MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 153015 bp
Accession: NZ_CP035548 Location: 1..153015 Organism: Salmonella enterica subsp. enterica serovar Typhimurium strain YU07-18 Replicon: plasmid pYU07-18_IncA/C2
Accession: NZ_CP035548 Location: 1..153015 Organism: Salmonella enterica subsp. enterica serovar Typhimurium strain YU07-18 Replicon: plasmid pYU07-18_IncA/C2
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D6D39_RS25185 () | 1..1101 | + | 1101 | WP_000350011.1 | plasmid replication protein | - |
| D6D39_RS23625 () | 2138..2572 | - | 435 | WP_000883925.1 | hypothetical protein | - |
| D6D39_RS23630 () | 2590..3705 | - | 1116 | WP_000946102.1 | phosphoadenosine phosphosulfate reductase family protein | - |
| D6D39_RS23640 () | 3974..4582 | + | 609 | WP_000849071.1 | hypothetical protein | - |
| D6D39_RS23645 () | 4587..5108 | + | 522 | WP_000393785.1 | hypothetical protein | - |
| D6D39_RS23650 () | 5111..5632 | + | 522 | WP_000805800.1 | hypothetical protein | - |
| D6D39_RS23655 () | 5729..6202 | + | 474 | WP_000057877.1 | hypothetical protein | - |
| D6D39_RS23660 () | 6213..6506 | + | 294 | WP_001370730.1 | hypothetical protein | - |
| D6D39_RS23665 () | 6511..7365 | + | 855 | WP_000539392.1 | hypothetical protein | - |
| D6D39_RS23670 () | 7365..8324 | + | 960 | WP_000829616.1 | S49 family peptidase | - |
| D6D39_RS23675 () | 8340..9200 | + | 861 | WP_000139698.1 | DsbA family protein | - |
| D6D39_RS23680 () | 9234..9662 | + | 429 | WP_000591074.1 | hypothetical protein | - |
| D6D39_RS23685 () | 9719..10078 | + | 360 | WP_000422768.1 | hypothetical protein | - |
| D6D39_RS23690 () | 10078..10524 | + | 447 | WP_000919345.1 | Fe3+-siderophore ABC transporter permease | - |
| D6D39_RS23695 () | 10521..11039 | + | 519 | WP_000210756.1 | nitrite reductase | - |
| D6D39_RS23700 () | 11039..11269 | + | 231 | WP_000972663.1 | hypothetical protein | - |
| D6D39_RS23705 () | 11256..12113 | + | 858 | WP_001167032.1 | hypothetical protein | - |
| D6D39_RS23715 () | 12344..12871 | + | 528 | WP_001236377.1 | thermonuclease family protein | - |
| D6D39_RS23720 () | 12929..13201 | + | 273 | WP_001043047.1 | HU family DNA-binding protein | - |
| D6D39_RS23725 () | 13289..13582 | + | 294 | WP_001239997.1 | chromosome segregation protein ParM | - |
| D6D39_RS23730 () | 13609..13911 | - | 303 | WP_000124640.1 | XRE family transcriptional regulator | Antitoxin Detail |
| D6D39_RS23735 () | 13916..14266 | - | 351 | WP_000270043.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| D6D39_RS23740 () | 14429..14977 | + | 549 | WP_001061574.1 | transcriptional regulator | - |
| D6D39_RS23750 () | 15318..15512 | + | 195 | WP_000343597.1 | hypothetical protein | - |
| D6D39_RS23755 () | 15523..15894 | + | 372 | WP_000516916.1 | hypothetical protein | - |
| D6D39_RS23760 () | 15887..16357 | + | 471 | WP_001281821.1 | hypothetical protein | - |
| D6D39_RS23765 () | 16372..16707 | - | 336 | WP_000683476.1 | hypothetical protein | - |
| D6D39_RS23770 () | 16804..17292 | + | 489 | WP_001273096.1 | DUF1643 domain-containing protein | - |
| D6D39_RS23775 () | 17295..17792 | + | 498 | WP_000062185.1 | hypothetical protein | - |
| D6D39_RS23780 () | 18007..18711 | - | 705 | WP_001067855.1 | IS6-like element IS26 family transposase | - |
| D6D39_RS23785 () | 18776..18955 | - | 180 | Protein_31 | helix-turn-helix transcriptional regulator | - |
| D6D39_RS23790 () | 19262..19966 | + | 705 | WP_001067855.1 | IS6-like element IS26 family transposase | - |
| D6D39_RS23795 () | 19972..20112 | + | 141 | WP_001044210.1 | hypothetical protein | - |
| D6D39_RS23800 () | 20598..21335 | + | 738 | WP_001366550.1 | recombinase family protein | - |
| D6D39_RS23805 () | 21332..21556 | + | 225 | WP_000743213.1 | hypothetical protein | - |
| D6D39_RS23810 () | 21767..23260 | + | 1494 | WP_001120888.1 | IS91-like element ISVsa3 family transposase | - |
| D6D39_RS25190 () | 23729..24175 | + | 447 | Protein_37 | DUF3363 domain-containing protein | - |
| D6D39_RS23820 () | 24392..25606 | + | 1215 | WP_000214123.1 | chloramphenicol/florfenicol efflux MFS transporter FloR | - |
| D6D39_RS23825 () | 25634..25939 | + | 306 | WP_001255015.1 | LysR family transcriptional regulator | - |
| D6D39_RS23830 () | 26051..26239 | + | 189 | Protein_40 | IS91 family transposase | - |
| D6D39_RS23835 () | 26206..27405 | - | 1200 | WP_000804063.1 | tetracycline efflux MFS transporter Tet(A) | - |
| D6D39_RS23840 () | 27511..28161 | + | 651 | WP_000164043.1 | tetracycline resistance transcriptional repressor TetR(A) | - |
| D6D39_RS23845 () | 28193..28435 | - | 243 | WP_000844627.1 | transposase | - |
| D6D39_RS23855 () | 28741..29577 | - | 837 | WP_000480968.1 | aminoglycoside O-phosphotransferase APH(6)-Id | - |
| D6D39_RS23860 () | 29577..30380 | - | 804 | WP_001082319.1 | aminoglycoside O-phosphotransferase APH(3'')-Ib | - |
| D6D39_RS23865 () | 30441..31256 | - | 816 | WP_001043260.1 | sulfonamide-resistant dihydropteroate synthase Sul2 | - |
| D6D39_RS23875 () | 31563..31874 | + | 312 | WP_000338945.1 | hypothetical protein | - |
| D6D39_RS23885 () | 32048..32833 | + | 786 | WP_001151304.1 | ParA family protein | - |
| D6D39_RS23890 () | 32837..34018 | + | 1182 | WP_001207227.1 | ParB/RepB/Spo0J family partition protein | - |
| D6D39_RS23895 () | 34067..34339 | + | 273 | WP_000703827.1 | helix-turn-helix domain-containing protein | - |
| D6D39_RS23900 () | 34392..35027 | - | 636 | WP_000074431.1 | N-6 DNA methylase | - |
| D6D39_RS23905 () | 35119..35262 | - | 144 | WP_000939033.1 | hypothetical protein | - |
| D6D39_RS23910 () | 35589..35966 | + | 378 | WP_001125904.1 | hypothetical protein | - |
| D6D39_RS25195 () | 35959..36240 | + | 282 | WP_000044823.1 | hypothetical protein | - |
| D6D39_RS23925 () | 36215..36889 | + | 675 | WP_000344149.1 | hypothetical protein | - |
| D6D39_RS23930 () | 36957..37388 | + | 432 | WP_001326170.1 | hypothetical protein | - |
| D6D39_RS23935 () | 37394..37705 | + | 312 | WP_001447539.1 | hypothetical protein | - |
| D6D39_RS23940 () | 37714..38214 | + | 501 | WP_000647188.1 | hypothetical protein | - |
| D6D39_RS23945 () | 38218..39645 | + | 1428 | WP_000936897.1 | DNA cytosine methyltransferase | - |
| D6D39_RS23950 () | 39645..40301 | + | 657 | WP_000268552.1 | hypothetical protein | - |
| D6D39_RS23955 () | 40357..40974 | + | 618 | WP_000464630.1 | hypothetical protein | - |
| D6D39_RS23960 () | 41186..41485 | + | 300 | WP_001326171.1 | hypothetical protein | - |
| D6D39_RS23965 () | 41576..42064 | - | 489 | WP_000467110.1 | hypothetical protein | - |
| D6D39_RS23970 () | 42079..44271 | - | 2193 | WP_000366823.1 | DNA topoisomerase 3 | - |
| D6D39_RS23975 () | 44271..44504 | - | 234 | WP_001191890.1 | hypothetical protein | - |
| D6D39_RS23980 () | 44486..45103 | - | 618 | WP_001249395.1 | hypothetical protein | - |
| D6D39_RS23985 () | 45271..48243 | + | 2973 | WP_001326173.1 | TraI domain-containing protein | - |
| D6D39_RS23990 () | 48240..50105 | + | 1866 | WP_000178857.1 | conjugative transfer system coupling protein TraD | - |
| D6D39_RS23995 () | 50116..50700 | + | 585 | WP_000332868.1 | hypothetical protein | - |
| D6D39_RS24000 () | 50657..51286 | + | 630 | WP_000743449.1 | DUF4400 domain-containing protein | - |
| D6D39_RS24005 () | 51296..51742 | + | 447 | WP_000122507.1 | hypothetical protein | - |
| D6D39_RS24010 () | 51752..52129 | + | 378 | WP_000869297.1 | hypothetical protein | - |
| D6D39_RS24015 () | 52129..52791 | + | 663 | WP_001231464.1 | hypothetical protein | - |
| D6D39_RS24020 () | 53115..53492 | + | 378 | WP_001326174.1 | hypothetical protein | - |
| D6D39_RS24025 () | 53637..53918 | + | 282 | WP_000805625.1 | type IV conjugative transfer system protein TraL | - |
| D6D39_RS24030 () | 53915..54541 | + | 627 | WP_001049717.1 | hypothetical protein | - |
| D6D39_RS24035 () | 54525..55442 | + | 918 | WP_000794249.1 | type-F conjugative transfer system secretin TraK | - |
| D6D39_RS24040 () | 55442..56755 | + | 1314 | WP_024131605.1 | conjugal transfer protein TraB | - |
| D6D39_RS24045 () | 56752..57330 | + | 579 | WP_000793435.1 | type IV conjugative transfer system lipoprotein TraV | - |
| D6D39_RS24050 () | 57334..57726 | + | 393 | WP_000479535.1 | hypothetical protein | - |
| D6D39_RS24055 () | 58011..59273 | + | 1263 | WP_000608644.1 | IS1380-like element ISEc9 family transposase | - |
| D6D39_RS24060 () | 59597..60742 | + | 1146 | WP_000976514.1 | class C beta-lactamase CMY-2 | - |
| D6D39_RS24065 () | 60836..61369 | + | 534 | WP_001221666.1 | lipocalin family protein | - |
| D6D39_RS24070 () | 61366..61683 | - | 318 | WP_000118520.1 | quaternary ammonium compound efflux SMR transporter SugE | - |
| D6D39_RS24080 () | 62411..67897 | + | 5487 | WP_000606835.1 | DUF4165 domain-containing protein | - |
| D6D39_RS24085 () | 68046..68753 | + | 708 | WP_001259346.1 | DsbC family protein | - |
| D6D39_RS24090 () | 68750..71197 | + | 2448 | WP_000637384.1 | type IV secretion system protein TraC | - |
| D6D39_RS24095 () | 71212..71529 | + | 318 | WP_000351984.1 | hypothetical protein | - |
| D6D39_RS24100 () | 71526..72056 | + | 531 | WP_001010740.1 | S26 family signal peptidase | - |
| D6D39_RS24105 () | 72019..73284 | + | 1266 | WP_001447719.1 | conjugal transfer protein TraW | - |
| D6D39_RS24110 () | 73281..73952 | + | 672 | WP_000575345.1 | EAL domain-containing protein | - |
| D6D39_RS24115 () | 73949..74956 | + | 1008 | WP_000983282.1 | TraU family protein | - |
| D6D39_RS24120 () | 75060..77867 | + | 2808 | WP_001447718.1 | conjugal transfer mating pair stabilization protein TraN | - |
| D6D39_RS24125 () | 77906..78766 | - | 861 | WP_000709517.1 | hypothetical protein | - |
| D6D39_RS24130 () | 78889..79530 | - | 642 | WP_000796664.1 | hypothetical protein | - |
| D6D39_RS24135 () | 79824..80144 | + | 321 | WP_000547566.1 | hypothetical protein | - |
| D6D39_RS24140 () | 80448..80633 | + | 186 | WP_001186917.1 | hypothetical protein | - |
| D6D39_RS24145 () | 80853..81821 | + | 969 | WP_000085160.1 | CbbQ/NirQ/NorQ C-terminal domain-containing protein | - |
| D6D39_RS24150 () | 81832..82740 | + | 909 | WP_000739139.1 | hypothetical protein | - |
| D6D39_RS24155 () | 82801..83331 | + | 531 | WP_000987165.1 | single-stranded DNA-binding protein | - |
| D6D39_RS24160 () | 83426..84415 | + | 990 | WP_001282585.1 | phage recombination protein Bet | - |
| D6D39_RS24165 () | 84478..85488 | + | 1011 | WP_000706865.1 | YqaJ viral recombinase family protein | - |
| D6D39_RS24170 () | 85734..86438 | - | 705 | WP_001067858.1 | IS6-like element IS26 family transposase | - |
| D6D39_RS24175 () | 86612..86962 | + | 351 | WP_001132147.1 | peptidoglycan DD-metalloendopeptidase family protein | - |
| D6D39_RS24180 () | 86996..87193 | - | 198 | WP_000843496.1 | DUF2933 domain-containing protein | - |
| D6D39_RS24185 () | 87234..89711 | - | 2478 | WP_001398208.1 | Ag(+)-translocating P-type ATPase SilP | - |
| D6D39_RS24190 () | 89808..90248 | - | 441 | WP_000758221.1 | hypothetical protein | - |
| D6D39_RS24195 () | 90335..93481 | - | 3147 | WP_022630998.1 | Cu(+)/Ag(+) efflux RND transporter permease subunit SilA | - |
| D6D39_RS24200 () | 93492..94784 | - | 1293 | WP_001398209.1 | Cu(+)/Ag(+) efflux RND transporter periplasmic adaptor subunit SilB | - |
| D6D39_RS24205 () | 94898..95251 | - | 354 | WP_001246155.1 | cation efflux system protein CusF | - |
| D6D39_RS24210 () | 95279..96664 | - | 1386 | WP_000475512.1 | Cu(+)/Ag(+) efflux RND transporter outer membrane channel SilC | - |
| D6D39_RS24215 () | 96854..97534 | + | 681 | WP_000697969.1 | copper/silver response regulator transcription factor SilR | - |
| D6D39_RS24220 () | 97527..99002 | + | 1476 | WP_022630999.1 | copper/silver sensor histidine kinase SilS | - |
| D6D39_RS24225 () | 99253..99684 | + | 432 | WP_000790483.1 | silver-binding protein SilE | - |
| D6D39_RS24230 () | 99828..100178 | + | 351 | WP_000694953.1 | DUF305 domain-containing protein | - |
| D6D39_RS24235 () | 100566..101474 | - | 909 | Protein_116 | HNH endonuclease | - |
| D6D39_RS24240 () | 102111..103085 | + | 975 | WP_001148756.1 | sensor domain-containing diguanylate cyclase | - |
| D6D39_RS24245 () | 104016..104687 | + | 672 | WP_000796235.1 | hypothetical protein | - |
| D6D39_RS24250 () | 104707..105495 | + | 789 | WP_022631000.1 | site-specific integrase | - |
| D6D39_RS24255 () | 105789..106685 | - | 897 | Protein_120 | IS3 family transposase | - |
| D6D39_RS24260 () | 106695..107219 | - | 525 | Protein_121 | IS30-like element IS30 family transposase | - |
| D6D39_RS24265 () | 107285..107989 | + | 705 | WP_001067858.1 | IS6-like element IS26 family transposase | - |
| D6D39_RS24270 () | 108158..108637 | + | 480 | WP_000888203.1 | Rrf2 family transcriptional regulator | - |
| D6D39_RS24275 () | 108707..111859 | - | 3153 | WP_000347934.1 | multidrug efflux RND transporter permease subunit OqxB | - |
| D6D39_RS24280 () | 111883..113058 | - | 1176 | WP_002914189.1 | multidrug efflux RND transporter periplasmic adaptor subunit OqxA | - |
| D6D39_RS24285 () | 113378..114082 | + | 705 | WP_001067858.1 | IS6-like element IS26 family transposase | - |
| D6D39_RS24290 () | 114276..114662 | + | 387 | WP_063102497.1 | bleomycin binding protein | - |
| D6D39_RS24295 () | 114982..115374 | - | 393 | WP_000084745.1 | pyridoxamine 5'-phosphate oxidase family protein | - |
| D6D39_RS24300 () | 115859..116650 | - | 792 | WP_001206356.1 | ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA2 | - |
| D6D39_RS24305 () | 116656..116946 | - | 291 | WP_001336345.1 | DUF1010 domain-containing protein | - |
| D6D39_RS24310 () | 117058..117555 | - | 498 | WP_001083725.1 | trimethoprim-resistant dihydrofolate reductase DfrA12 | - |
| D6D39_RS24315 () | 117700..118713 | + | 1014 | WP_000845054.1 | class 1 integron integrase IntI1 | - |
| D6D39_RS24320 () | 118848..119552 | - | 705 | WP_001067858.1 | IS6-like element IS26 family transposase | - |
| D6D39_RS24325 () | 119629..119994 | - | 366 | WP_000995361.1 | mercury resistance co-regulator MerD | - |
| D6D39_RS24330 () | 120106..120744 | - | 639 | WP_000761850.1 | organomercurial lyase MerB | - |
| D6D39_RS24335 () | 120759..122444 | - | 1686 | WP_000149288.1 | mercury(II) reductase | - |
| D6D39_RS24340 () | 122516..122791 | - | 276 | WP_000732290.1 | mercury resistance system periplasmic binding protein MerP | - |
| D6D39_RS24345 () | 122807..123157 | - | 351 | WP_001294666.1 | mercuric transport protein MerT | - |
| D6D39_RS24350 () | 123229..123663 | + | 435 | WP_000414383.1 | mercury resistance transcriptional regulator MerR | - |
| D6D39_RS24355 () | 123763..124767 | + | 1005 | WP_000427623.1 | IS110-like element IS4321 family transposase | - |
| D6D39_RS24360 () | 125044..125163 | + | 120 | Protein_141 | permease | - |
| D6D39_RS24365 () | 125173..125289 | + | 117 | WP_000338626.1 | hypothetical protein | - |
| D6D39_RS24370 () | 125410..125784 | + | 375 | WP_000868820.1 | hypothetical protein | - |
| D6D39_RS24375 () | 125899..126624 | + | 726 | WP_000988731.1 | hypothetical protein | - |
| D6D39_RS24385 () | 126757..131010 | + | 4254 | WP_001257735.1 | RHS domain-containing protein | - |
| D6D39_RS24390 () | 130982..131422 | + | 441 | WP_001326394.1 | hypothetical protein | - |
| D6D39_RS24395 () | 131593..132045 | + | 453 | Protein_147 | hypothetical protein | - |
| D6D39_RS24400 () | 132061..132663 | - | 603 | WP_000278322.1 | hypothetical protein | - |
| D6D39_RS24405 () | 132933..133214 | + | 282 | WP_000575657.1 | hypothetical protein | - |
| D6D39_RS24410 () | 133513..134049 | + | 537 | WP_000949433.1 | hypothetical protein | - |
| D6D39_RS24415 () | 134052..135062 | + | 1011 | WP_000543934.1 | tyrosine-type recombinase/integrase | - |
| D6D39_RS24420 () | 135067..135936 | + | 870 | WP_000997323.1 | 3'-5' exonuclease | - |
| D6D39_RS24425 () | 135933..136424 | + | 492 | WP_000139717.1 | hypothetical protein | - |
| D6D39_RS24435 () | 136751..137626 | + | 876 | WP_001097010.1 | DNA replication terminus site-binding protein | - |
| D6D39_RS24440 () | 137788..138828 | + | 1041 | WP_000101568.1 | DNA-binding protein | - |
| D6D39_RS24445 () | 139115..140626 | + | 1512 | WP_000811656.1 | UvrD-helicase domain-containing protein | - |
| D6D39_RS24450 () | 140737..141777 | + | 1041 | WP_001326396.1 | conjugal transfer protein TraF | - |
| D6D39_RS24455 () | 141779..143212 | + | 1434 | WP_000256129.1 | conjugal transfer protein TraH | - |
| D6D39_RS24460 () | 143225..146839 | + | 3615 | WP_000534551.1 | conjugal transfer protein TraG N-terminal domain-containing protein | - |
| D6D39_RS24465 () | 146877..147239 | - | 363 | WP_000683483.1 | hypothetical protein | - |
| D6D39_RS24470 () | 147955..148227 | + | 273 | WP_000356489.1 | helix-turn-helix domain-containing protein | - |
| D6D39_RS24475 () | 148227..148760 | + | 534 | WP_000790610.1 | transglycosylase SLT domain-containing protein | - |
| D6D39_RS24480 () | 148771..149379 | + | 609 | Protein_163 | transcriptional regulator | - |
| D6D39_RS24485 () | 149376..149927 | + | 552 | WP_001020646.1 | hypothetical protein | - |
| D6D39_RS24490 () | 149987..150406 | - | 420 | WP_000651490.1 | H-NS histone family protein | - |
| D6D39_RS24495 () | 150408..150701 | - | 294 | WP_000919078.1 | hypothetical protein | - |
| D6D39_RS24500 () | 150718..151701 | - | 984 | WP_000077458.1 | ParM/StbA family protein | - |
| D6D39_RS24505 () | 152200..152739 | + | 540 | WP_001447712.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|