MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 117688 bp
Accession: NZ_CP032898 Location: 1518145..1635832 Organism: Helicobacter pylori strain 479-C-EK2 Replicon: chromosome
Accession: NZ_CP032898 Location: 1518145..1635832 Organism: Helicobacter pylori strain 479-C-EK2 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D4L56_RS07385 () | 1513811..1515829 | + | 2019 | WP_139523773.1 | Hop family adhesin HopZ | - |
| D4L56_RS07415 () | 1517018..1517848 | - | 831 | WP_139518933.1 | pantoate--beta-alanine ligase | - |
| D4L56_RS07420 () | 1517849..1518532 | - | 684 | WP_139518934.1 | orotidine-5'-phosphate decarboxylase | - |
| D4L56_RS07425 () | 1518647..1519312 | + | 666 | WP_139518935.1 | carbonic anhydrase | - |
| D4L56_RS07430 () | 1519299..1520129 | + | 831 | WP_139518936.1 | 2-dehydro-3-deoxyphosphooctonate aldolase | VF |
| D4L56_RS07435 () | 1520139..1520609 | + | 471 | WP_001219991.1 | 6,7-dimethyl-8-ribityllumazine synthase | - |
| D4L56_RS07440 () | 1520611..1521027 | + | 417 | WP_000235740.1 | transcription antitermination factor NusB | - |
| D4L56_RS07445 () | 1521334..1522095 | + | 762 | WP_000323682.1 | DUF3944 domain-containing protein | - |
| D4L56_RS07450 () | 1522857..1523821 | + | 965 | Protein_1399 | DUF3944 domain-containing protein | - |
| D4L56_RS07455 () | 1523844..1524632 | - | 789 | WP_064436148.1 | Flagellar basal-body rod protein FlgG | VF |
| D4L56_RS07460 () | 1524804..1525826 | - | 1023 | WP_139518937.1 | tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD | - |
| D4L56_RS07465 () | 1525891..1526814 | - | 924 | WP_139518938.1 | 4-hydroxythreonine-4-phosphate dehydrogenase | VF |
| D4L56_RS07470 () | 1526816..1527604 | - | 789 | WP_139518939.1 | Pyridoxine 5'-phosphate synthase | VF |
| D4L56_RS07475 () | 1527741..1528751 | + | 1011 | WP_139518940.1 | glycosyltransferase family 4 protein | - |
| D4L56_RS07480 () | 1528748..1529344 | + | 597 | WP_180339200.1 | lipid A 4'-phosphatase | - |
| D4L56_RS07485 () | 1529354..1529782 | + | 429 | WP_139518942.1 | hypothetical protein | - |
| D4L56_RS07490 () | 1529831..1530949 | + | 1119 | WP_139518943.1 | glycosyltransferase family 8 protein | - |
| D4L56_RS07495 () | 1530981..1531628 | - | 648 | WP_000625450.1 | ABC transporter permease | - |
| D4L56_RS07500 () | 1531630..1532613 | - | 984 | WP_139518944.1 | Methionine import ATP-binding protein MetN | VF |
| D4L56_RS07505 () | 1532635..1532907 | - | 273 | WP_001044060.1 | Flagellar biosynthetic protein FlhB | VF |
| D4L56_RS07510 () | 1532908..1533528 | - | 621 | WP_139518945.1 | riboflavin synthase | - |
| D4L56_RS07515 () | 1533603..1534367 | + | 765 | WP_000469354.1 | TatD family hydrolase | - |
| D4L56_RS07520 () | 1534459..1535577 | + | 1119 | WP_139523774.1 | lytic transglycosylase domain-containing protein | - |
| D4L56_RS07525 () | 1535577..1536521 | + | 945 | WP_139518947.1 | septal ring lytic transglycosylase RlpA family protein | - |
| D4L56_RS07530 () | 1536518..1537012 | + | 495 | WP_139518948.1 | HAD family hydrolase | - |
| D4L56_RS07535 () | 1536987..1537580 | + | 594 | WP_000831021.1 | hypothetical protein | - |
| D4L56_RS07540 () | 1537580..1538137 | + | 558 | WP_139518949.1 | lipopolysaccharide transport periplasmic protein LptA | - |
| D4L56_RS07545 () | 1538134..1538760 | + | 627 | WP_139518950.1 | ribosome biogenesis GTP-binding protein YihA/YsxC | - |
| D4L56_RS07550 () | 1538773..1539216 | + | 444 | WP_000949829.1 | hypothetical protein | - |
| D4L56_RS07555 () | 1539197..1540963 | + | 1767 | WP_139518951.1 | penicillin-binding protein 2 | - |
| D4L56_RS07560 () | 1541455..1542270 | - | 816 | WP_000990975.1 | D-methionine-binding lipoprotein MetQ | VF |
| D4L56_RS07565 () | 1542417..1543013 | - | 597 | WP_000961672.1 | peroxiredoxin | - |
| D4L56_RS07570 () | 1543252..1544253 | + | 1002 | WP_139518952.1 | ABC transporter substrate-binding protein | - |
| D4L56_RS07575 () | 1544277..1545443 | - | 1167 | WP_139518953.1 | FtsW/RodA/SpoVE family cell cycle protein | - |
| D4L56_RS07585 () | 1545575..1546069 | + | 495 | WP_180339201.1 | Flagellar basal body rod protein FlgB | VF |
| D4L56_RS07590 () | 1546082..1546567 | + | 486 | WP_000480077.1 | Flagellar basal-body rod protein FlgC | VF |
| D4L56_RS07595 () | 1546695..1547024 | + | 330 | WP_001147916.1 | Flagellar hook-basal body complex protein FliE | VF |
| D4L56_RS07600 () | 1547048..1547173 | + | 126 | WP_139518954.1 | transcriptional regulator | - |
| D4L56_RS07605 () | 1547180..1549027 | + | 1848 | WP_139518955.1 | penicillin-binding protein 2 | - |
| D4L56_RS07610 () | 1549157..1550204 | + | 1048 | Protein_1430 | AAA family ATPase | - |
| D4L56_RS07615 () | 1550204..1550886 | + | 683 | Protein_1431 | hypothetical protein | - |
| D4L56_RS07620 () | 1551062..1551919 | - | 858 | WP_079363141.1 | cytochrome c1 | - |
| D4L56_RS07625 () | 1551916..1553154 | - | 1239 | WP_139518956.1 | cytochrome bc complex cytochrome b subunit | - |
| D4L56_RS07630 () | 1553165..1553668 | - | 504 | WP_000763640.1 | ubiquinol-cytochrome c reductase iron-sulfur subunit | - |
| D4L56_RS07635 () | 1553792..1556791 | - | 3000 | WP_139518957.1 | transcription-repair coupling factor | - |
| D4L56_RS07640 () | 1556795..1557205 | - | 411 | WP_000963936.1 | polymer-forming cytoskeletal protein | - |
| D4L56_RS07645 () | 1557124..1558062 | - | 939 | WP_139518958.1 | Murein DD-endopeptidase MepM | VF |
| D4L56_RS07650 () | 1558071..1558997 | - | 927 | WP_139518959.1 | M23 family metallopeptidase | - |
| D4L56_RS07655 () | 1558997..1560181 | - | 1185 | WP_139518960.1 | bifunctional folylpolyglutamate synthase/dihydrofolate synthase | - |
| D4L56_RS07660 () | 1560171..1560683 | - | 513 | WP_139518961.1 | hypothetical protein | - |
| D4L56_RS07665 () | 1560680..1563100 | - | 2421 | WP_139523775.1 | leucine--tRNA ligase | - |
| D4L56_RS07670 () | 1563110..1563448 | - | 339 | WP_000383774.1 | hypothetical protein | - |
| D4L56_RS07675 () | 1563458..1564429 | - | 972 | WP_139518963.1 | protein translocase subunit SecF | - |
| D4L56_RS07680 () | 1564438..1566015 | - | 1578 | WP_139523776.1 | protein translocase subunit SecD | - |
| D4L56_RS07685 () | 1566012..1566395 | - | 384 | WP_000529767.1 | preprotein translocase subunit YajC | - |
| D4L56_RS07690 () | 1566443..1567759 | - | 1317 | WP_139518965.1 | sodium/proton antiporter NhaA | - |
| D4L56_RS07695 () | 1567783..1570620 | - | 2838 | WP_139518966.1 | RecB-like helicase | - |
| D4L56_RS07700 () | 1570869..1571663 | + | 795 | WP_000258276.1 | 30S ribosomal protein S2 | - |
| D4L56_RS07705 () | 1571663..1572730 | + | 1068 | WP_139523777.1 | elongation factor Ts | - |
| D4L56_RS07710 () | 1572880..1573611 | - | 732 | WP_139518968.1 | type II restriction endonuclease | - |
| D4L56_RS07715 () | 1573604..1574500 | - | 897 | WP_139518969.1 | SAM-dependent methyltransferase | - |
| D4L56_RS07720 () | 1574513..1574716 | - | 204 | WP_162982575.1 | hypothetical protein | - |
| D4L56_RS07725 () | 1574716..1575588 | - | 873 | WP_139518970.1 | class 1 fructose-bisphosphatase | - |
| D4L56_RS07730 () | 1575659..1576312 | + | 654 | WP_139518971.1 | Ribulose-phosphate 3-epimerase | VF |
| D4L56_RS07735 () | 1576290..1577153 | + | 864 | WP_139518972.1 | 3'-5' exonuclease | - |
| D4L56_RS07740 () | 1577399..1577755 | - | 357 | WP_000963134.1 | hypothetical protein | - |
| D4L56_RS07745 () | 1577885..1578181 | - | 297 | WP_078260935.1 | hypothetical protein | - |
| D4L56_RS07750 () | 1578200..1579507 | - | 1308 | WP_139518973.1 | putative protein YloA | VF |
| D4L56_RS07755 () | 1579504..1581078 | - | 1575 | WP_139518974.1 | DNA repair protein RecN | - |
| D4L56_RS07760 () | 1581093..1581947 | - | 855 | WP_139518975.1 | NAD(+)/NADH kinase | - |
| D4L56_RS07765 () | 1582133..1582861 | + | 729 | WP_139518976.1 | hypothetical protein | VF |
| D4L56_RS07770 () | 1582872..1584623 | - | 1752 | WP_139518977.1 | DUF262 domain-containing HNH endonuclease family protein | - |
| D4L56_RS07775 () | 1584742..1585884 | - | 1143 | WP_139518978.1 | alanine dehydrogenase | - |
| D4L56_RS07780 () | 1586088..1587056 | + | 969 | WP_139523778.1 | arginase | - |
| D4L56_RS07785 () | 1587404..1589929 | + | 2526 | WP_180339202.1 | TonB-dependent receptor family protein | - |
| D4L56_RS07790 () | 1590019..1590726 | - | 708 | WP_139518981.1 | M48 family metallopeptidase | - |
| D4L56_RS07795 () | 1590726..1592486 | - | 1761 | WP_139518982.1 | type I restriction endonuclease subunit R | - |
| D4L56_RS07805 () | 1592672..1592923 | + | 252 | WP_139518983.1 | hypothetical protein | - |
| D4L56_RS07810 () | 1592974..1593375 | + | 402 | WP_000420189.1 | hypothetical protein | - |
| D4L56_RS07815 () | 1593388..1595448 | + | 2061 | WP_139518984.1 | type IA DNA topoisomerase | - |
| D4L56_RS07820 () | 1595503..1595973 | + | 471 | WP_000965788.1 | hypothetical protein | - |
| D4L56_RS07825 () | 1595943..1596741 | + | 799 | Protein_1472 | nucleotidyl transferase AbiEii/AbiGii toxin family protein | - |
| D4L56_RS07830 () | 1596815..1597336 | - | 522 | WP_139518985.1 | hypothetical protein | - |
| D4L56_RS07835 () | 1597465..1597842 | - | 378 | WP_120963166.1 | hypothetical protein | - |
| D4L56_RS07840 () | 1597949..1598557 | - | 609 | WP_139518986.1 | ParA family protein | - |
| D4L56_RS08110 () | 1599194..1599358 | + | 165 | WP_000189763.1 | hypothetical protein | - |
| D4L56_RS07850 () | 1599359..1599859 | + | 501 | WP_139518988.1 | DUF1738 domain-containing protein | - |
| D4L56_RS07855 () | 1600181..1600411 | + | 231 | WP_139519046.1 | hypothetical protein | - |
| D4L56_RS07860 () | 1600411..1602339 | + | 1929 | Protein_1479 | hypothetical protein | - |
| D4L56_RS07865 () | 1602349..1603782 | + | 1434 | WP_139518989.1 | hypothetical protein | - |
| D4L56_RS07870 () | 1603779..1605041 | + | 1263 | Protein_1481 | P-type conjugative transfer protein TrbL | - |
| D4L56_RS07875 () | 1605038..1606315 | + | 1278 | WP_139518990.1 | hypothetical protein | - |
| D4L56_RS07880 () | 1606320..1606949 | - | 630 | WP_139519047.1 | hypothetical protein | - |
| D4L56_RS07885 () | 1607055..1607338 | - | 284 | Protein_1484 | hypothetical protein | - |
| D4L56_RS07890 () | 1607559..1608038 | + | 480 | WP_139518991.1 | CAAX protease | - |
| D4L56_RS07900 () | 1608398..1608649 | + | 252 | WP_139518992.1 | hypothetical protein | - |
| D4L56_RS07905 () | 1608621..1609424 | + | 804 | WP_000009099.1 | nucleotidyl transferase AbiEii/AbiGii toxin family protein | - |
| D4L56_RS07910 () | 1609558..1610634 | + | 1077 | WP_139518993.1 | Tyrosine recombinase XerH ; Integrase | Integrase |
| D4L56_RS07915 () | 1610697..1611899 | - | 1203 | WP_139518994.1 | hypothetical protein | - |
| D4L56_RS07920 () | 1611899..1613272 | - | 1374 | WP_139518995.1 | hypothetical protein | - |
| D4L56_RS07925 () | 1613276..1615489 | - | 2214 | WP_139518996.1 | competence protein | - |
| D4L56_RS07930 () | 1615532..1616926 | - | 1395 | WP_139518997.1 | hypothetical protein | - |
| D4L56_RS07935 () | 1616927..1617964 | - | 1038 | WP_139518998.1 | hypothetical protein | - |
| D4L56_RS07940 () | 1618118..1626544 | + | 8427 | WP_139523780.1 | DEAD/DEAH box helicase family protein | - |
| D4L56_RS07945 () | 1626811..1627467 | + | 657 | WP_000587377.1 | ParA family protein | - |
| D4L56_RS07950 () | 1627548..1627832 | + | 285 | WP_079296630.1 | hypothetical protein | - |
| D4L56_RS07955 () | 1627876..1629060 | + | 1185 | WP_139519000.1 | hypothetical protein | - |
| D4L56_RS07960 () | 1629085..1630995 | - | 1911 | WP_139519001.1 | relaxase/mobilization nuclease domain-containing protein | - |
| D4L56_RS07965 () | 1631289..1631603 | + | 315 | WP_139519002.1 | hypothetical protein | Antitoxin Detail |
| D4L56_RS07970 () | 1631596..1631877 | + | 282 | WP_000921926.1 | type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family | Toxin Detail |
| D4L56_RS07975 () | 1632152..1633879 | - | 1728 | WP_180339203.1 | Protein VirD4 | VF |
| D4L56_RS07980 () | 1633880..1634437 | - | 558 | WP_139519003.1 | hypothetical protein | - |
| D4L56_RS07985 () | 1634604..1635230 | - | 627 | WP_000451922.1 | FAD-dependent thymidylate synthase | - |
| D4L56_RS07990 () | 1635252..1637045 | - | 1794 | WP_139519004.1 | glutamine--fructose-6-phosphate transaminase (isomerizing) | - |
| D4L56_RS07995 () | 1637046..1637285 | - | 240 | WP_000461845.1 | DUF2443 domain-containing protein | - |
| D4L56_RS08000 () | 1637328..1637870 | - | 543 | WP_139519049.1 | purine-nucleoside phosphorylase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|