MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 79320 bp
Accession: NZ_CP028898 Location: 1..79320 Organism: Dongshaea marina strain DM2 Replicon: plasmid unnamed
Accession: NZ_CP028898 Location: 1..79320 Organism: Dongshaea marina strain DM2 Replicon: plasmid unnamed
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DB847_RS23655 () | 1771..3117 | + | 1347 | WP_108653087.1 | Type IV secretion system putative outer membrane lipoprotein/BS1330_II0058 | VF |
| DB847_RS23660 () | 3110..4621 | + | 1512 | WP_108653088.1 | hypothetical protein | - |
| DB847_RS23665 () | 4630..5727 | + | 1098 | WP_108653089.1 | hypothetical protein | - |
| DB847_RS23670 () | 5731..6336 | + | 606 | WP_108653090.1 | hypothetical protein | - |
| DB847_RS23675 () | 6345..7970 | + | 1626 | WP_108653091.1 | Type II secretion system protein E | VF |
| DB847_RS23680 () | 7967..9001 | + | 1035 | WP_108653092.1 | hypothetical protein | - |
| DB847_RS23685 () | 9012..9509 | + | 498 | WP_108653093.1 | hypothetical protein | - |
| DB847_RS23690 () | 9545..10075 | + | 531 | WP_108653094.1 | hypothetical protein | - |
| DB847_RS23695 () | 10075..11028 | + | 954 | WP_108653095.1 | hypothetical protein | - |
| DB847_RS23700 () | 11038..11493 | + | 456 | WP_108653096.1 | hypothetical protein | - |
| DB847_RS23705 () | 11523..12530 | + | 1008 | WP_108653097.1 | S1 family peptidase | - |
| DB847_RS23710 () | 12523..12918 | + | 396 | WP_108653098.1 | H-NS histone family protein | - |
| DB847_RS23715 () | 13030..13269 | + | 240 | WP_108653099.1 | hypothetical protein | - |
| DB847_RS23735 () | 13626..14330 | + | 705 | WP_108653100.1 | endonuclease | - |
| DB847_RS23740 () | 14365..14892 | + | 528 | WP_108653101.1 | lipocalin family protein | - |
| DB847_RS23745 () | 14932..16356 | + | 1425 | WP_108650532.1 | IS4 family transposase IS50R | Transposase |
| DB847_RS23750 () | 16785..17132 | + | 348 | WP_108653102.1 | hypothetical protein | Relaxase |
| DB847_RS23755 () | 17926..20199 | + | 2274 | WP_159084837.1 | hypothetical protein | - |
| DB847_RS23760 () | 20474..20995 | + | 522 | WP_108653104.1 | hypothetical protein | - |
| DB847_RS23765 () | 21006..21743 | + | 738 | WP_108653105.1 | StbB | - |
| DB847_RS23770 () | 21733..22263 | + | 531 | WP_108653106.1 | hypothetical protein | - |
| DB847_RS23775 () | 22381..23136 | + | 756 | WP_108653107.1 | Type IV secretion system protein virB5 | VF |
| DB847_RS23780 () | 23149..24186 | + | 1038 | WP_108653108.1 | type IV secretion system protein | - |
| DB847_RS23785 () | 24856..25989 | + | 1134 | WP_108653109.1 | ATP-binding protein | - |
| DB847_RS23790 () | 25982..28261 | + | 2280 | WP_108653110.1 | S8 family peptidase | - |
| DB847_RS23795 () | 28755..29360 | - | 606 | WP_108653111.1 | hypothetical protein | - |
| DB847_RS23800 () | 30169..30642 | + | 474 | WP_108653112.1 | tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO | - |
| DB847_RS23805 () | 30720..31517 | + | 798 | WP_108653113.1 | sulfite exporter TauE/SafE family protein | - |
| DB847_RS23810 () | 31496..32383 | - | 888 | WP_108653114.1 | hypothetical protein | - |
| DB847_RS23815 () | 32407..32829 | - | 423 | WP_159084838.1 | PaaI family thioesterase | - |
| DB847_RS23820 () | 32822..33322 | - | 501 | WP_159084839.1 | hypothetical protein | - |
| DB847_RS23825 () | 33300..33614 | - | 315 | WP_108653117.1 | DUF134 domain-containing protein | - |
| DB847_RS23830 () | 34553..35773 | - | 1221 | WP_108653118.1 | IS91 family transposase | - |
| DB847_RS23835 () | 35830..36039 | + | 210 | WP_108653119.1 | IS66 family transposase ISVme1 | Transposase |
| DB847_RS23840 () | 36526..38073 | + | 1548 | WP_108649425.1 | IS21 family transposase ISShfr5 | Transposase |
| DB847_RS23845 () | 38083..38837 | + | 755 | Protein_36 | IS21-like element helper ATPase IstB | - |
| DB847_RS23850 () | 38886..39473 | - | 588 | WP_108653120.1 | GAF domain-containing protein | - |
| DB847_RS24630 () | 39899..40387 | - | 489 | WP_159084840.1 | hypothetical protein | - |
| DB847_RS23875 () | 41439..41669 | + | 231 | WP_108653125.1 | late competence development ComFB family protein | - |
| DB847_RS23880 () | 41728..42078 | - | 351 | WP_108653126.1 | hemerythrin family protein | - |
| DB847_RS23885 () | 42172..42927 | - | 756 | WP_159084841.1 | hypothetical protein | - |
| DB847_RS23900 () | 43662..43919 | - | 258 | WP_108653130.1 | hypothetical protein | - |
| DB847_RS23905 () | 43996..44469 | - | 474 | WP_108653131.1 | hypothetical protein | VF |
| DB847_RS23910 () | 44555..45196 | - | 642 | WP_108653132.1 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| DB847_RS23915 () | 45357..46979 | + | 1623 | WP_108653133.1 | DUF4158 domain-containing protein | - |
| DB847_RS23920 () | 47004..47408 | - | 405 | WP_108653134.1 | hypothetical protein | - |
| DB847_RS23925 () | 47444..47992 | - | 549 | WP_108653135.1 | Tn3 family transposase TnpR_Tn3 | Transposase |
| DB847_RS23930 () | 48154..51159 | + | 3006 | WP_108653136.1 | Tn3 family transposase TnpA_Tn3 | Transposase |
| DB847_RS23935 () | 51198..52529 | + | 1332 | Protein_49 | Tn3 family transposase TnpA_ISShfr9 | Transposase |
| DB847_RS25245 () | 52620..52862 | - | 243 | WP_199911898.1 | hypothetical protein | - |
| DB847_RS23945 () | 52945..53220 | - | 276 | WP_108653137.1 | HU family DNA-binding protein | - |
| DB847_RS23950 () | 53259..53597 | - | 339 | WP_108653138.1 | hypothetical protein | - |
| DB847_RS23955 () | 54072..54266 | - | 195 | WP_108653139.1 | hypothetical protein | - |
| DB847_RS23960 () | 54376..54669 | - | 294 | WP_108653140.1 | hypothetical protein | - |
| DB847_RS23965 () | 55120..55284 | + | 165 | WP_108653141.1 | DUF3950 domain-containing protein | - |
| DB847_RS23970 () | 55407..55850 | - | 444 | WP_108653142.1 | hypothetical protein | - |
| DB847_RS23975 () | 55843..56565 | - | 723 | WP_108653143.1 | AAA family ATPase | - |
| DB847_RS23985 () | 58132..58722 | + | 591 | WP_108653145.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| DB847_RS23990 () | 58934..59116 | + | 183 | WP_108653146.1 | type II toxin-antitoxin system HicA family toxin | Toxin Detail |
| DB847_RS23995 () | 59141..59551 | + | 411 | WP_108653147.1 | type II toxin-antitoxin system HicB family antitoxin | Antitoxin Detail |
| DB847_RS24000 () | 59723..59965 | + | 243 | WP_108653148.1 | hypothetical protein | - |
| DB847_RS24005 () | 60374..60973 | + | 600 | WP_108653149.1 | hypothetical protein | - |
| DB847_RS24010 () | 61024..61608 | + | 585 | WP_159084843.1 | helix-turn-helix domain-containing protein | - |
| DB847_RS24015 () | 61630..62052 | + | 423 | WP_108653151.1 | thioesterase family protein | - |
| DB847_RS24020 () | 62177..62635 | - | 459 | WP_108653152.1 | helix-turn-helix domain-containing protein | - |
| DB847_RS24030 () | 64126..64530 | + | 405 | WP_108653154.1 | hypothetical protein | - |
| DB847_RS24035 () | 64657..64956 | + | 300 | WP_108653155.1 | Type IV secretion system protein virB2 | VF |
| DB847_RS24040 () | 64971..65306 | + | 336 | WP_108653156.1 | Type IV secretion system protein virB3 | VF |
| DB847_RS24045 () | 65327..67858 | + | 2532 | WP_108653157.1 | Type IV secretion system protein virB4 | VF |
| DB847_RS24050 () | 67942..68640 | + | 699 | WP_108653158.1 | Type IV secretion system protein virB8 | VF |
| DB847_RS24055 () | 68651..69520 | + | 870 | WP_159084844.1 | Type IV secretion system protein virB9 | VF |
| DB847_RS24060 () | 69513..70691 | + | 1179 | WP_108653160.1 | Type IV secretion system protein virB10 | VF |
| DB847_RS24065 () | 70688..71722 | + | 1035 | WP_108653161.1 | Type IV secretion system protein VirB11 | VF |
| DB847_RS24635 () | 71746..71922 | + | 177 | WP_159084845.1 | hypothetical protein | - |
| DB847_RS24070 () | 71985..72350 | + | 366 | WP_159084846.1 | hypothetical protein | - |
| DB847_RS24075 () | 72452..72766 | + | 315 | WP_108653163.1 | hypothetical protein | - |
| DB847_RS24080 () | 72839..73138 | + | 300 | WP_108653164.1 | hypothetical protein | - |
| DB847_RS24640 () | 73224..73400 | - | 177 | WP_159084847.1 | hypothetical protein | - |
| DB847_RS24085 () | 73568..73906 | + | 339 | WP_108653165.1 | hypothetical protein | - |
| DB847_RS24645 () | 74246..74542 | + | 297 | WP_159084848.1 | hypothetical protein | - |
| DB847_RS24095 () | 74563..74757 | + | 195 | WP_159084849.1 | hypothetical protein | - |
| DB847_RS24100 () | 74754..76592 | + | 1839 | WP_108653168.1 | Protein VirD4 | VF |
| DB847_RS24650 () | 76589..76759 | - | 171 | WP_159084850.1 | hypothetical protein | - |
| DB847_RS24105 () | 76875..77240 | + | 366 | WP_108653169.1 | hypothetical protein | - |
| DB847_RS24110 () | 77272..77433 | + | 162 | WP_108653170.1 | conjugal transfer protein TraD | - |
| DB847_RS24115 () | 77417..78415 | + | 999 | WP_108653171.1 | DUF1738 domain-containing protein | - |
| DB847_RS24120 () | 78418..78999 | + | 582 | WP_108653172.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|