MGE detailed information
MGE type: Prophage MGE length: 49040 bp
Accession: NZ_CP034931 Location: 2002307..2051346 Organism: Shigella flexneri strain 2013C-3749 Replicon: chromosome
Accession: NZ_CP034931 Location: 2002307..2051346 Organism: Shigella flexneri strain 2013C-3749 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EPD86_RS10290 () | 1998548..1999246 | - | 699 | WP_000431370.1 | RNA chaperone ProQ | - |
| EPD86_RS10295 () | 1999343..1999840 | - | 498 | WP_001043881.1 | L-methionine (R)-S-oxide reductase | - |
| EPD86_RS10300 () | 1999970..2001253 | + | 1284 | WP_001207280.1 | membrane integrity lipid transport subunit YebS | - |
| EPD86_RS10305 () | 2001222..2003842 | + | 2621 | Protein_1999 | hypothetical protein | VF |
| EPD86_RS10310 () | 2003922..2005361 | + | 1440 | Protein_2000 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| EPD86_RS10315 () | 2005479..2005715 | + | 237 | WP_001295499.1 | YebV family protein | - |
| EPD86_RS10320 () | 2005820..2006011 | + | 192 | WP_005049838.1 | YebW family protein | - |
| EPD86_RS10325 () | 2006036..2006224 | - | 189 | Protein_2003 | serine/threonine-protein phosphatase | - |
| EPD86_RS10335 () | 2007489..2007935 | - | 447 | Protein_2005 | metallophosphoesterase | - |
| EPD86_RS10345 () | 2009454..2011169 | + | 1716 | WP_128568580.1 | hypothetical protein | VF |
| EPD86_RS25735 () | 2011239..2011343 | - | 105 | Protein_2008 | tail fiber assembly protein | - |
| EPD86_RS10350 () | 2011349..2011972 | - | 624 | WP_000930142.1 | DUF4376 domain-containing protein | - |
| EPD86_RS25360 () | 2011923..2012090 | - | 168 | Protein_2010 | IS66 family transposase ISSfl3 | Transposase |
| EPD86_RS25365 () | 2012092..2012472 | - | 381 | Protein_2011 | IS66 family transposase ISSfl3 | Transposase |
| EPD86_RS10360 () | 2013696..2014584 | + | 889 | Protein_2012 | Rha family transcriptional regulator | - |
| EPD86_RS10365 () | 2014581..2015854 | + | 1274 | WP_094081546.1 | IS3 family transposase IS2 | Transposase |
| EPD86_RS10370 () | 2015931..2016152 | + | 222 | WP_000560210.1 | cell division protein FtsZ | - |
| EPD86_RS10375 () | 2016152..2016322 | + | 171 | WP_001359121.1 | YdaE family protein | - |
| EPD86_RS10380 () | 2016397..2016672 | + | 276 | WP_005049830.1 | hypothetical protein | - |
| EPD86_RS10385 () | 2016772..2018187 | + | 1416 | Protein_2017 | exodeoxyribonuclease VIII | - |
| EPD86_RS10390 () | 2018244..2019400 | - | 1157 | Protein_2018 | IS3 family transposase IS600 | Transposase |
| EPD86_RS10400 () | 2019499..2019759 | + | 261 | WP_005135630.1 | host-nuclease inhibitor Gam family protein | - |
| EPD86_RS10405 () | 2019765..2020862 | + | 1098 | WP_001173294.1 | AAA family ATPase | - |
| EPD86_RS10410 () | 2020937..2022146 | + | 1210 | Protein_2021 | IS3 family transposase IS629 | Transposase |
| EPD86_RS10415 () | 2022194..2022361 | + | 168 | WP_005049823.1 | excisionase family protein | - |
| EPD86_RS10420 () | 2022363..2022533 | + | 171 | Protein_2023 | DUF3596 domain-containing protein | - |
| EPD86_RS10430 () | 2023301..2023942 | + | 642 | Protein_2025 | Transcription elongation factor GreA ; Integrase | Integrase |
| EPD86_RS10435 () | 2024374..2025288 | + | 915 | WP_000555620.1 | Dipeptidase A | VF |
| EPD86_RS10440 () | 2025288..2026115 | + | 828 | WP_000983722.1 | Vitamin B12 import ATP-binding protein BtuD | VF |
| EPD86_RS10445 () | 2026112..2026969 | + | 858 | WP_001101728.1 | Calcium-transporting ATPase | ARG |
| EPD86_RS10450 () | 2026966..2027823 | + | 858 | WP_000968134.1 | Dipeptidase A | ARG |
| EPD86_RS10455 () | 2028024..2028647 | - | 624 | WP_000930141.1 | DUF4376 domain-containing protein | - |
| EPD86_RS10460 () | 2028598..2029866 | - | 1269 | WP_005098694.1 | prophage tail fiber N-terminal domain-containing protein | - |
| EPD86_RS10465 () | 2029890..2030434 | - | 545 | Protein_2032 | tail fiber assembly protein | - |
| EPD86_RS10470 () | 2030458..2030826 | - | 369 | WP_011069357.1 | hypothetical protein | - |
| EPD86_RS10475 () | 2030854..2031759 | - | 906 | Protein_2034 | IS3 family transposase ISSd1 | Transposase |
| EPD86_RS10485 () | 2032531..2032683 | - | 153 | Protein_2036 | Rha family transcriptional regulator | - |
| EPD86_RS10495 () | 2035051..2036655 | - | 1605 | WP_000615491.1 | hypothetical protein ; Integrase | Integrase |
| EPD86_RS10520 () | 2037289..2037771 | - | 483 | WP_000068107.1 | ORF6N domain-containing protein | - |
| EPD86_RS10525 () | 2037842..2038981 | - | 1140 | WP_000088353.1 | IS3 family transposase IS600 | Transposase |
| EPD86_RS10530 () | 2039043..2039216 | - | 174 | WP_000504450.1 | hypothetical protein | - |
| EPD86_RS10535 () | 2039369..2039923 | - | 555 | WP_000640143.1 | DUF1133 family protein | - |
| EPD86_RS10540 () | 2039920..2040210 | - | 291 | WP_000228038.1 | DUF1364 domain-containing protein | - |
| EPD86_RS10545 () | 2040210..2040809 | - | 600 | WP_000940329.1 | DUF1367 family protein | - |
| EPD86_RS10550 () | 2040943..2041640 | + | 698 | Protein_2045 | IS1 family transposase | - |
| EPD86_RS10560 () | 2042146..2042301 | - | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | Toxin Detail |
| - | 2042313..2042371 | + | 59 | - | - | Antitoxin Detail |
| EPD86_RS10565 () | 2042756..2043121 | - | 366 | WP_000610655.1 | DUF551 domain-containing protein | - |
| EPD86_RS10570 () | 2043121..2043786 | - | 666 | WP_000208062.1 | hypothetical protein | - |
| EPD86_RS10575 () | 2043783..2044148 | - | 366 | WP_001229297.1 | HNH endonuclease signature motif containing protein | - |
| EPD86_RS10580 () | 2044150..2044368 | - | 219 | WP_000256998.1 | DUF4014 family protein | - |
| EPD86_RS10585 () | 2044461..2044817 | - | 357 | WP_005048249.1 | hypothetical protein | - |
| EPD86_RS10590 () | 2044875..2045297 | - | 423 | WP_001118168.1 | DUF977 family protein | - |
| EPD86_RS10595 () | 2045312..2046058 | - | 747 | WP_000788996.1 | ATP-binding protein | - |
| EPD86_RS25740 () | 2046204..2046373 | - | 170 | Protein_2054 | hypothetical protein | - |
| EPD86_RS10605 () | 2046897..2048125 | + | 1229 | WP_167547301.1 | IS3 family transposase IS2 | Transposase |
| EPD86_RS10610 () | 2048139..2048549 | - | 411 | Protein_2056 | YdaU family protein | - |
| EPD86_RS10620 () | 2048653..2049809 | + | 1157 | WP_094081493.1 | IS3 family transposase IS600 | Transposase |
| EPD86_RS10625 () | 2049854..2050288 | - | 435 | Protein_2058 | HTH-type transcriptional regulator ArgP | VF |
| EPD86_RS10630 () | 2050426..2051346 | + | 921 | WP_000981715.1 | alpha/beta hydrolase | - |
| EPD86_RS10635 () | 2051346..2051705 | + | 360 | Protein_2060 | alpha/beta hydrolase | - |
| EPD86_RS10640 () | 2051722..2052918 | - | 1197 | WP_005084161.1 | IS110-like element ISEc20 family transposase | - |
| EPD86_RS10645 () | 2053147..2053728 | + | 582 | Protein_2062 | alpha/beta hydrolase | - |
| EPD86_RS10650 () | 2053746..2054384 | + | 639 | WP_005049763.1 | SDR family oxidoreductase | - |
| EPD86_RS10655 () | 2054675..2055403 | + | 729 | WP_005049761.1 | murein tripeptide amidase MpaA | - |
| EPD86_RS10660 () | 2055378..2056343 | - | 966 | WP_005049759.1 | L-Ala-D/L-Glu epimerase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|