MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 130609 bp
Accession: NZ_CP029681 Location: 280117..410725 Organism: Staphylococcus aureus strain AR_0473 Replicon: chromosome
Accession: NZ_CP029681 Location: 280117..410725 Organism: Staphylococcus aureus strain AR_0473 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CSC58_RS01515 () | 275421..275837 | + | 417 | WP_000688533.1 | hypothetical protein | - |
| CSC58_RS01520 () | 275914..277182 | - | 1269 | WP_000216858.1 | threonine ammonia-lyase IlvA | - |
| CSC58_RS01525 () | 277197..277769 | - | 573 | WP_000718953.1 | 3-isopropylmalate dehydratase small subunit | - |
| CSC58_RS01530 () | 277770..279139 | - | 1370 | Protein_277 | 3-isopropylmalate dehydratase large subunit | - |
| CSC58_RS01540 () | 279153..280199 | - | 1047 | WP_000221945.1 | 3-isopropylmalate dehydrogenase | - |
| CSC58_RS01545 () | 280202..281731 | - | 1530 | WP_000094580.1 | 2-isopropylmalate synthase | - |
| CSC58_RS01550 () | 281761..282780 | - | 1020 | WP_020978284.1 | ketol-acid reductoisomerase | - |
| CSC58_RS01555 () | 282902..283156 | - | 255 | WP_000196911.1 | ACT domain-containing protein | - |
| CSC58_RS01560 () | 283156..284925 | - | 1770 | WP_000047813.1 | biosynthetic-type acetolactate synthase large subunit | - |
| CSC58_RS01565 () | 284953..286641 | - | 1689 | WP_001255780.1 | dihydroxy-acid dehydratase | - |
| CSC58_RS01570 () | 286959..287114 | - | 156 | WP_001789600.1 | hypothetical protein | - |
| CSC58_RS01575 () | 287152..287613 | + | 462 | WP_000590797.1 | tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE | - |
| CSC58_RS01580 () | 287594..288256 | + | 663 | WP_001086728.1 | tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB | - |
| CSC58_RS01585 () | 288229..288693 | + | 465 | WP_000372755.1 | Ribosomal-protein-alanine acetyltransferase | VF |
| CSC58_RS01590 () | 288686..289711 | + | 1026 | WP_000159033.1 | tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD | - |
| CSC58_RS01595 () | 289813..291423 | - | 1611 | WP_000106327.1 | MutS family DNA mismatch repair protein | - |
| CSC58_RS01600 () | 291512..291640 | + | 129 | WP_001792272.1 | hypothetical protein | - |
| CSC58_RS01605 () | 291784..293712 | - | 1929 | WP_000602067.1 | ABC-F type ribosomal protection protein | - |
| CSC58_RS01610 () | 293965..294600 | + | 636 | WP_001283612.1 | redox-sensing transcriptional repressor Rex | - |
| CSC58_RS01615 () | 294904..295983 | + | 1080 | WP_000266885.1 | YeeE/YedE family protein | - |
| CSC58_RS01620 () | 296043..296267 | + | 225 | WP_000581077.1 | sulfurtransferase TusA family protein | - |
| CSC58_RS01625 () | 296475..297725 | + | 1251 | WP_001052276.1 | ammonium transporter | - |
| CSC58_RS01630 () | 297908..298858 | + | 951 | WP_000790325.1 | LacI family DNA-binding transcriptional regulator | - |
| CSC58_RS01635 () | 299007..300491 | + | 1485 | WP_000141430.1 | sucrose-6-phosphate hydrolase | - |
| CSC58_RS01640 () | 300488..301447 | + | 960 | WP_001253305.1 | carbohydrate kinase | - |
| CSC58_RS01645 () | 301635..301744 | - | 110 | Protein_299 | hypothetical protein | - |
| CSC58_RS01650 () | 301816..302532 | - | 717 | WP_000688492.1 | LytTR family DNA-binding domain-containing protein | - |
| CSC58_RS01655 () | 302551..303843 | - | 1293 | WP_001789596.1 | GHKL domain-containing protein | - |
| CSC58_RS01660 () | 303868..304008 | - | 141 | WP_001093929.1 | cyclic lactone autoinducer peptide | - |
| CSC58_RS01665 () | 304005..304574 | - | 570 | WP_001105707.1 | Accessory gene regulator protein B | VF |
| CSC58_RS01670 () | 304810..304944 | + | 135 | WP_001549197.1 | Delta-hemolysin | VF |
| CSC58_RS01675 () | 305544..306329 | - | 786 | WP_000867942.1 | carbon-nitrogen family hydrolase | - |
| CSC58_RS01680 () | 306690..307316 | - | 627 | WP_000522384.1 | nitroreductase family protein | - |
| CSC58_RS01685 () | 307513..308775 | + | 1263 | WP_110179781.1 | hypothetical protein | VF |
| CSC58_RS01690 () | 308800..309543 | - | 744 | WP_000197643.1 | CPBP family intramembrane metalloprotease | - |
| CSC58_RS01695 () | 309720..310004 | + | 285 | WP_000917289.1 | co-chaperone GroES | - |
| CSC58_RS01700 () | 310080..311696 | + | 1617 | WP_000240642.1 | 60 kDa chaperonin | VF |
| CSC58_RS01705 () | 312230..313537 | - | 1308 | WP_001045085.1 | TrkH family potassium uptake protein | - |
| CSC58_RS01710 () | 313698..314609 | + | 912 | WP_000825510.1 | Iron(3+)-hydroxamate-binding protein FhuD | VF |
| CSC58_RS01715 () | 314671..315471 | + | 801 | WP_001792916.1 | class I SAM-dependent methyltransferase | - |
| CSC58_RS01720 () | 315889..317112 | - | 1224 | WP_000206621.1 | ArgE/DapE family deacylase | - |
| CSC58_RS01725 () | 317548..318600 | + | 1053 | WP_000791419.1 | putative leukocidin-like protein 2 | VF |
| CSC58_RS01730 () | 318622..319638 | + | 1017 | WP_000595326.1 | putative leukocidin-like protein 1 | VF |
| CSC58_RS01735 () | 319876..320706 | - | 831 | Protein_317 | Phospholipase C | VF |
| CSC58_RS01740 () | 320757..321794 | - | 1038 | WP_000857198.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| CSC58_RS01745 () | 321967..322506 | - | 540 | WP_000391618.1 | type II toxin-antitoxin system PemK/MazF family toxin | - |
| CSC58_RS01750 () | 322646..322813 | - | 168 | WP_031806878.1 | hypothetical protein | - |
| CSC58_RS01755 () | 323017..323358 | - | 342 | WP_000591749.1 | hypothetical protein | - |
| CSC58_RS01760 () | 323364..324296 | - | 933 | WP_000759682.1 | ATP-dependent helicase | - |
| CSC58_RS01765 () | 324312..325025 | - | 714 | WP_001031454.1 | XRE family transcriptional regulator | - |
| CSC58_RS01770 () | 324988..325161 | + | 174 | WP_001801500.1 | hypothetical protein | - |
| CSC58_RS01775 () | 325158..325421 | + | 264 | WP_000854072.1 | helix-turn-helix domain-containing protein | - |
| CSC58_RS01780 () | 325437..325634 | + | 198 | WP_001148862.1 | hypothetical protein | - |
| CSC58_RS01785 () | 325621..326001 | - | 381 | WP_000762521.1 | DUF2513 domain-containing protein | - |
| CSC58_RS01790 () | 326056..326379 | + | 324 | WP_001120201.1 | DUF771 domain-containing protein | - |
| CSC58_RS01795 () | 326376..326537 | + | 162 | WP_000048132.1 | DUF1270 family protein | - |
| CSC58_RS01800 () | 326632..326934 | + | 303 | WP_000165371.1 | DUF2482 family protein | - |
| CSC58_RS01805 () | 326939..327199 | + | 261 | WP_000291510.1 | DUF1108 family protein | - |
| CSC58_RS01810 () | 327208..327471 | + | 264 | WP_001205732.1 | hypothetical protein | - |
| CSC58_RS01815 () | 327480..329423 | + | 1944 | WP_000700555.1 | AAA family ATPase | - |
| CSC58_RS01820 () | 329425..330345 | + | 921 | WP_000138475.1 | recombinase RecT | - |
| CSC58_RS01825 () | 330426..331043 | + | 618 | WP_071665632.1 | MBL fold metallo-hydrolase | - |
| CSC58_RS01830 () | 331044..331514 | + | 471 | WP_000934760.1 | single-stranded DNA-binding protein | - |
| CSC58_RS01835 () | 331544..332437 | + | 894 | WP_000148322.1 | DnaD domain-containing protein | - |
| CSC58_RS01840 () | 332444..332662 | + | 219 | WP_000338530.1 | hypothetical protein | - |
| CSC58_RS01845 () | 332671..333075 | + | 405 | WP_000401960.1 | RusA family crossover junction endodeoxyribonuclease | - |
| CSC58_RS01850 () | 333088..333456 | + | 369 | WP_000101288.1 | hypothetical protein | - |
| CSC58_RS01855 () | 333460..333702 | + | 243 | WP_000131389.1 | hypothetical protein | - |
| CSC58_RS01860 () | 333767..334216 | + | 450 | WP_000982711.1 | hypothetical protein | - |
| CSC58_RS01865 () | 334213..334722 | + | 510 | WP_001105598.1 | hypothetical protein | - |
| CSC58_RS01870 () | 334719..335129 | + | 411 | WP_000197968.1 | hypothetical protein | - |
| CSC58_RS01875 () | 335122..335610 | + | 489 | Protein_345 | DUF1024 family protein | - |
| CSC58_RS01880 () | 335603..336139 | + | 537 | WP_001066443.1 | dUTP diphosphatase | - |
| CSC58_RS01885 () | 336176..336421 | + | 246 | WP_001282074.1 | hypothetical protein | - |
| CSC58_RS01890 () | 336418..336624 | + | 207 | WP_000195803.1 | DUF1381 domain-containing protein | - |
| CSC58_RS01895 () | 336621..337007 | + | 387 | WP_000592207.1 | hypothetical protein | - |
| CSC58_RS01900 () | 337004..337153 | + | 150 | WP_000595265.1 | transcriptional activator RinB | - |
| CSC58_RS01905 () | 337153..337353 | + | 201 | WP_000265043.1 | DUF1514 family protein | - |
| CSC58_RS01910 () | 337381..337797 | + | 417 | WP_000590122.1 | hypothetical protein | - |
| CSC58_RS01915 () | 338029..338328 | + | 300 | WP_000988336.1 | HNH endonuclease | - |
| CSC58_RS01920 () | 338459..338803 | + | 345 | WP_000402904.1 | hypothetical protein | - |
| CSC58_RS01925 () | 338800..340461 | + | 1662 | WP_000625088.1 | terminase large subunit | - |
| CSC58_RS01930 () | 340477..341664 | + | 1188 | WP_000025274.1 | phage portal protein | - |
| CSC58_RS01935 () | 341648..342385 | + | 738 | WP_000861914.1 | Clp protease ClpP | - |
| CSC58_RS01940 () | 342409..343554 | + | 1146 | WP_000154555.1 | phage major capsid protein | - |
| CSC58_RS01945 () | 343574..343858 | + | 285 | WP_000238236.1 | hypothetical protein | - |
| CSC58_RS01950 () | 343848..344132 | + | 285 | WP_000150936.1 | phage head-tail adapter protein | - |
| CSC58_RS01955 () | 344116..344478 | + | 363 | WP_000755150.1 | head-tail adaptor protein | - |
| CSC58_RS01960 () | 344475..344879 | + | 405 | WP_000114225.1 | HK97 gp10 family phage protein | - |
| CSC58_RS01965 () | 344876..345283 | + | 408 | WP_000565498.1 | hypothetical protein | - |
| CSC58_RS01970 () | 345284..345928 | + | 645 | WP_000268741.1 | phage tail protein | - |
| CSC58_RS01975 () | 345970..346194 | + | 225 | WP_072050172.1 | Ig-like domain-containing protein | - |
| CSC58_RS01980 () | 346244..346594 | + | 351 | WP_001096355.1 | hypothetical protein | - |
| CSC58_RS14810 () | 346645..346782 | + | 138 | WP_001549167.1 | hypothetical protein | - |
| CSC58_RS01985 () | 346839..351368 | + | 4530 | WP_001795393.1 | phage tail tape measure protein | - |
| CSC58_RS01990 () | 351365..352849 | + | 1485 | WP_000567408.1 | phage tail family protein | - |
| CSC58_RS01995 () | 352865..356647 | + | 3783 | WP_031806961.1 | phage minor structural protein | - |
| CSC58_RS02000 () | 356640..356792 | + | 153 | WP_001000058.1 | hypothetical protein | - |
| CSC58_RS02005 () | 356838..357125 | + | 288 | WP_001262620.1 | hypothetical protein | - |
| CSC58_RS02010 () | 357181..357555 | + | 375 | WP_000340977.1 | hypothetical protein | - |
| CSC58_RS02015 () | 357698..357874 | + | 177 | WP_072353918.1 | putative holin-like toxin | Toxin Detail |
| - () | 357862..358036 | - | 175 | - | - | Antitoxin Detail |
| CSC58_RS02025 () | 358086..358340 | + | 255 | WP_000611512.1 | phage holin | - |
| CSC58_RS02030 () | 358352..359107 | + | 756 | WP_000861038.1 | CHAP domain-containing protein | - |
| CSC58_RS02035 () | 359298..359789 | + | 492 | WP_000919350.1 | Staphylokinase | VF |
| CSC58_RS02045 () | 360439..360774 | + | 336 | Protein_379 | SH3 domain-containing protein | - |
| CSC58_RS02050 () | 360869..361318 | - | 450 | WP_000727651.1 | Chemotaxis inhibitory protein | VF |
| CSC58_RS02055 () | 362000..362350 | + | 351 | WP_000702262.1 | Staphylococcal complement inhibitor | VF |
| CSC58_RS02060 () | 362403..362663 | - | 261 | WP_001791826.1 | hypothetical protein | - |
| CSC58_RS02070 () | 362974..363153 | - | 180 | WP_000669789.1 | hypothetical protein | - |
| CSC58_RS02075 () | 363475..363725 | - | 251 | Protein_384 | Phospholipase C | VF |
| CSC58_RS02080 () | 364111..365859 | + | 1749 | WP_001792928.1 | 65 kDa membrane protein | VF |
| CSC58_RS02085 () | 365846..366160 | + | 315 | Protein_386 | Protein map | VF |
| CSC58_RS02090 () | 366484..367770 | - | 1287 | WP_001068523.1 | aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme | - |
| CSC58_RS02095 () | 367970..368068 | + | 99 | WP_000990056.1 | hypothetical protein | - |
| CSC58_RS02100 () | 368311..368487 | + | 177 | WP_000681968.1 | hypothetical protein | - |
| CSC58_RS02105 () | 368746..369126 | + | 381 | WP_000691584.1 | GntR family transcriptional regulator | - |
| CSC58_RS02110 () | 369123..370019 | + | 897 | WP_000991301.1 | ABC transporter ATP-binding protein NatA | VF |
| CSC58_RS02115 () | 370020..370700 | + | 681 | WP_000645733.1 | phenol-soluble modulin export ABC transporter permease subunit PmtB | - |
| CSC58_RS02120 () | 370697..371569 | + | 873 | WP_000763048.1 | phenol-soluble modulin export ABC transporter ATP-binding protein PmtC | - |
| CSC58_RS02125 () | 371569..372309 | + | 741 | WP_001221651.1 | phenol-soluble modulin export ABC transporter permease subunit PmtD | - |
| CSC58_RS02130 () | 372375..372938 | - | 564 | WP_000182842.1 | thioredoxin family protein | - |
| CSC58_RS02135 () | 373059..373583 | + | 525 | WP_000966288.1 | membrane protein | - |
| CSC58_RS02140 () | 373643..374200 | + | 558 | WP_001033971.1 | DUF1700 domain-containing protein | - |
| CSC58_RS02145 () | 374197..375039 | + | 843 | WP_000713072.1 | DUF4097 family beta strand repeat protein | - |
| CSC58_RS02150 () | 375096..376136 | - | 1041 | WP_001188043.1 | linear amide C-N hydrolase | - |
| CSC58_RS02155 () | 376587..376760 | + | 174 | WP_000267034.1 | hypothetical protein | - |
| CSC58_RS02160 () | 376817..377122 | - | 306 | Protein_401 | YolD-like family protein | - |
| CSC58_RS02165 () | 377308..378420 | + | 1113 | WP_000706211.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| CSC58_RS02170 () | 378423..380486 | + | 2064 | WP_000026854.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| CSC58_RS02175 () | 380495..380860 | + | 366 | WP_000514485.1 | hypothetical protein | - |
| CSC58_RS02180 () | 380889..381299 | - | 411 | WP_000612780.1 | YolD-like family protein | - |
| CSC58_RS02185 () | 381790..383469 | + | 1680 | WP_049308183.1 | IS1182 family transposase ISSep1 | Transposase |
| CSC58_RS02190 () | 383520..384365 | - | 846 | WP_000733621.1 | Beta-lactamase | ARG |
| CSC58_RS02195 () | 384472..386229 | + | 1758 | WP_001096369.1 | beta-lactam sensor/signal transducer BlaR1 | - |
| CSC58_RS02200 () | 386219..386599 | + | 381 | WP_001284658.1 | penicillinase repressor BlaI | - |
| CSC58_RS02205 () | 387058..388086 | + | 1029 | WP_000181322.1 | lactonase family protein | - |
| CSC58_RS02210 () | 388206..389585 | - | 1380 | WP_064140212.1 | aldehyde dehydrogenase | - |
| CSC58_RS02215 () | 389637..389810 | + | 174 | WP_000637587.1 | hypothetical protein | - |
| CSC58_RS02220 () | 390003..390932 | - | 930 | WP_001140871.1 | manganese-dependent inorganic pyrophosphatase | - |
| CSC58_RS02225 () | 390985..391545 | - | 561 | WP_000149686.1 | Peroxyureidoacrylate/ureidoacrylate amidohydrolase RutB | VF |
| CSC58_RS02230 () | 391917..393014 | + | 1098 | WP_000275706.1 | pectate lyase | - |
| CSC58_RS02235 () | 393219..394781 | + | 1563 | WP_000323163.1 | SLC13 family permease | - |
| CSC58_RS02240 () | 394792..394899 | - | 108 | WP_001802312.1 | hypothetical protein | - |
| CSC58_RS02245 () | 394971..395765 | - | 795 | WP_001177828.1 | prephenate dehydratase | - |
| CSC58_RS02250 () | 395785..396861 | - | 1077 | WP_000897635.1 | nitric oxide synthase oxygenase | - |
| CSC58_RS02255 () | 397045..398514 | + | 1470 | WP_110179782.1 | nicotinate phosphoribosyltransferase | - |
| CSC58_RS02260 () | 398507..399328 | + | 822 | WP_000040866.1 | ammonia-dependent NAD(+) synthetase | - |
| CSC58_RS02265 () | 399599..400201 | + | 603 | WP_000011542.1 | DUF2179 domain-containing protein | - |
| CSC58_RS02270 () | 400182..400355 | + | 174 | WP_000669864.1 | NETI motif-containing protein | - |
| CSC58_RS02275 () | 400647..400973 | - | 327 | WP_000434933.1 | staphostatin A | - |
| CSC58_RS02280 () | 401004..402170 | - | 1167 | WP_000827764.1 | Staphopain A | VF |
| CSC58_RS02285 () | 403031..404326 | + | 1296 | WP_000572878.1 | adenylosuccinate lyase | - |
| CSC58_RS02290 () | 404435..404737 | + | 303 | WP_001165363.1 | hypothetical protein | - |
| CSC58_RS02295 () | 404909..405601 | + | 693 | WP_000272071.1 | heptaprenylglyceryl phosphate synthase | - |
| CSC58_RS02300 () | 405598..407790 | + | 2193 | WP_000992921.1 | DNA helicase PcrA | - |
| CSC58_RS02305 () | 407794..409797 | + | 2004 | WP_000774565.1 | NAD-dependent DNA ligase LigA | - |
| CSC58_RS02310 () | 409810..411009 | + | 1200 | WP_000831692.1 | CamS family sex pheromone protein | - |
| CSC58_RS02315 () | 411098..412636 | - | 1539 | WP_000957020.1 | sodium/proline symporter PutP | - |
| CSC58_RS02320 () | 413004..413306 | + | 303 | WP_000170162.1 | Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC | - |
| CSC58_RS02325 () | 413308..414765 | + | 1458 | WP_000027917.1 | Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|