MGE detailed information
MGE type: Prophage MGE length: 128457 bp
Accession: NZ_CP035832 Location: 1041663..1170119 Organism: Escherichia coli strain 025542-1 Replicon: chromosome
Accession: NZ_CP035832 Location: 1041663..1170119 Organism: Escherichia coli strain 025542-1 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EXA04_RS05065 (1036975) | 1036975..1039134 | + | 2160 | WP_000899069.1 | bifunctional acyl-ACP--phospholipid O-acyltransferase/long-chain-fatty-acid--ACP ligase | - |
| EXA04_RS05070 (1039127) | 1039127..1040320 | + | 1194 | WP_000004616.1 | lysophospholipid transporter LplT | - |
| EXA04_RS05075 (1040352) | 1040352..1041392 | - | 1041 | WP_001199295.1 | NADP(H)-dependent aldo-keto reductase | - |
| EXA04_RS05080 (1041500) | 1041500..1041655 | - | 156 | Protein_997 | lipoprotein YgdR | - |
| EXA04_RS05090 (1042983) | 1042983..1043054 | - | 72 | Protein_999 | lipoprotein YgdR | - |
| EXA04_RS05095 (1043192) | 1043192..1043905 | - | 714 | WP_000895624.1 | TerC family protein | - |
| EXA04_RS05100 (1043973) | 1043973..1044662 | - | 690 | WP_000082188.1 | DNA mismatch repair endonuclease MutH | - |
| EXA04_RS05105 (1045347) | 1045347..1045877 | + | 531 | WP_000564489.1 | RNA pyrophosphohydrolase | - |
| EXA04_RS05110 (1045890) | 1045890..1048136 | + | 2247 | WP_000957914.1 | phosphoenolpyruvate--protein phosphotransferase | - |
| EXA04_RS05115 (1048287) | 1048287..1049162 | + | 876 | WP_000204658.1 | prolipoprotein diacylglyceryl transferase | - |
| EXA04_RS05120 (1049169) | 1049169..1049963 | + | 795 | WP_000816232.1 | thymidylate synthase | - |
| EXA04_RS05125 (1050148) | 1050148..1050618 | + | 471 | WP_000857051.1 | prepilin peptidase-dependent protein | - |
| EXA04_RS05130 (1050609) | 1050609..1051172 | + | 564 | WP_001144331.1 | prepilin peptidase-dependent protein | - |
| EXA04_RS05135 (1051169) | 1051169..1051576 | + | 408 | WP_001078393.1 | DUF2509 family protein | - |
| EXA04_RS05140 (1051561) | 1051561..1051884 | + | 324 | WP_001276478.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | - |
| EXA04_RS05145 (1051897) | 1051897..1055265 | + | 3369 | WP_001696797.1 | exodeoxyribonuclease V subunit gamma | - |
| EXA04_RS05150 (1055441) | 1055441..1058329 | + | 2889 | WP_001760241.1 | pitrilysin | - |
| EXA04_RS05155 (1058322) | 1058322..1061864 | + | 3543 | WP_001285999.1 | exodeoxyribonuclease V subunit beta | - |
| EXA04_RS05160 (1061864) | 1061864..1063690 | + | 1827 | WP_000775946.1 | exodeoxyribonuclease V subunit alpha | - |
| EXA04_RS05165 (1063752) | 1063752..1065083 | - | 1332 | WP_000237947.1 | amino-acid N-acetyltransferase | - |
| EXA04_RS05170 (1065315) | 1065315..1066568 | + | 1254 | WP_000016907.1 | N-acetylmuramoyl-L-alanine amidase AmiC | - |
| EXA04_RS05175 (1066914) | 1066914..1067462 | - | 549 | WP_000276890.1 | MucR family transcriptional regulator | - |
| EXA04_RS05180 (1067527) | 1067527..1068903 | - | 1377 | WP_000157827.1 | VasL domain-containing protein | - |
| EXA04_RS05185 (1068903) | 1068903..1069331 | - | 429 | WP_000106970.1 | hypothetical protein | VF |
| EXA04_RS05190 (1069335) | 1069335..1069871 | - | 537 | WP_000484008.1 | hypothetical protein | VF |
| EXA04_RS05195 (1069852) | 1069852..1070931 | - | 1080 | WP_000373311.1 | hypothetical protein | VF |
| EXA04_RS05200 (1070895) | 1070895..1072655 | - | 1761 | WP_000342493.1 | hypothetical protein | VF |
| EXA04_RS05205 (1073215) | 1073215..1073637 | - | 423 | WP_000199055.1 | hypothetical protein | - |
| EXA04_RS26275 (1073630) | 1073630..1074568 | - | 939 | Protein_1023 | hypothetical protein | - |
| EXA04_RS05220 (1074578) | 1074578..1075066 | - | 489 | Protein_1024 | IS3 family transposase ISCfr6 | Transposase |
| EXA04_RS05225 (1075147) | 1075147..1076655 | - | 1509 | WP_001189123.1 | group II intron reverse transcriptase/maturase | - |
| EXA04_RS05230 (1077328) | 1077328..1078061 | - | 734 | Protein_1026 | IS3 family transposase | - |
| EXA04_RS05235 (1078098) | 1078098..1078694 | - | 597 | Protein_1027 | hypothetical protein | VF |
| EXA04_RS05240 (1078753) | 1078753..1079253 | - | 501 | WP_001297760.1 | hypothetical protein | VF |
| EXA04_RS05260 (1080391) | 1080391..1081488 | + | 1098 | WP_000678649.1 | murein transglycosylase A | - |
| EXA04_RS05265 (1081565) | 1081565..1082371 | + | 807 | WP_000117728.1 | tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA | - |
| EXA04_RS05270 (1082422) | 1082422..1082865 | - | 444 | WP_000184247.1 | cysteine desulfurase sulfur acceptor subunit CsdE | - |
| EXA04_RS05275 (1082865) | 1082865..1084070 | - | 1206 | WP_001356116.1 | cysteine desulfurase CsdA | - |
| EXA04_RS05280 (1084262) | 1084262..1084489 | + | 228 | WP_000750398.1 | YgdI/YgdR family lipoprotein | - |
| EXA04_RS05285 (1084840) | 1084840..1085757 | + | 918 | WP_000044401.1 | glycine cleavage system transcriptional regulator GcvA | - |
| EXA04_RS05290 (1085776) | 1085776..1086171 | + | 396 | WP_000203905.1 | DUF423 domain-containing protein | - |
| EXA04_RS05295 (1086164) | 1086164..1087264 | + | 1101 | WP_001045520.1 | 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM | - |
| EXA04_RS05300 (1087308) | 1087308..1088039 | - | 732 | WP_000642344.1 | L-fucose operon activator | - |
| EXA04_RS05305 (1088097) | 1088097..1088519 | - | 423 | WP_000920840.1 | L-fucose mutarotase | - |
| EXA04_RS05310 (1088521) | 1088521..1089939 | - | 1419 | WP_000808376.1 | L-fuculokinase | - |
| EXA04_RS05315 (1090048) | 1090048..1091823 | - | 1776 | WP_000724150.1 | L-fucose isomerase | - |
| EXA04_RS05320 (1091856) | 1091856..1093172 | - | 1317 | WP_000528603.1 | hypothetical protein | VF |
| EXA04_RS05325 (1093719) | 1093719..1094366 | + | 648 | WP_000440782.1 | L-fuculose-phosphate aldolase | - |
| EXA04_RS05330 (1094394) | 1094394..1095542 | + | 1149 | WP_000013588.1 | hypothetical protein | VF |
| EXA04_RS05335 (1095597) | 1095597..1096352 | - | 756 | WP_001696778.1 | flap endonuclease Xni | - |
| EXA04_RS05340 (1096464) | 1096464..1097831 | - | 1368 | WP_000626410.1 | L-serine ammonia-lyase II | - |
| EXA04_RS05345 (1097889) | 1097889..1099178 | - | 1290 | WP_000450476.1 | HAAAP family serine/threonine permease SdaC | - |
| EXA04_RS05350 (1099735) | 1099735..1101099 | - | 1365 | WP_000627995.1 | nucleotide 5'-monophosphate nucleosidase PpnN | - |
| EXA04_RS05355 (1101211) | 1101211..1102059 | - | 849 | WP_000100430.1 | NADPH-dependent 7-cyano-7-deazaguanine reductase QueF | - |
| EXA04_RS05360 (1102127) | 1102127..1102672 | + | 546 | WP_000342431.1 | SecY-interacting protein | - |
| EXA04_RS05365 (1103294) | 1103294..1103623 | + | 330 | WP_000206990.1 | YqcC family protein | - |
| EXA04_RS05370 (1103623) | 1103623..1104405 | + | 783 | WP_000890008.1 | tRNA pseudouridine(65) synthase TruC | - |
| EXA04_RS05375 (1104423) | 1104423..1104872 | + | 450 | WP_000807750.1 | flavodoxin | - |
| EXA04_RS05380 (1105307) | 1105307..1106659 | + | 1353 | WP_216317241.1 | MFS transporter | - |
| EXA04_RS05385 (1106661) | 1106661..1108001 | + | 1341 | WP_000211758.1 | enolase C-terminal domain-like protein | - |
| EXA04_RS05390 (1108022) | 1108022..1109362 | + | 1341 | WP_000098237.1 | glucarate dehydratase | - |
| EXA04_RS05395 (1109594) | 1109594..1112350 | - | 2757 | WP_000186450.1 | two-component sensor histidine kinase BarA | - |
| EXA04_RS05400 (1112407) | 1112407..1113708 | + | 1302 | WP_000046790.1 | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | - |
| EXA04_RS05405 (1113756) | 1113756..1115990 | + | 2235 | WP_000226815.1 | hypothetical protein | VF |
| EXA04_RS05410 (1116068) | 1116068..1116316 | + | 249 | WP_000581937.1 | type II toxin-antitoxin system antitoxin MazE | Antitoxin Detail |
| EXA04_RS05415 (1116316) | 1116316..1116651 | + | 336 | WP_000254745.1 | endoribonuclease MazF | Toxin Detail |
| EXA04_RS05420 (1116722) | 1116722..1117513 | + | 792 | WP_001071648.1 | nucleoside triphosphate pyrophosphohydrolase | - |
| EXA04_RS05425 (1117741) | 1117741..1119378 | + | 1638 | WP_000210878.1 | CTP synthase (glutamine hydrolyzing) | - |
| EXA04_RS05430 (1119466) | 1119466..1120764 | + | 1299 | WP_000036723.1 | phosphopyruvate hydratase | - |
| EXA04_RS05435 (1120824) | 1120824..1121696 | - | 873 | WP_001268452.1 | YgcG family protein | - |
| EXA04_RS05440 (1121710) | 1121710..1121850 | - | 141 | WP_001288227.1 | cell envelope stress response protein YqcG | - |
| EXA04_RS05445 (1121989) | 1121989..1122660 | + | 672 | WP_001199973.1 | 7-carboxy-7-deazaguanine synthase QueE | - |
| EXA04_RS05450 (1124521) | 1124521..1125999 | - | 1479 | WP_000039749.1 | FGGY-family carbohydrate kinase | - |
| EXA04_RS05455 (1126026) | 1126026..1127303 | - | 1278 | WP_001164567.1 | MFS transporter | - |
| EXA04_RS05460 (1127622) | 1127622..1128407 | + | 786 | WP_000021321.1 | hypothetical protein | VF |
| EXA04_RS05465 (1128477) | 1128477..1129931 | + | 1455 | WP_000059311.1 | FAD-binding oxidoreductase | - |
| EXA04_RS05470 (1129953) | 1129953..1131362 | + | 1410 | WP_000147666.1 | MFS transporter | - |
| EXA04_RS05475 (1131340) | 1131340..1132119 | + | 780 | WP_001324445.1 | electron transfer flavoprotein subunit beta/FixA family protein | - |
| EXA04_RS05480 (1132116) | 1132116..1132976 | + | 861 | WP_001696770.1 | electron transfer flavoprotein subunit alpha/FixB family protein | - |
| EXA04_RS05485 (1133124) | 1133124..1133675 | - | 552 | WP_216317243.1 | glycerol-3-phosphate responsive antiterminator | - |
| EXA04_RS05490 (1133706) | 1133706..1134278 | - | 573 | WP_000904922.1 | Tn3 family transposase TnpR_TnShfr1 | Transposase |
| EXA04_RS05495 (1134404) | 1134404..1134706 | + | 303 | WP_164717733.1 | phage tail protein | - |
| EXA04_RS05500 (1134710) | 1134710..1135129 | + | 420 | WP_032251017.1 | tail fiber assembly protein | - |
| EXA04_RS05505 (1135101) | 1135101..1135694 | - | 594 | WP_001696583.1 | tail fiber assembly protein | - |
| EXA04_RS05510 (1135694) | 1135694..1137310 | - | 1617 | WP_099481755.1 | phage tail protein | - |
| EXA04_RS05515 (1137313) | 1137313..1137891 | - | 579 | WP_000138756.1 | phage tail protein I | - |
| EXA04_RS05520 (1137884) | 1137884..1138987 | - | 1104 | WP_001219099.1 | baseplate J/gp47 family protein | - |
| EXA04_RS05525 (1138978) | 1138978..1139325 | - | 348 | WP_000859116.1 | GPW/gp25 family protein | - |
| EXA04_RS05530 (1139380) | 1139380..1139976 | - | 597 | WP_000148267.1 | phage baseplate assembly protein V | - |
| EXA04_RS05535 (1139973) | 1139973..1141127 | - | 1155 | WP_000808006.1 | contractile injection system protein, VgrG/Pvc8 family | - |
| EXA04_RS05540 (1141115) | 1141115..1141327 | - | 213 | WP_000478224.1 | tail protein X | - |
| EXA04_RS05545 (1141327) | 1141327..1142211 | - | 885 | WP_000458386.1 | phage tail protein | - |
| EXA04_RS05550 (1142211) | 1142211..1145162 | - | 2952 | WP_032327409.1 | phage tail tape measure protein | - |
| EXA04_RS05560 (1145320) | 1145320..1145655 | - | 336 | WP_001513982.1 | phage tail assembly protein | - |
| EXA04_RS05565 (1145753) | 1145753..1146034 | - | 282 | WP_000110119.1 | hypothetical protein | - |
| EXA04_RS05570 (1146037) | 1146037..1146561 | - | 525 | WP_162832341.1 | phage major tail tube protein | - |
| EXA04_RS05575 (1146558) | 1146558..1147985 | - | 1428 | WP_000729834.1 | phage tail sheath subtilisin-like domain-containing protein | - |
| EXA04_RS05580 (1147975) | 1147975..1148226 | - | 252 | WP_000649385.1 | hypothetical protein | - |
| EXA04_RS05585 (1148226) | 1148226..1148690 | - | 465 | WP_001101803.1 | Gp37 family protein | - |
| EXA04_RS05590 (1148690) | 1148690..1149136 | - | 447 | WP_000271668.1 | DUF1320 domain-containing protein | - |
| EXA04_RS05595 (1149138) | 1149138..1149476 | - | 339 | WP_000537457.1 | DUF2190 family protein | - |
| EXA04_RS05600 (1149486) | 1149486..1150439 | - | 954 | WP_001286908.1 | hypothetical protein | - |
| EXA04_RS05605 (1150454) | 1150454..1151569 | - | 1116 | WP_001273069.1 | hypothetical protein | - |
| EXA04_RS05610 (1151784) | 1151784..1152242 | - | 459 | WP_000135514.1 | phage virion morphogenesis protein | - |
| EXA04_RS05615 (1152245) | 1152245..1153066 | - | 822 | WP_001696568.1 | phage minor head protein | - |
| EXA04_RS05620 (1153047) | 1153047..1154543 | - | 1497 | WP_021512536.1 | DUF935 domain-containing protein | - |
| EXA04_RS05625 (1154543) | 1154543..1156084 | - | 1542 | WP_174714518.1 | hypothetical protein | - |
| EXA04_RS05630 (1156135) | 1156135..1156680 | - | 546 | WP_000124060.1 | DUF3486 family protein | - |
| EXA04_RS05635 (1156680) | 1156680..1156991 | - | 312 | WP_000227700.1 | hypothetical protein | - |
| EXA04_RS05640 (1156991) | 1156991..1157317 | - | 327 | WP_000175097.1 | membrane protein | - |
| EXA04_RS05645 (1157314) | 1157314..1157964 | - | 651 | WP_000264661.1 | hypothetical protein | - |
| EXA04_RS05650 (1157948) | 1157948..1158688 | - | 741 | WP_001104439.1 | transglycosylase SLT domain-containing protein | - |
| EXA04_RS05655 (1158691) | 1158691..1159041 | - | 351 | WP_000793146.1 | putative holin | - |
| EXA04_RS05660 (1159172) | 1159172..1159648 | + | 477 | WP_000149906.1 | ABC transporter ATPase | - |
| EXA04_RS05665 (1159686) | 1159686..1160267 | - | 582 | WP_000907412.1 | hypothetical protein | - |
| EXA04_RS05670 (1160358) | 1160358..1161344 | - | 987 | WP_000031883.1 | hypothetical protein | - |
| EXA04_RS05675 (1161341) | 1161341..1161802 | - | 462 | WP_001259268.1 | helix-turn-helix transcriptional regulator | - |
| EXA04_RS05680 (1161853) | 1161853..1162041 | + | 189 | WP_000200153.1 | DNA-binding protein | - |
| EXA04_RS05685 (1162094) | 1162094..1162402 | + | 309 | WP_000049025.1 | helix-turn-helix domain-containing protein | - |
| EXA04_RS05690 (1162413) | 1162413..1163327 | + | 915 | WP_000533821.1 | DUF3102 domain-containing protein | - |
| EXA04_RS05695 (1163331) | 1163331..1165100 | + | 1770 | WP_001529009.1 | hypothetical protein ; Integrase | Integrase |
| EXA04_RS05700 (1165111) | 1165111..1166277 | + | 1167 | WP_000960680.1 | AAA family ATPase | - |
| EXA04_RS05705 (1166280) | 1166280..1166549 | + | 270 | WP_000843446.1 | hypothetical protein | - |
| EXA04_RS05710 (1166577) | 1166577..1167107 | + | 531 | WP_001140136.1 | host-nuclease inhibitor Gam family protein | - |
| EXA04_RS05715 (1167396) | 1167396..1167668 | + | 273 | WP_000632580.1 | hypothetical protein | - |
| EXA04_RS05720 (1167678) | 1167678..1167974 | + | 297 | WP_001299260.1 | hypothetical protein | - |
| EXA04_RS05725 (1167989) | 1167989..1168204 | + | 216 | WP_000763554.1 | hypothetical protein | - |
| EXA04_RS05730 (1168201) | 1168201..1168884 | + | 684 | WP_000132037.1 | DUF2786 domain-containing protein | - |
| EXA04_RS05735 (1168881) | 1168881..1169111 | + | 231 | WP_000631819.1 | hypothetical protein | - |
| EXA04_RS05740 (1169101) | 1169101..1169316 | + | 216 | WP_000123379.1 | hypothetical protein | - |
| EXA04_RS05745 (1169309) | 1169309..1169758 | + | 450 | WP_001299262.1 | regulatory protein GemA | - |
| EXA04_RS05750 (1169730) | 1169730..1170119 | + | 390 | WP_001281695.1 | Mor transcription activator family protein | - |
| EXA04_RS05755 (1170281) | 1170281..1170358 | - | 78 | Protein_1127 | glycerol-3-phosphate responsive antiterminator | - |
| EXA04_RS05760 (1170375) | 1170375..1170635 | - | 261 | WP_000109367.1 | ferredoxin family protein | - |
| EXA04_RS05765 (1170626) | 1170626..1171897 | - | 1272 | WP_001349983.1 | FAD-dependent oxidoreductase | - |
| EXA04_RS05770 (1171975) | 1171975..1172337 | - | 363 | WP_000108294.1 | 6-carboxytetrahydropterin synthase QueD | - |
| EXA04_RS05775 (1172656) | 1172656..1174455 | + | 1800 | WP_000211897.1 | NADPH-dependent assimilatory sulfite reductase flavoprotein subunit | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|