS16790 () | 75635..76180 | - | 546 | Protein_107 | IS481 family transposase ISRpe1 | Transposase |
| Psal004_RS16795 () | 76290..76367 | + | 78 | Protein_108 | IS6 family transposase | - |
| Psal004_RS18255 () | 76370..76750 | - | 381 | WP_155047268.1 | IS3 family transposase IS1302 | Transposase |
| Psal004_RS16805 () | 76917..77378 | - | 462 | WP_016212398.1 | hypothetical protein | - |
| Psal004_RS16810 () | 77641..78477 | + | 837 | WP_075273816.1 | IS30 family transposase ISPlu1 | Transposase |
| Psal004_RS16815 () | 78803..80029 | + | 1227 | WP_129556717.1 | hypothetical protein | - |
| Psal004_RS16820 () | 80120..80647 | + | 528 | Protein_113 | IS6 family transposase ISPsa2 | Transposase |
| Psal004_RS16825 () | 80684..81658 | - | 975 | WP_075274955.1 | IS30 family transposase ISPlu1 | Transposase |
| Psal004_RS16830 () | 81816..82088 | + | 273 | WP_016212260.1 | hypothetical protein | - |
| Psal004_RS16835 () | 82108..82332 | + | 225 | WP_016212257.1 | hypothetical protein | - |
| Psal004_RS16840 () | 82669..82872 | + | 204 | WP_032126838.1 | hypothetical protein | - |
| Psal004_RS16845 () | 82869..83039 | + | 171 | WP_016212255.1 | hypothetical protein | - |
| Psal004_RS16850 () | 83226..84308 | - | 1083 | WP_075273820.1 | IS481 family transposase ISFw3 | Transposase |
| Psal004_RS16855 () | 84465..84965 | + | 501 | WP_075273822.1 | IS91 family transposase ISVsa9 | Transposase |
| Psal004_RS16860 () | 85067..85324 | - | 258 | WP_075274741.1 | hypothetical protein | - |
| Psal004_RS16870 () | 86607..87632 | - | 1026 | Protein_123 | IS3 family transposase ISPca2 | Transposase |
| Psal004_RS16875 () | 87853..87999 | + | 147 | WP_155047013.1 | hypothetical protein | - |
| Psal004_RS16880 () | 88329..89144 | + | 816 | WP_081377350.1 | IS91 family transposase ISVsa9 | Transposase |
| Psal004_RS16885 () | 89390..89980 | + | 591 | WP_059372616.1 | site-specific integrase | - |
| Psal004_RS16890 () | 90946..91965 | + | 1020 | WP_016211879.1 | ParA family protein | - |
| Psal004_RS16895 () | 91978..93318 | + | 1341 | WP_016211878.1 | hypothetical protein | - |
| Psal004_RS16900 () | 93615..93782 | - | 168 | WP_155046770.1 | IS3 family transposase ISXau3 | Transposase |
| Psal004_RS16905 () | 93838..94566 | + | 729 | WP_054300202.1 | IS6 family transposase ISPsa2 | Transposase |
| Psal004_RS16910 () | 94535..96223 | - | 1689 | WP_016212168.1 | hypothetical protein | - |
| Psal004_RS16915 () | 96567..97541 | + | 975 | WP_075275149.1 | IS30 family transposase ISPlu1 | Transposase |
| Psal004_RS16920 () | 97767..98255 | + | 489 | WP_129556703.1 | hypothetical protein | VF |
| Psal004_RS16925 () | 98313..99041 | + | 729 | WP_016211956.1 | hypothetical protein | - |
| Psal004_RS18260 () | 99114..99278 | + | 165 | WP_196213966.1 | hypothetical protein | - |
| Psal004_RS16930 () | 99498..100478 | + | 981 | WP_016211955.1 | hypothetical protein | - |
| Psal004_RS16935 () | 100624..101352 | - | 729 | WP_054300202.1 | IS6 family transposase ISPsa2 | Transposase |
| Psal004_RS16940 () | 101656..101835 | + | 180 | WP_032126843.1 | hypothetical protein | - |
| Psal004_RS16945 () | 102054..102350 | + | 297 | WP_032126844.1 | hypothetical protein | - |
| Psal004_RS16950 () | 102445..102906 | + | 462 | WP_016212118.1 | hypothetical protein | - |
| Psal004_RS16955 () | 103262..103672 | - | 411 | Protein_141 | IS6 family transposase ISPsa2 | Transposase |
| Psal004_RS16960 () | 103825..104799 | - | 975 | WP_075274955.1 | IS30 family transposase ISPlu1 | Transposase |
| Psal004_RS16965 () | 104891..105169 | - | 279 | Protein_143 | IS6 family transposase ISPsa2 | Transposase |
| Psal004_RS16970 () | 105249..106099 | + | 851 | Protein_144 | IS630 family transposase | - |
| Psal004_RS16975 () | 106175..107149 | + | 975 | WP_075274955.1 | IS30 family transposase ISPlu1 | Transposase |
| Psal004_RS16980 () | 107185..107640 | + | 456 | Protein_146 | IS6 family transposase ISPsa2 | Transposase |
| Psal004_RS16985 () | 107643..107927 | - | 285 | WP_196213967.1 | IS3 family transposase IS1302 | Transposase |
| Psal004_RS16990 () | 108200..108651 | - | 452 | Protein_148 | IS6 family transposase ISPsa2 | Transposase |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|