MGE detailed information
MGE type: Conjugative plasmid MGE length: 83042 bp
Accession: NZ_CP035839 Location: 1..83042 Organism: Escherichia coli strain WS1933D Replicon: plasmid pWS1933D_83
Accession: NZ_CP035839 Location: 1..83042 Organism: Escherichia coli strain WS1933D Replicon: plasmid pWS1933D_83
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EXA03_RS25595 (614) | 614..1827 | + | 1214 | WP_139371347.1 | IS3 family transposase IS629 | Transposase |
| EXA03_RS25600 (2408) | 2408..3103 | + | 696 | WP_072147603.1 | DNA-binding protein | - |
| EXA03_RS25605 (3100) | 3100..3720 | + | 621 | WP_001307044.1 | hypothetical protein | - |
| EXA03_RS26745 (3717) | 3717..3908 | + | 192 | Protein_4 | hypothetical protein | - |
| EXA03_RS25610 (3924) | 3924..4505 | + | 582 | WP_235837045.1 | DUF2971 domain-containing protein | - |
| EXA03_RS25615 (4541) | 4541..5281 | + | 741 | WP_000933099.1 | abortive infection family protein | - |
| EXA03_RS25620 (5440) | 5440..6412 | - | 973 | Protein_7 | hypothetical protein | - |
| EXA03_RS25625 (7168) | 7168..8145 | + | 978 | WP_000361612.1 | RepB family plasmid replication initiator protein | - |
| EXA03_RS25630 (8424) | 8424..9164 | - | 741 | WP_001066941.1 | tyrosine-type recombinase/integrase | - |
| EXA03_RS25635 (9285) | 9285..9413 | - | 129 | Protein_10 | serine/threonine protein kinase | - |
| EXA03_RS25640 (10357) | 10357..10662 | + | 306 | WP_000336590.1 | Major pilu subunit operon regulatory protein PapB | VF |
| EXA03_RS25645 (10914) | 10914..11810 | + | 897 | WP_000017442.1 | transcriptional regulator HilD | - |
| EXA03_RS25650 (11824) | 11824..12267 | + | 444 | WP_001220546.1 | hypothetical protein | VF |
| EXA03_RS25655 (12566) | 12566..13276 | + | 711 | WP_000954086.1 | Toxin coregulated pilin | VF |
| EXA03_RS25660 (13338) | 13338..14909 | + | 1572 | WP_000783967.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | - |
| EXA03_RS25665 (14928) | 14928..15341 | + | 414 | WP_001201934.1 | TcpQ domain-containing protein | - |
| EXA03_RS25670 (15359) | 15359..16816 | + | 1458 | WP_000768354.1 | hypothetical protein | - |
| EXA03_RS25675 (16819) | 16819..17379 | + | 561 | WP_001047585.1 | type IV pilus Longus assembly protein LngE | - |
| EXA03_RS25680 (17381) | 17381..18208 | + | 828 | WP_001054274.1 | hypothetical protein | - |
| EXA03_RS25685 (18196) | 18196..18681 | + | 486 | WP_000336151.1 | type IV pilus Longus-associated protein LngG | - |
| EXA03_RS25690 (18879) | 18879..20213 | + | 1335 | WP_001380305.1 | Toxin coregulated pilus biosynthesis protein T | VF |
| EXA03_RS25695 (20197) | 20197..21222 | + | 1026 | WP_000714367.1 | Toxin coregulated pilus biosynthesis protein E | VF |
| EXA03_RS25700 (21237) | 21237..22358 | + | 1122 | WP_000857355.1 | hypothetical protein | - |
| EXA03_RS25705 (22361) | 22361..23215 | + | 855 | WP_000289148.1 | Type 4 prepilin-like proteins leader peptide-processing enzyme | VF |
| EXA03_RS25710 (23432) | 23432..24004 | - | 573 | WP_000723074.1 | hypothetical protein | - |
| EXA03_RS25715 (24330) | 24330..24740 | - | 411 | Protein_26 | Tn3 family transposase ISEc63 | Transposase |
| EXA03_RS25720 (24933) | 24933..25151 | + | 219 | WP_077628640.1 | hypothetical protein | - |
| EXA03_RS25725 (25151) | 25151..25735 | + | 585 | WP_000194583.1 | hypothetical protein | - |
| EXA03_RS25730 (26000) | 26000..27556 | + | 1557 | WP_000818361.1 | AAA family ATPase | - |
| EXA03_RS25735 (27751) | 27751..28368 | + | 618 | WP_000521602.1 | ProQ/FINO family protein | - |
| EXA03_RS26750 (28427) | 28427..29218 | - | 792 | WP_000202509.1 | hypothetical protein | - |
| EXA03_RS25750 (29229) | 29229..30457 | + | 1229 | WP_085959875.1 | IS3 family transposase IS2 | Transposase |
| EXA03_RS25755 (31433) | 31433..32290 | - | 858 | WP_000131013.1 | incFII family plasmid replication initiator RepA | - |
| EXA03_RS26755 (32309) | 32309..32488 | - | 180 | Protein_34 | protein CopA/IncA | - |
| EXA03_RS25765 (32591) | 32591..32848 | - | 258 | WP_000083834.1 | replication regulatory protein RepA | - |
| EXA03_RS25770 (33088) | 33088..33678 | - | 591 | WP_000766798.1 | DUF2726 domain-containing protein | - |
| EXA03_RS25775 (33716) | 33716..33925 | - | 210 | WP_001302200.1 | hemolysin expression modulator Hha | - |
| EXA03_RS25780 (33971) | 33971..34252 | - | 282 | Protein_38 | thermonuclease family protein | - |
| EXA03_RS25785 (34306) | 34306..34983 | + | 678 | WP_001339397.1 | IS66 family transposase ISCro1 | Transposase |
| EXA03_RS25790 (34983) | 34983..35330 | + | 348 | WP_000624622.1 | IS66 family transposase ISCro1 | Transposase |
| EXA03_RS25795 (35350) | 35350..36921 | + | 1572 | WP_001748001.1 | IS66 family transposase ISCro1 | Transposase |
| EXA03_RS25800 (36953) | 36953..38986 | + | 2034 | Protein_42 | type IV conjugative transfer system coupling protein TraD | - |
| EXA03_RS25805 (38995) | 38995..39393 | - | 399 | WP_000911313.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| EXA03_RS25810 (39393) | 39393..39620 | - | 228 | WP_000450520.1 | toxin-antitoxin system antitoxin VapB | Antitoxin Detail |
| EXA03_RS25815 (39702) | 39702..44972 | + | 5271 | WP_216331349.1 | Multifunctional conjugation protein TraI | Relaxase |
| EXA03_RS25820 (44992) | 44992..45738 | + | 747 | WP_216331347.1 | conjugal transfer pilus acetylase TraX | - |
| EXA03_RS25825 (45797) | 45797..46657 | + | 861 | WP_000704515.1 | alpha/beta hydrolase | - |
| EXA03_RS25830 (46760) | 46760..47320 | + | 561 | WP_000840466.1 | fertility inhibition protein FinO | - |
| EXA03_RS25835 (47453) | 47453..47665 | + | 213 | WP_001490517.1 | ANR family transcriptional regulator | - |
| EXA03_RS25840 (47910) | 47910..48098 | + | 189 | Protein_50 | endonuclease | - |
| EXA03_RS25845 (48128) | 48128..49699 | - | 1572 | WP_001748001.1 | IS66 family transposase ISCro1 | Transposase |
| EXA03_RS25850 (49719) | 49719..50066 | - | 348 | WP_000624622.1 | IS66 family transposase ISCro1 | Transposase |
| EXA03_RS25855 (50066) | 50066..50743 | - | 678 | WP_001339397.1 | IS66 family transposase ISCro1 | Transposase |
| EXA03_RS25860 (50798) | 50798..50923 | - | 126 | Protein_54 | conjugal transfer protein TraD | - |
| EXA03_RS25865 (51176) | 51176..51886 | - | 711 | WP_042032882.1 | conjugal transfer complement resistance protein TraT | - |
| EXA03_RS25870 (51921) | 51921..52430 | - | 510 | WP_000628096.1 | conjugal transfer entry exclusion protein TraS | - |
| EXA03_RS25875 (52427) | 52427..55252 | - | 2826 | WP_001007019.1 | conjugal transfer mating-pair stabilization protein TraG | - |
| EXA03_RS25880 (55249) | 55249..56622 | - | 1374 | WP_000944320.1 | conjugal transfer pilus assembly protein TraH | - |
| EXA03_RS26760 (56609) | 56609..57001 | - | 393 | Protein_59 | F-type conjugal transfer protein TrbF | - |
| EXA03_RS25885 (56988) | 56988..57329 | - | 342 | WP_001442101.1 | P-type conjugative transfer protein TrbJ | - |
| EXA03_RS25890 (57259) | 57259..57537 | - | 279 | Protein_61 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| EXA03_RS25895 (57531) | 57531..58490 | - | 960 | WP_000830182.1 | conjugal transfer pilus assembly protein TraU | - |
| EXA03_RS25900 (58487) | 58487..59119 | - | 633 | WP_001203720.1 | type-F conjugative transfer system protein TraW | - |
| EXA03_RS25905 (59116) | 59116..59502 | - | 387 | WP_000099690.1 | type-F conjugative transfer system protein TrbI | - |
| EXA03_RS25910 (59499) | 59499..60428 | - | 930 | Protein_65 | hypothetical protein | - |
| EXA03_RS25915 (60605) | 60605..61333 | - | 729 | WP_001230787.1 | type-F conjugative transfer system secretin TraK | - |
| EXA03_RS25920 (61320) | 61320..61886 | - | 567 | WP_000399792.1 | type IV conjugative transfer system protein TraE | - |
| EXA03_RS25925 (61908) | 61908..62219 | - | 312 | WP_000012106.1 | type IV conjugative transfer system protein TraL | - |
| EXA03_RS25930 (62234) | 62234..62599 | - | 366 | WP_000340270.1 | type IV conjugative transfer system pilin TraA | - |
| EXA03_RS25935 (62633) | 62633..62860 | - | 228 | WP_016255765.1 | conjugal transfer relaxosome protein TraY | - |
| EXA03_RS25940 (62980) | 62980..63627 | - | 648 | WP_000332529.1 | transcriptional regulator TraJ family protein | - |
| EXA03_RS25945 (63819) | 63819..64202 | - | 384 | WP_001151530.1 | conjugal transfer relaxosome DNA-binding protein TraM | - |
| EXA03_RS25950 (64478) | 64478..65125 | + | 648 | WP_000601036.1 | hypothetical protein | VF |
| EXA03_RS25955 (65458) | 65458..66243 | - | 786 | WP_159379700.1 | DUF932 domain-containing protein | - |
| EXA03_RS25960 (66355) | 66355..66651 | - | 297 | WP_001272251.1 | hypothetical protein | - |
| EXA03_RS25965 (66948) | 66948..67203 | + | 256 | Protein_76 | hypothetical protein | - |
| EXA03_RS25970 (67256) | 67256..67603 | - | 348 | Protein_77 | IS66 family transposase ISCro1 | Transposase |
| EXA03_RS25975 (67635) | 67635..69206 | - | 1572 | WP_000381449.1 | IS66 family transposase IS679 | Transposase |
| EXA03_RS25980 (69226) | 69226..69573 | - | 348 | WP_000624622.1 | IS66 family transposase ISCro1 | Transposase |
| EXA03_RS25985 (69573) | 69573..70223 | - | 651 | WP_000993921.1 | IS66 family transposase IS679 | Transposase |
| EXA03_RS25990 (70589) | 70589..70708 | - | 120 | WP_229484968.1 | Hok/Gef family protein | - |
| EXA03_RS26765 (70656) | 70656..70769 | - | 114 | Protein_82 | DUF5431 family protein | - |
| - (70803) | 70803..71002 | - | 200 | NuclAT_0 | - | - |
| - (70803) | 70803..71002 | - | 200 | NuclAT_0 | - | - |
| - (70803) | 70803..71002 | - | 200 | NuclAT_0 | - | - |
| - (70803) | 70803..71002 | - | 200 | NuclAT_0 | - | - |
| EXA03_RS25995 (70959) | 70959..71273 | - | 315 | WP_000872086.1 | hypothetical protein | - |
| EXA03_RS26000 (71270) | 71270..71989 | - | 720 | WP_001379993.1 | plasmid SOS inhibition protein A | - |
| EXA03_RS26005 (71986) | 71986..72420 | - | 435 | WP_000845954.1 | conjugation system SOS inhibitor PsiB | - |
| EXA03_RS26010 (72475) | 72475..74436 | - | 1962 | WP_032187061.1 | ParB/RepB/Spo0J family partition protein | - |
| EXA03_RS26015 (74474) | 74474..75687 | + | 1214 | WP_139371347.1 | IS3 family transposase IS629 | Transposase |
| EXA03_RS26020 (75729) | 75729..76097 | + | 369 | Protein_88 | DUF4113 domain-containing protein | - |
| EXA03_RS26025 (76102) | 76102..76494 | - | 393 | WP_000340829.1 | plasmid partitioning/stability family protein | - |
| EXA03_RS26030 (76499) | 76499..77470 | - | 972 | WP_001103691.1 | plasmid segregation protein ParM | - |
| EXA03_RS26035 (77699) | 77699..78343 | + | 645 | WP_000633913.1 | division plane positioning ATPase MipZ | - |
| EXA03_RS26040 (78337) | 78337..78612 | + | 276 | WP_000239529.1 | hypothetical protein | - |
| EXA03_RS26045 (78750) | 78750..79541 | - | 792 | WP_000016495.1 | site-specific integrase | - |
| EXA03_RS26050 (79538) | 79538..80227 | - | 690 | WP_000796232.1 | hypothetical protein | - |
| EXA03_RS26055 (80220) | 80220..80489 | - | 270 | WP_001168933.1 | hypothetical protein | - |
| EXA03_RS26060 (81273) | 81273..82268 | + | 996 | WP_000246636.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|