MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 60302 bp
Accession: NZ_CP034179 Location: 1922818..1983119 Organism: Novosphingobium tardaugens NBRC 16725 Replicon: chromosome
Accession: NZ_CP034179 Location: 1922818..1983119 Organism: Novosphingobium tardaugens NBRC 16725 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EGO55_RS08850 () | 1918521..1919912 | - | 1392 | WP_040715471.1 | M48 family metalloprotease | - |
| EGO55_RS20950 () | 1920013..1921620 | - | 1608 | WP_210766683.1 | hypothetical protein | - |
| EGO55_RS08860 () | 1921845..1922411 | - | 567 | WP_021689780.1 | MmcB family DNA repair protein | - |
| EGO55_RS08870 () | 1923435..1925495 | + | 2061 | WP_021689779.1 | ParB/RepB/Spo0J family partition protein | - |
| EGO55_RS08875 () | 1926245..1926547 | + | 303 | WP_021689778.1 | DUF736 domain-containing protein | - |
| EGO55_RS08880 () | 1926986..1928053 | + | 1068 | WP_021689777.1 | serine protease | - |
| EGO55_RS08885 () | 1928236..1928940 | + | 705 | WP_021689776.1 | hypothetical protein | - |
| EGO55_RS08890 () | 1928937..1929758 | - | 822 | WP_021689775.1 | hypothetical protein | - |
| EGO55_RS08895 () | 1930001..1930894 | + | 894 | WP_021689774.1 | DNA-protecting protein DprA | - |
| EGO55_RS08900 () | 1930887..1931540 | + | 654 | WP_021689773.1 | hypothetical protein | - |
| EGO55_RS08905 () | 1931543..1932580 | + | 1038 | WP_021689772.1 | DNA-protecting protein DprA | - |
| EGO55_RS08910 () | 1932583..1933830 | + | 1248 | WP_021689771.1 | hypothetical protein | - |
| EGO55_RS08915 () | 1934388..1935443 | + | 1056 | WP_021689770.1 | nucleoid-associated protein | - |
| EGO55_RS08920 () | 1935440..1936426 | + | 987 | WP_040715254.1 | RelA/SpoT domain-containing protein | - |
| EGO55_RS08925 () | 1936718..1937527 | - | 810 | WP_021689768.1 | universal stress protein | - |
| EGO55_RS08930 () | 1937544..1938821 | - | 1278 | WP_052023652.1 | Na+/H+ antiporter NhaA | - |
| EGO55_RS08935 () | 1939176..1939403 | + | 228 | WP_021689766.1 | hypothetical protein | - |
| EGO55_RS08940 () | 1939623..1939898 | - | 276 | WP_021689765.1 | HU family DNA-binding protein | - |
| EGO55_RS08945 () | 1940245..1941087 | + | 843 | WP_021689764.1 | DUF945 domain-containing protein | - |
| EGO55_RS08950 () | 1941288..1941500 | + | 213 | WP_021689763.1 | helix-turn-helix transcriptional regulator | - |
| EGO55_RS08955 () | 1941651..1941914 | + | 264 | WP_021689762.1 | DUF2285 domain-containing protein | - |
| EGO55_RS08960 () | 1942073..1942327 | + | 255 | WP_021689761.1 | hypothetical protein | - |
| EGO55_RS20955 () | 1942452..1942856 | + | 405 | WP_052023651.1 | DUF2285 domain-containing protein | - |
| EGO55_RS08970 () | 1942987..1943250 | + | 264 | WP_021689759.1 | helix-turn-helix domain-containing protein | - |
| EGO55_RS08975 () | 1943253..1944125 | + | 873 | WP_021689758.1 | replication initiator protein A | - |
| EGO55_RS08980 () | 1944304..1944942 | + | 639 | WP_021689757.1 | Tetracycline resistance protein TetM from transposon TnFO1 | VF |
| EGO55_RS08985 () | 1944939..1945199 | + | 261 | WP_021689756.1 | hypothetical protein | - |
| EGO55_RS08990 () | 1945196..1945672 | + | 477 | WP_021689755.1 | DUF2840 domain-containing protein | - |
| EGO55_RS08995 () | 1945669..1946250 | + | 582 | WP_021689754.1 | S26 family signal peptidase | - |
| EGO55_RS09000 () | 1946219..1946554 | + | 336 | WP_021689753.1 | DUF736 domain-containing protein | - |
| EGO55_RS09005 () | 1946559..1947287 | + | 729 | WP_021689752.1 | lytic transglycosylase domain-containing protein | - |
| EGO55_RS09010 () | 1947541..1949304 | + | 1764 | WP_021689751.1 | VirD2 family relaxase/mobilization nuclease | - |
| EGO55_RS09015 () | 1949400..1949597 | + | 198 | WP_021689750.1 | type II toxin-antitoxin system VapB family antitoxin | Antitoxin Detail |
| EGO55_RS09020 () | 1949594..1949965 | + | 372 | WP_021689749.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| EGO55_RS09025 () | 1950365..1952362 | + | 1998 | WP_021689748.1 | hypothetical protein | VF |
| EGO55_RS09030 () | 1952379..1952816 | + | 438 | WP_021689747.1 | hypothetical protein | - |
| EGO55_RS09035 () | 1953005..1953979 | + | 975 | WP_052023650.1 | hypothetical protein | VF |
| EGO55_RS09040 () | 1953976..1954308 | + | 333 | WP_021689745.1 | TrbC/VirB2 family protein | - |
| EGO55_RS09045 () | 1954308..1954580 | + | 273 | WP_021689744.1 | VirB3 family type IV secretion system protein | - |
| EGO55_RS09050 () | 1954596..1957046 | + | 2451 | WP_021689743.1 | conjugal transfer protein TrbE | - |
| EGO55_RS09055 () | 1957043..1957765 | + | 723 | WP_021689742.1 | P-type conjugative transfer protein TrbJ | - |
| EGO55_RS09060 () | 1957793..1958062 | + | 270 | WP_021689741.1 | putative entry exclusion protein TrbK-alt | - |
| EGO55_RS09065 () | 1958059..1959438 | + | 1380 | WP_021689740.1 | P-type conjugative transfer protein TrbL | - |
| EGO55_RS09070 () | 1959445..1960128 | + | 684 | WP_021689739.1 | conjugal transfer protein TrbF | - |
| EGO55_RS09075 () | 1960125..1961162 | + | 1038 | WP_021689738.1 | P-type conjugative transfer protein TrbG | - |
| EGO55_RS09080 () | 1961159..1962514 | + | 1356 | WP_021689737.1 | hypothetical protein | VF |
| EGO55_RS09085 () | 1962511..1962729 | + | 219 | WP_021689736.1 | DUF2274 domain-containing protein | - |
| EGO55_RS09090 () | 1962740..1963042 | - | 303 | WP_021689735.1 | hypothetical protein | - |
| EGO55_RS09095 () | 1963105..1964004 | - | 900 | WP_021689734.1 | hypothetical protein | VF |
| EGO55_RS09100 () | 1964287..1966788 | - | 2502 | WP_021689733.1 | heavy metal translocating P-type ATPase | - |
| EGO55_RS09105 () | 1966858..1967208 | - | 351 | WP_124916754.1 | hypothetical protein | - |
| EGO55_RS09110 () | 1967378..1967674 | - | 297 | WP_021689731.1 | zf-TFIIB domain-containing protein | - |
| EGO55_RS09115 () | 1967769..1968377 | - | 609 | WP_040715247.1 | cation diffusion facilitator family transporter | - |
| EGO55_RS09120 () | 1968367..1968879 | - | 513 | WP_021689729.1 | SRPBCC family protein | - |
| EGO55_RS09125 () | 1968927..1969430 | - | 504 | WP_021689728.1 | hypothetical protein | - |
| EGO55_RS09130 () | 1969427..1972669 | - | 3243 | WP_021689727.1 | CusA/CzcA family heavy metal efflux RND transporter | - |
| EGO55_RS09135 () | 1972673..1973842 | - | 1170 | WP_021689726.1 | efflux RND transporter periplasmic adaptor subunit | - |
| EGO55_RS09140 () | 1973845..1975113 | - | 1269 | WP_021689725.1 | TolC family protein | - |
| EGO55_RS09145 () | 1975714..1976364 | - | 651 | WP_021689723.1 | cation diffusion facilitator family transporter | - |
| EGO55_RS09150 () | 1976402..1976890 | + | 489 | WP_210766684.1 | MerR family transcriptional regulator | - |
| EGO55_RS20960 () | 1976928..1977509 | - | 582 | WP_210766685.1 | TonB family protein | - |
| EGO55_RS09160 () | 1977660..1979834 | - | 2175 | WP_021689720.1 | TonB-dependent receptor | - |
| EGO55_RS09165 () | 1979934..1980350 | - | 417 | WP_021689719.1 | hypothetical protein | - |
| EGO55_RS09170 () | 1980507..1981301 | + | 795 | WP_021689718.1 | universal stress protein | - |
| EGO55_RS09175 () | 1981523..1982890 | - | 1368 | WP_021689717.1 | hypothetical protein ; Integrase | Integrase |
| EGO55_RS09180 () | 1983140..1984438 | - | 1299 | WP_021689716.1 | MFS transporter | - |
| EGO55_RS09185 () | 1984522..1985082 | + | 561 | WP_021689715.1 | TetR/AcrR family transcriptional regulator | - |
| EGO55_RS09190 () | 1985187..1987874 | - | 2688 | WP_021689714.1 | EAL domain-containing protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|