MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 89029 bp
Accession: NZ_CP030913 Location: 5492151..5581179 Organism: Pseudomonas aeruginosa strain Y89 Replicon: chromosome
Accession: NZ_CP030913 Location: 5492151..5581179 Organism: Pseudomonas aeruginosa strain Y89 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| Y89_RS26260 () | 5487849..5491922 | + | 4074 | WP_023082028.1 | two-partner secretion system exoprotein TpsA4 | - |
| Y89_RS26265 () | 5492292..5493158 | + | 867 | WP_023108753.1 | ParA family protein | - |
| Y89_RS26270 () | 5493160..5493888 | + | 729 | WP_115747652.1 | hypothetical protein | - |
| Y89_RS26275 () | 5493885..5494382 | + | 498 | WP_115747653.1 | hypothetical protein | - |
| Y89_RS26280 () | 5494388..5494840 | + | 453 | Protein_5085 | hypothetical protein | - |
| Y89_RS26285 () | 5494901..5495530 | + | 630 | WP_044060901.1 | hypothetical protein | - |
| Y89_RS26290 () | 5495530..5496231 | + | 702 | WP_023082648.1 | DUF2786 domain-containing protein | - |
| Y89_RS26295 () | 5496228..5496935 | + | 708 | WP_023082649.1 | HNH endonuclease | - |
| Y89_RS26300 () | 5496919..5497143 | + | 225 | WP_009315888.1 | hypothetical protein | - |
| Y89_RS26305 () | 5497140..5498483 | + | 1344 | WP_023082650.1 | replicative DNA helicase | - |
| Y89_RS33540 () | 5498922..5499368 | - | 447 | WP_003117028.1 | hypothetical protein | - |
| Y89_RS33545 () | 5499552..5500511 | + | 960 | WP_023082651.1 | hypothetical protein | - |
| Y89_RS26320 () | 5500918..5501103 | + | 186 | WP_003157042.1 | hypothetical protein | - |
| Y89_RS26325 () | 5501093..5501620 | + | 528 | WP_003448815.1 | hypothetical protein | - |
| Y89_RS26330 () | 5501617..5501874 | + | 258 | WP_003448812.1 | hypothetical protein | - |
| Y89_RS33550 () | 5501867..5502106 | + | 240 | WP_023082652.1 | hypothetical protein | - |
| Y89_RS26335 () | 5502099..5502332 | + | 234 | WP_003103841.1 | hypothetical protein | - |
| Y89_RS26340 () | 5502332..5503354 | + | 1023 | WP_010792224.1 | nucleoid-associated protein YejK | - |
| Y89_RS26345 () | 5503351..5504241 | + | 891 | WP_003119279.1 | DNA adenine methylase | - |
| Y89_RS26350 () | 5504262..5504531 | + | 270 | WP_003448782.1 | Arc family DNA-binding protein | - |
| Y89_RS26355 () | 5504528..5506261 | + | 1734 | WP_058181431.1 | ParB family protein | - |
| Y89_RS26360 () | 5506289..5507056 | + | 768 | WP_019726827.1 | DUF2857 domain-containing protein | - |
| Y89_RS26365 () | 5507053..5508378 | + | 1326 | WP_033995553.1 | hypothetical protein | - |
| Y89_RS33555 () | 5508375..5509964 | + | 1590 | WP_162830896.1 | hypothetical protein | - |
| Y89_RS26375 () | 5509957..5510685 | + | 729 | WP_074227510.1 | TIGR03761 family integrating conjugative element protein | - |
| Y89_RS26380 () | 5510691..5511239 | + | 549 | WP_003120974.1 | DUF3158 family protein | - |
| Y89_RS26385 () | 5511287..5512117 | + | 831 | WP_012076855.1 | phage regulatory protein | - |
| Y89_RS26390 () | 5512147..5512635 | + | 489 | WP_012076856.1 | single-stranded DNA-binding protein | - |
| Y89_RS26395 () | 5512785..5513096 | + | 312 | WP_003461002.1 | helix-turn-helix domain-containing protein | - |
| Y89_RS33795 () | 5513047..5513370 | + | 324 | WP_170869300.1 | CrpP family protein | - |
| Y89_RS26405 () | 5513486..5515405 | + | 1920 | WP_115747655.1 | type I DNA topoisomerase | - |
| Y89_RS26410 () | 5515414..5516166 | + | 753 | WP_003120982.1 | hypothetical protein | - |
| Y89_RS26415 () | 5516278..5518167 | + | 1890 | WP_003448700.1 | hypothetical protein | - |
| Y89_RS26420 () | 5518164..5520140 | + | 1977 | WP_115747656.1 | DEAD/DEAH box helicase | - |
| Y89_RS26425 () | 5520281..5520625 | + | 345 | WP_003448665.1 | hypothetical protein | - |
| Y89_RS26430 () | 5520696..5520986 | - | 291 | WP_003448662.1 | putative addiction module antidote protein | Antitoxin Detail |
| Y89_RS26435 () | 5520983..5521282 | - | 300 | WP_003120987.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| Y89_RS26440 () | 5521483..5522607 | + | 1125 | WP_023435880.1 | hypothetical protein | VF |
| Y89_RS26445 () | 5522607..5524316 | + | 1710 | WP_115747657.1 | Outer membrane lipoprotein BfpB | VF |
| Y89_RS26450 () | 5524320..5525645 | + | 1326 | WP_003120992.1 | type 4b pilus protein PilO2 | - |
| Y89_RS26455 () | 5525635..5526168 | + | 534 | WP_003120993.1 | type IV pilus biogenesis protein PilP | - |
| Y89_RS26460 () | 5526177..5527757 | + | 1581 | WP_003120994.1 | Toxin coregulated pilus biosynthesis protein T | VF |
| Y89_RS26465 () | 5527757..5528836 | + | 1080 | WP_003123335.1 | Toxin coregulated pilus biosynthesis protein E | VF |
| Y89_RS26470 () | 5528858..5529388 | + | 531 | WP_003120996.1 | pilus assembly protein PilX | - |
| Y89_RS26475 () | 5529385..5530341 | + | 957 | WP_003448639.1 | Twitching mobility protein | VF |
| Y89_RS26480 () | 5530334..5531713 | + | 1380 | WP_003099769.1 | hypothetical protein | VF |
| Y89_RS26485 () | 5531731..5532168 | + | 438 | WP_003120998.1 | hypothetical protein | VF |
| Y89_RS26495 () | 5533090..5533656 | + | 567 | WP_003120999.1 | hypothetical protein | - |
| Y89_RS26500 () | 5533733..5533912 | + | 180 | WP_004347955.1 | hypothetical protein | - |
| Y89_RS26505 () | 5534371..5534859 | + | 489 | WP_003448595.1 | DUF3577 domain-containing protein | - |
| Y89_RS33800 () | 5534997..5535155 | + | 159 | WP_003121002.1 | hypothetical protein | - |
| Y89_RS26510 () | 5535229..5535426 | + | 198 | WP_003448593.1 | hypothetical protein | - |
| Y89_RS26515 () | 5535618..5536331 | + | 714 | WP_003121003.1 | hypothetical protein | - |
| Y89_RS26520 () | 5536567..5536917 | + | 351 | WP_003099791.1 | hypothetical protein | - |
| Y89_RS26525 () | 5536974..5537606 | + | 633 | WP_003099792.1 | DUF3275 family protein | - |
| Y89_RS26530 () | 5537603..5537878 | + | 276 | WP_003099794.1 | hypothetical protein | - |
| Y89_RS26535 () | 5537948..5538310 | + | 363 | WP_003099795.1 | hypothetical protein | - |
| Y89_RS26540 () | 5538378..5538638 | + | 261 | WP_003099797.1 | hypothetical protein | - |
| Y89_RS26545 () | 5538731..5539336 | + | 606 | WP_003099799.1 | hypothetical protein | - |
| Y89_RS26550 () | 5539366..5540727 | + | 1362 | WP_115747658.1 | class I SAM-dependent methyltransferase | - |
| Y89_RS26555 () | 5540832..5543081 | + | 2250 | WP_029771374.1 | DEAD/DEAH box helicase | - |
| Y89_RS33560 () | 5543240..5543551 | + | 312 | WP_124014672.1 | FxLYD domain-containing protein | - |
| Y89_RS26560 () | 5543666..5544199 | - | 534 | WP_124014673.1 | hypothetical protein | - |
| Y89_RS26565 () | 5544272..5545531 | - | 1260 | WP_023093866.1 | S1 family peptidase | - |
| Y89_RS26570 () | 5545973..5546611 | + | 639 | WP_063879068.1 | hypothetical protein | - |
| Y89_RS26575 () | 5546622..5547377 | + | 756 | WP_025297849.1 | TIGR03759 family integrating conjugative element protein | - |
| Y89_RS26580 () | 5547362..5547943 | + | 582 | WP_003121011.1 | hypothetical protein | VF |
| Y89_RS26585 () | 5547940..5548440 | + | 501 | WP_003121012.1 | integrating conjugative element protein | - |
| Y89_RS26590 () | 5548449..5548718 | + | 270 | WP_023082675.1 | hypothetical protein | - |
| Y89_RS26595 () | 5548722..5550953 | + | 2232 | WP_023082676.1 | type IV conjugative transfer system coupling protein TraD | - |
| Y89_RS26600 () | 5550953..5551699 | + | 747 | WP_009316301.1 | TIGR03747 family integrating conjugative element membrane protein | - |
| Y89_RS26605 () | 5551717..5552208 | + | 492 | WP_115747659.1 | hypothetical protein | - |
| Y89_RS26610 () | 5552449..5553930 | + | 1482 | WP_012076865.1 | UvrD-helicase domain-containing protein | - |
| Y89_RS33565 () | 5554061..5555170 | + | 1110 | WP_012076866.1 | hypothetical protein | - |
| Y89_RS26620 () | 5555215..5555526 | - | 312 | WP_003117074.1 | DUF2845 domain-containing protein | - |
| Y89_RS26625 () | 5555699..5555998 | + | 300 | WP_003109393.1 | hypothetical protein | - |
| Y89_RS26630 () | 5556092..5556430 | + | 339 | WP_012076868.1 | RAQPRD family integrative conjugative element protein | - |
| Y89_RS26635 () | 5556427..5556666 | + | 240 | WP_012076869.1 | TIGR03758 family integrating conjugative element protein | - |
| Y89_RS26640 () | 5556684..5557040 | + | 357 | WP_012076870.1 | TIGR03745 family integrating conjugative element membrane protein | - |
| Y89_RS26645 () | 5557051..5557437 | + | 387 | WP_012076871.1 | TIGR03750 family conjugal transfer protein | - |
| Y89_RS26650 () | 5557434..5558093 | + | 660 | WP_003156959.1 | TIGR03746 family integrating conjugative element protein | - |
| Y89_RS26655 () | 5558090..5558974 | + | 885 | WP_012076872.1 | TIGR03749 family integrating conjugative element protein | - |
| Y89_RS26660 () | 5558958..5560463 | + | 1506 | WP_012076873.1 | TIGR03752 family integrating conjugative element protein | - |
| Y89_RS26665 () | 5560441..5560884 | + | 444 | WP_012076874.1 | TIGR03751 family conjugal transfer lipoprotein | - |
| Y89_RS26670 () | 5561031..5563835 | + | 2805 | WP_025297860.1 | conjugative transfer ATPase | - |
| Y89_RS26675 () | 5563832..5564116 | + | 285 | WP_003086159.1 | hypothetical protein | - |
| Y89_RS26680 () | 5564113..5564775 | + | 663 | WP_023082678.1 | DsbA family protein | - |
| Y89_RS33570 () | 5564821..5565663 | - | 843 | WP_023082679.1 | hypothetical protein | - |
| Y89_RS26685 () | 5565748..5566117 | + | 370 | Protein_5169 | thioredoxin domain-containing protein | - |
| Y89_RS26690 () | 5566114..5566332 | - | 219 | WP_023082680.1 | hypothetical protein | - |
| Y89_RS26695 () | 5566541..5566972 | + | 432 | WP_025297859.1 | TIGR03757 family integrating conjugative element protein | - |
| Y89_RS26700 () | 5566972..5567910 | + | 939 | WP_012076879.1 | TIGR03756 family integrating conjugative element protein | - |
| Y89_RS26705 () | 5567928..5569310 | + | 1383 | WP_050413521.1 | integrating conjugative element protein | - |
| Y89_RS26710 () | 5569310..5569657 | + | 348 | WP_003111733.1 | hypothetical protein | - |
| Y89_RS26715 () | 5569654..5571186 | + | 1533 | WP_115747660.1 | conjugal transfer protein TraG N-terminal domain-containing protein | - |
| Y89_RS26720 () | 5571231..5571587 | - | 357 | WP_003111731.1 | hypothetical protein | - |
| Y89_RS26725 () | 5571706..5571978 | + | 273 | WP_003111730.1 | type II toxin-antitoxin system ParD family antitoxin | - |
| Y89_RS26730 () | 5571982..5572341 | + | 360 | WP_025297855.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| Y89_RS26735 () | 5572351..5573268 | - | 918 | WP_023082681.1 | hypothetical protein | - |
| Y89_RS26740 () | 5573294..5573533 | - | 240 | WP_023082682.1 | hypothetical protein | - |
| Y89_RS26745 () | 5573969..5574361 | + | 393 | WP_079280456.1 | IS66 family transposase ISSal1 | Transposase |
| Y89_RS26750 () | 5574358..5574693 | + | 336 | WP_023105888.1 | IS66 family transposase ISPpu30 | Transposase |
| Y89_RS26755 () | 5574757..5576268 | + | 1512 | WP_023105887.1 | IS66 family transposase ISPsy43 | Transposase |
| Y89_RS26760 () | 5576286..5577415 | + | 1130 | Protein_5184 | IS256 family transposase ISRso7 | Transposase |
| Y89_RS26765 () | 5577575..5579497 | + | 1923 | WP_022580137.1 | helicase/relaxase domain-containing protein | - |
| Y89_RS26770 () | 5579494..5580795 | + | 1302 | WP_003454526.1 | Tyrosine recombinase XerD ; Integrase | Integrase |
| Y89_RS26790 () | 5581614..5584178 | - | 2565 | WP_003094682.1 | ATP-dependent chaperone ClpB | - |
| Y89_RS26795 () | 5584334..5585062 | - | 729 | WP_003119426.1 | peptidoglycan editing factor PgeF | - |
| Y89_RS26800 () | 5585059..5586021 | - | 963 | WP_003094686.1 | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|