MGE detailed information
MGE type: IScluster/Tn MGE length: 15844 bp
Accession: NZ_CP030164 Location: 2328337..2344180 Organism: Xanthomonas citri pv. punicae strain LMG7439 Replicon: chromosome
Accession: NZ_CP030164 Location: 2328337..2344180 Organism: Xanthomonas citri pv. punicae strain LMG7439 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| XapA_RS10325 () | 2323710..2324702 | + | 993 | WP_005915721.1 | mechanosensitive ion channel family protein | - |
| XapA_RS10330 () | 2325083..2328271 | + | 3189 | WP_174854877.1 | TAL effector repeat-containing protein | - |
| XapA_RS10335 () | 2328382..2328765 | - | 384 | Protein_1930 | Tn3 family transposase ISPsy42 | Transposase |
| XapA_RS10345 () | 2328956..2329216 | + | 261 | WP_005917852.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | Antitoxin Detail |
| XapA_RS10350 () | 2329213..2329614 | + | 402 | WP_011053002.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| XapA_RS10355 () | 2329639..2329902 | + | 264 | WP_005917846.1 | hypothetical protein | - |
| XapA_RS10360 () | 2329909..2330139 | + | 231 | Protein_1934 | zeta toxin family protein | - |
| XapA_RS10365 () | 2330163..2331539 | - | 1377 | WP_160964032.1 | IS5 family transposase ISXo4 | Transposase |
| XapA_RS10370 () | 2331657..2332805 | + | 1149 | Protein_1936 | Type IV secretion system protein PtlC | VF |
| XapA_RS10375 () | 2332802..2333470 | + | 669 | WP_005934603.1 | hypothetical protein | - |
| XapA_RS10380 () | 2333518..2333730 | + | 213 | WP_005934599.1 | hypothetical protein | - |
| XapA_RS10385 () | 2333723..2333911 | + | 189 | Protein_1939 | hypothetical protein | - |
| XapA_RS10390 () | 2333929..2334891 | - | 963 | WP_160964030.1 | IS1595 family transposase ISXo16 | Transposase |
| XapA_RS10395 () | 2334983..2335192 | + | 210 | Protein_1941 | hypothetical protein | - |
| XapA_RS10400 () | 2335194..2336054 | + | 861 | WP_005934744.1 | type IV secretion system protein | - |
| XapA_RS10405 () | 2336051..2336569 | + | 519 | Protein_1943 | type IV secretion system protein | - |
| XapA_RS10410 () | 2336613..2337311 | - | 699 | WP_033836401.1 | UPF0149 family protein | - |
| XapA_RS10415 () | 2337330..2340305 | - | 2976 | WP_033836402.1 | Tn3 family transposase TnpA_ISXc4 | Transposase |
| XapA_RS10420 () | 2340310..2340729 | - | 420 | WP_005934465.1 | putative toxin-antitoxin system toxin component, PIN family | - |
| XapA_RS10425 () | 2340729..2340968 | - | 240 | WP_005934467.1 | ribbon-helix-helix domain-containing protein | - |
| XapA_RS10430 () | 2341176..2342099 | + | 924 | WP_005934469.1 | Tn3 family transposase TnpR_ISXc4 | Transposase |
| XapA_RS10435 () | 2342165..2342413 | + | 249 | WP_005934846.1 | hypothetical protein | - |
| XapA_RS10445 () | 2342574..2342951 | - | 378 | WP_004666662.1 | hypothetical protein | - |
| XapA_RS10450 () | 2343218..2344180 | + | 963 | WP_160964030.1 | IS1595 family transposase ISXo16 | Transposase |
| XapA_RS10455 () | 2344195..2344308 | - | 114 | Protein_1952 | IS3 family transposase | - |
| XapA_RS10460 () | 2344378..2344962 | - | 585 | WP_003482835.1 | oligoribonuclease | - |
| XapA_RS10465 () | 2345034..2345549 | - | 516 | WP_033480609.1 | tRNA adenosine(34) deaminase TadA | - |
| XapA_RS10470 () | 2345546..2346013 | - | 468 | WP_003482839.1 | manganese-binding transcriptional regulator MntR | - |
| XapA_RS10475 () | 2346156..2347490 | + | 1335 | WP_005933869.1 | Nramp family divalent metal transporter | - |
| XapA_RS10480 () | 2348274..2349098 | + | 825 | WP_005933871.1 | alpha/beta hydrolase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|