MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 80090 bp
Accession: NZ_CP031505 Location: 595074..675163 Organism: Dickeya fangzhongdai strain LN1 Replicon: chromosome
Accession: NZ_CP031505 Location: 595074..675163 Organism: Dickeya fangzhongdai strain LN1 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DYD82_RS02780 () | 590404..591156 | + | 753 | WP_145958395.1 | hypothetical protein | - |
| DYD82_RS02785 () | 591196..591993 | + | 798 | WP_145958396.1 | hypothetical protein | - |
| DYD82_RS02790 () | 592565..592681 | + | 117 | Protein_535 | transposase | - |
| DYD82_RS02795 () | 592900..593922 | - | 1023 | WP_100848778.1 | IS110 family transposase | - |
| DYD82_RS02800 () | 593989..594983 | + | 995 | Protein_537 | IS3 family transposase | - |
| DYD82_RS02805 () | 595175..596080 | + | 906 | WP_100848828.1 | Lon protease | VF |
| DYD82_RS02810 () | 596154..596585 | - | 432 | WP_100848829.1 | hypothetical protein | - |
| DYD82_RS02815 () | 596813..597214 | + | 402 | WP_024109625.1 | hypothetical protein | - |
| DYD82_RS02820 () | 597207..598589 | + | 1383 | WP_100848830.1 | replicative DNA helicase | - |
| DYD82_RS02825 () | 598586..600334 | + | 1749 | WP_100848831.1 | ParB family protein | - |
| DYD82_RS02830 () | 600339..600611 | + | 273 | WP_145958397.1 | hypothetical protein | - |
| DYD82_RS02835 () | 600614..601225 | + | 612 | WP_024109629.1 | DUF2857 domain-containing protein | - |
| DYD82_RS02840 () | 601246..601497 | + | 252 | WP_100848833.1 | hypothetical protein | - |
| DYD82_RS02845 () | 601506..601688 | + | 183 | WP_100848834.1 | hypothetical protein | - |
| DYD82_RS02850 () | 601812..603032 | + | 1221 | WP_100848835.1 | helix-turn-helix domain-containing protein | - |
| DYD82_RS02855 () | 603300..604079 | + | 780 | WP_100848836.1 | TIGR03761 family integrating conjugative element protein | - |
| DYD82_RS02860 () | 604081..606087 | + | 2007 | WP_100848837.1 | DNA topoisomerase III | - |
| DYD82_RS02865 () | 606722..607210 | + | 489 | WP_100850393.1 | DUF3577 domain-containing protein | - |
| DYD82_RS02870 () | 607270..607818 | + | 549 | WP_024109635.1 | single-stranded DNA-binding protein | - |
| DYD82_RS02875 () | 607916..608440 | + | 525 | WP_145958398.1 | hypothetical protein | - |
| DYD82_RS02880 () | 608910..609341 | + | 432 | WP_024108354.1 | DUF29 domain-containing protein | - |
| DYD82_RS02885 () | 609482..610726 | + | 1245 | WP_100848838.1 | Homoserine kinase | VF |
| DYD82_RS02890 () | 610728..611171 | + | 444 | WP_100848839.1 | hypothetical protein | VF |
| DYD82_RS02895 () | 611191..612864 | + | 1674 | WP_100848840.1 | hypothetical protein | VF |
| DYD82_RS02900 () | 612867..614147 | + | 1281 | WP_100848841.1 | hypothetical protein | VF |
| DYD82_RS02905 () | 614134..614631 | + | 498 | WP_100848842.1 | hypothetical protein | VF |
| DYD82_RS02910 () | 614641..616215 | + | 1575 | WP_100848843.1 | Transaldolase | VF |
| DYD82_RS02915 () | 616205..617320 | + | 1116 | WP_100848844.1 | hypothetical protein | VF |
| DYD82_RS02920 () | 617330..617926 | + | 597 | WP_100848845.1 | hypothetical protein | VF |
| DYD82_RS02925 () | 617931..618410 | + | 480 | WP_100848846.1 | hypothetical protein | VF |
| DYD82_RS02930 () | 618407..619075 | + | 669 | WP_100848847.1 | hypothetical protein | VF |
| DYD82_RS02935 () | 619081..620325 | + | 1245 | WP_100850394.1 | Chaperone protein DnaK | VF |
| DYD82_RS02940 () | 620947..621765 | + | 819 | WP_145958399.1 | helix-turn-helix domain-containing protein | - |
| DYD82_RS02945 () | 621884..623092 | + | 1209 | WP_100848849.1 | conjugal transfer protein TraF | - |
| DYD82_RS02950 () | 623172..623576 | + | 405 | WP_100848850.1 | plasmid protein | - |
| DYD82_RS02955 () | 623799..624740 | + | 942 | WP_145958400.1 | hypothetical protein | - |
| DYD82_RS02960 () | 624751..625467 | + | 717 | WP_100848852.1 | TIGR03759 family integrating conjugative element protein | - |
| DYD82_RS02965 () | 625467..626048 | + | 582 | WP_100850395.1 | HTH-type transcriptional regulator HdfR | VF |
| DYD82_RS02970 () | 626045..626557 | + | 513 | WP_100848853.1 | integrating conjugative element protein | - |
| DYD82_RS02975 () | 626599..627144 | + | 546 | WP_100848854.1 | restriction endonuclease | - |
| DYD82_RS02980 () | 627141..629240 | + | 2100 | WP_100848855.1 | type IV conjugative transfer system coupling protein TraD | - |
| DYD82_RS02985 () | 629224..629982 | + | 759 | WP_100850396.1 | TIGR03747 family integrating conjugative element membrane protein | - |
| DYD82_RS02990 () | 630062..631066 | + | 1005 | WP_100848856.1 | IS110 family transposase ISEch4 | Transposase |
| DYD82_RS02995 () | 631386..632813 | - | 1428 | WP_100848857.1 | hypothetical protein | - |
| DYD82_RS03000 () | 633392..633715 | + | 324 | WP_100848858.1 | hypothetical protein | - |
| DYD82_RS03005 () | 633715..633957 | + | 243 | WP_024109762.1 | TIGR03758 family integrating conjugative element protein | - |
| DYD82_RS03010 () | 633991..634338 | + | 348 | WP_100848859.1 | TIGR03745 family integrating conjugative element membrane protein | - |
| DYD82_RS03015 () | 634347..634715 | + | 369 | WP_100848860.1 | TIGR03750 family conjugal transfer protein | - |
| DYD82_RS03020 () | 634712..635368 | + | 657 | WP_100848861.1 | TIGR03746 family integrating conjugative element protein | - |
| DYD82_RS03025 () | 635410..636291 | + | 882 | WP_100848862.1 | TIGR03749 family integrating conjugative element protein | - |
| DYD82_RS03030 () | 636281..637822 | + | 1542 | WP_100848863.1 | TIGR03752 family integrating conjugative element protein | - |
| DYD82_RS03035 () | 637837..638241 | + | 405 | WP_100850397.1 | TIGR03751 family conjugal transfer lipoprotein | - |
| DYD82_RS03040 () | 638241..641087 | + | 2847 | WP_100848864.1 | conjugative transfer ATPase | - |
| DYD82_RS03045 () | 641084..641464 | + | 381 | Protein_586 | acetyltransferase | - |
| DYD82_RS03050 () | 641774..641944 | + | 171 | WP_167389536.1 | hypothetical protein | - |
| DYD82_RS03055 () | 641993..643225 | - | 1233 | WP_145958401.1 | hypothetical protein | - |
| DYD82_RS03060 () | 643429..643839 | + | 411 | WP_100848867.1 | TIGR03757 family integrating conjugative element protein | - |
| DYD82_RS03065 () | 643836..644807 | + | 972 | WP_100848868.1 | TIGR03756 family integrating conjugative element protein | - |
| DYD82_RS03070 () | 644819..646240 | + | 1422 | WP_100850398.1 | integrating conjugative element protein | - |
| DYD82_RS03075 () | 646252..646629 | + | 378 | WP_100848869.1 | hypothetical protein | - |
| DYD82_RS03080 () | 646626..648170 | + | 1545 | WP_024109779.1 | conjugal transfer protein TraG N-terminal domain-containing protein | - |
| DYD82_RS03085 () | 648207..648671 | - | 465 | WP_100848870.1 | hypothetical protein | - |
| DYD82_RS03090 () | 648872..649102 | + | 231 | WP_024109781.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | Antitoxin Detail |
| DYD82_RS03095 () | 649099..649515 | + | 417 | WP_100848871.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| DYD82_RS03100 () | 649852..650112 | + | 261 | WP_145958402.1 | hypothetical protein | - |
| DYD82_RS03105 () | 650425..650853 | + | 429 | WP_145958438.1 | DUF2726 domain-containing protein | - |
| DYD82_RS03110 () | 651916..652830 | + | 915 | WP_100848873.1 | Bis(5'-nucleosyl)-tetraphosphatase, symmetrical ; Integrase | Integrase |
| DYD82_RS03115 () | 653615..653884 | + | 270 | WP_145958403.1 | hypothetical protein | - |
| DYD82_RS03120 () | 653965..654297 | + | 333 | WP_100848875.1 | hypothetical protein | - |
| DYD82_RS03125 () | 654311..654544 | + | 234 | WP_024109656.1 | hypothetical protein | - |
| DYD82_RS03130 () | 654625..654948 | + | 324 | WP_145958404.1 | hypothetical protein | - |
| DYD82_RS03135 () | 655069..655689 | + | 621 | WP_100848876.1 | hypothetical protein | - |
| DYD82_RS03140 () | 655705..656184 | + | 480 | WP_167389537.1 | DNA repair protein RadC | - |
| DYD82_RS03145 () | 656281..656568 | + | 288 | WP_100848877.1 | TA system toxin CbtA family protein | - |
| DYD82_RS03150 () | 656661..657581 | + | 921 | WP_100848878.1 | DUF1281 domain-containing protein | - |
| DYD82_RS03155 () | 658009..658692 | + | 684 | WP_100848880.1 | type I restriction-modification system subunit M | - |
| DYD82_RS03160 () | 658992..660467 | + | 1476 | WP_100848881.1 | ATP-binding protein | - |
| DYD82_RS03165 () | 660558..661589 | - | 1032 | WP_100848882.1 | DUF4238 domain-containing protein | - |
| DYD82_RS03170 () | 661977..662801 | - | 825 | WP_100848883.1 | hypothetical protein | - |
| DYD82_RS03175 () | 662999..663934 | - | 936 | WP_100848884.1 | hypothetical protein | - |
| DYD82_RS03180 () | 664624..665562 | + | 939 | WP_100848885.1 | hypothetical protein | - |
| DYD82_RS03185 () | 665650..666132 | + | 483 | WP_100848886.1 | hypothetical protein | - |
| DYD82_RS03190 () | 666142..668145 | + | 2004 | WP_100848887.1 | AAA family ATPase | - |
| DYD82_RS03195 () | 668356..668550 | + | 195 | WP_100848888.1 | hypothetical protein | - |
| DYD82_RS03200 () | 668727..668996 | + | 270 | WP_145958405.1 | hypothetical protein | - |
| DYD82_RS03205 () | 669204..670313 | - | 1110 | WP_100848890.1 | DUF4935 domain-containing protein | - |
| DYD82_RS03210 () | 670654..672156 | + | 1503 | WP_100848891.1 | UvrD-helicase domain-containing protein | - |
| DYD82_RS03215 () | 672240..673835 | + | 1596 | WP_100848892.1 | TraI domain-containing protein | - |
| DYD82_RS03220 () | 673928..674950 | + | 1023 | WP_100848893.1 | 3-isopropylmalate dehydrogenase ; Integrase | Integrase |
| DYD82_RS03230 () | 675385..675960 | - | 576 | WP_038917759.1 | transcriptional regulator | - |
| DYD82_RS03235 () | 676055..677785 | - | 1731 | WP_100848894.1 | protein-disulfide reductase DsbD | - |
| DYD82_RS03240 () | 677761..678141 | - | 381 | WP_071605148.1 | divalent cation tolerance protein CutA | - |
| DYD82_RS03245 () | 678256..679557 | - | 1302 | WP_038917762.1 | anaerobic C4-dicarboxylate transporter | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|