MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 93180 bp
Accession: NZ_CP028682 Location: 1..93180 Organism: Escherichia coli strain 113 Replicon: plasmid pTA113
Accession: NZ_CP028682 Location: 1..93180 Organism: Escherichia coli strain 113 Replicon: plasmid pTA113
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C9E42_RS27805 () | 13..870 | + | 858 | WP_000130945.1 | incFII family plasmid replication initiator RepA | - |
| C9E42_RS27820 () | 1781..2065 | + | 285 | WP_001178089.1 | ribbon-helix-helix domain-containing protein | Antitoxin Detail |
| C9E42_RS27825 () | 2065..2340 | + | 276 | WP_000421248.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| C9E42_RS27830 () | 2435..2641 | + | 207 | WP_001105064.1 | hypothetical protein | - |
| C9E42_RS27835 () | 2741..2956 | - | 216 | Protein_5 | transposase | - |
| C9E42_RS27840 () | 3000..3566 | - | 567 | Protein_6 | IS3 family transposase ISSd1 | Transposase |
| C9E42_RS27845 () | 3566..3982 | - | 417 | Protein_7 | IS91 family transposase | - |
| C9E42_RS27850 () | 3982..4167 | - | 186 | WP_001302179.1 | hypothetical protein | - |
| C9E42_RS27855 () | 4344..6554 | + | 2211 | WP_000592771.1 | Catalase-peroxidase | VF |
| C9E42_RS27860 () | 6598..6987 | + | 390 | WP_001172748.1 | cytochrome b562 family protein | - |
| C9E42_RS27865 () | 7044..8032 | + | 989 | Protein_11 | IS3 family transposase IS629 | Transposase |
| C9E42_RS27875 () | 8213..12115 | + | 3903 | WP_001034097.1 | Serine protease EspP | VF |
| C9E42_RS27880 () | 12371..12852 | - | 482 | Protein_13 | IS1 family transposase IS1N | Transposase |
| C9E42_RS27890 () | 14293..15114 | + | 822 | WP_001302199.1 | polysaccharide deacetylase family protein | - |
| C9E42_RS27895 () | 15114..16220 | + | 1107 | WP_000975743.1 | glycosyltransferase family 4 protein | - |
| C9E42_RS27900 () | 16310..18031 | + | 1722 | WP_000550559.1 | phosphoethanolamine transferase CptA | - |
| C9E42_RS27905 () | 18105..19103 | + | 999 | WP_001302181.1 | Lipid A biosynthesis myristoyltransferase | VF |
| C9E42_RS27910 () | 19156..19344 | + | 189 | Protein_18 | hypothetical protein | - |
| C9E42_RS27915 () | 19448..19534 | - | 87 | Protein_19 | IS3 family transposase ISEhe3 | Transposase |
| C9E42_RS27930 () | 19994..22690 | + | 2697 | WP_072141201.1 | Metalloprotease StcE | VF |
| C9E42_RS27935 () | 22777..23652 | + | 876 | WP_001302175.1 | Type II secretion system protein C | VF |
| C9E42_RS27940 () | 23653..25620 | + | 1968 | WP_001302177.1 | Type II secretion system protein D | VF |
| C9E42_RS27945 () | 25620..27125 | + | 1506 | WP_000092338.1 | Type II secretion system protein E | VF |
| C9E42_RS27950 () | 27127..28350 | + | 1224 | WP_001173152.1 | Type II secretion system protein F | VF |
| C9E42_RS27955 () | 28381..28815 | + | 435 | WP_001231211.1 | Type II secretion system protein G | VF |
| C9E42_RS27960 () | 28812..29366 | + | 555 | WP_000082929.1 | Putative type II secretion system protein H | VF |
| C9E42_RS27965 () | 29381..29728 | + | 348 | WP_000173396.1 | Type II secretion system protein I | VF |
| C9E42_RS27970 () | 29725..30324 | + | 600 | WP_000082782.1 | Type II secretion system protein J | VF |
| C9E42_RS27975 () | 30321..31298 | + | 978 | WP_000776550.1 | Putative type II secretion system protein K | VF |
| C9E42_RS27980 () | 31337..32509 | + | 1173 | WP_071525076.1 | Type II secretion system protein L | VF |
| C9E42_RS27985 () | 32496..33008 | + | 513 | WP_001004187.1 | Type II secretion system protein M | VF |
| C9E42_RS27990 () | 33066..33899 | + | 834 | WP_000096786.1 | Type 4 prepilin-like proteins leader peptide-processing enzyme | VF |
| C9E42_RS27995 () | 33991..34392 | + | 402 | WP_000971918.1 | GspS family T2SS pilot lipoprotein variant EptO | - |
| C9E42_RS28000 () | 34571..35742 | + | 1172 | Protein_34 | IS3 family transposase ISLad1 | Transposase |
| C9E42_RS28010 () | 36283..36798 | + | 516 | WP_000839950.1 | Hemolysin-activating lysine-acyltransferase HlyC | VF |
| C9E42_RS28015 () | 36800..39796 | + | 2997 | WP_000217739.1 | Hemolysin, chromosomal | VF |
| C9E42_RS28020 () | 39846..41966 | + | 2121 | WP_000987091.1 | Alpha-hemolysin translocation ATP-binding protein HlyB | VF |
| C9E42_RS28025 () | 41970..43409 | + | 1440 | WP_001213545.1 | Hemolysin secretion protein D, chromosomal | VF |
| C9E42_RS28555 () | 43530..44022 | + | 493 | Protein_39 | Transcriptional repressor MprA | VF |
| C9E42_RS28045 () | 44153..44383 | + | 231 | WP_010891288.1 | hypothetical protein | - |
| C9E42_RS28050 () | 44504..45244 | + | 741 | WP_001066920.1 | IS91 family transposase ISMno23 | Transposase |
| C9E42_RS28055 () | 45529..46506 | - | 978 | WP_001508846.1 | RepB family plasmid replication initiator protein | - |
| C9E42_RS28065 () | 46914..47114 | - | 201 | WP_000708307.1 | hypothetical protein | - |
| C9E42_RS28070 () | 47111..47731 | - | 621 | WP_001248529.1 | hypothetical protein | - |
| C9E42_RS28075 () | 47728..48411 | - | 684 | WP_010891291.1 | DNA-binding protein | - |
| C9E42_RS28080 () | 48870..49088 | + | 219 | WP_000813634.1 | type II toxin-antitoxin system antitoxin CcdA | Antitoxin Detail |
| C9E42_RS28085 () | 49090..49395 | + | 306 | WP_001159868.1 | type II toxin-antitoxin system toxin CcdB | Toxin Detail |
| C9E42_RS28090 () | 49396..50202 | + | 807 | WP_000016989.1 | site-specific integrase | - |
| C9E42_RS28105 () | 52214..52969 | + | 756 | WP_000852148.1 | replication initiation protein RepE | - |
| C9E42_RS28110 () | 53557..54723 | + | 1167 | WP_000772446.1 | Sporulation initiation inhibitor protein Soj | VF |
| C9E42_RS28115 () | 54723..55694 | + | 972 | WP_000817031.1 | ParB/RepB/Spo0J family plasmid partition protein | - |
| C9E42_RS28125 () | 56303..57205 | + | 903 | WP_000273919.1 | DUF1281 domain-containing protein | - |
| C9E42_RS28130 () | 57209..57514 | + | 306 | WP_010891292.1 | hypothetical protein | - |
| C9E42_RS28135 () | 57591..58274 | + | 684 | WP_000085945.1 | DNA methylase | - |
| C9E42_RS28140 () | 58275..58496 | + | 222 | WP_001104869.1 | hypothetical protein | - |
| C9E42_RS28145 () | 58390..58944 | + | 555 | WP_001358893.1 | DUF1380 family protein | - |
| C9E42_RS28560 () | 58990..59766 | + | 777 | WP_001005037.1 | hypothetical protein | - |
| C9E42_RS28160 () | 60307..60609 | + | 303 | WP_010891293.1 | antirestriction protein | - |
| C9E42_RS28165 () | 60656..61078 | + | 423 | WP_000271685.1 | DUF1380 family protein | - |
| C9E42_RS28170 () | 61075..61266 | + | 192 | WP_001027495.1 | hypothetical protein | - |
| C9E42_RS28565 () | 61236..61745 | - | 510 | WP_032245379.1 | hypothetical protein | - |
| C9E42_RS28185 () | 62262..62492 | + | 231 | WP_000218642.1 | hypothetical protein | - |
| C9E42_RS28190 () | 62544..63905 | + | 1362 | WP_000199442.1 | DUF3560 domain-containing protein | - |
| C9E42_RS28195 () | 63952..64515 | + | 564 | WP_001302171.1 | class I SAM-dependent methyltransferase | - |
| C9E42_RS28200 () | 64601..65050 | - | 450 | WP_001451816.1 | hypothetical protein | - |
| C9E42_RS28205 () | 65120..65326 | + | 207 | WP_000547965.1 | hypothetical protein | - |
| C9E42_RS28210 () | 65352..65804 | + | 453 | WP_000290823.1 | single-stranded DNA-binding protein | - |
| C9E42_RS28215 () | 65861..66094 | + | 234 | WP_000005995.1 | DUF905 family protein | - |
| C9E42_RS28220 () | 66160..68118 | + | 1959 | WP_000117168.1 | ParB/RepB/Spo0J family partition protein | - |
| C9E42_RS28225 () | 68173..68607 | + | 435 | WP_000845908.1 | conjugation system SOS inhibitor PsiB | - |
| C9E42_RS28230 () | 68604..69365 | + | 762 | WP_001276250.1 | plasmid SOS inhibition protein A | - |
| - () | 69334..69532 | + | 199 | NuclAT_0 | - | - |
| - () | 69334..69532 | + | 199 | NuclAT_0 | - | - |
| - () | 69334..69532 | + | 199 | NuclAT_0 | - | - |
| - () | 69334..69532 | + | 199 | NuclAT_0 | - | - |
| C9E42_RS28235 () | 69597..69755 | + | 159 | WP_001302184.1 | type I toxin-antitoxin system Hok family toxin | - |
| C9E42_RS28240 () | 69889..71910 | + | 2022 | Protein_74 | hypothetical protein | Relaxase |
| C9E42_RS28245 () | 71978..72409 | + | 432 | WP_001453090.1 | hypothetical protein | - |
| C9E42_RS28255 () | 73046..73395 | - | 350 | Protein_76 | IS3 family transposase IS3H | Transposase |
| C9E42_RS28260 () | 73489..73752 | + | 264 | Protein_77 | IS21 family transposase ISEc62 | Transposase |
| C9E42_RS28265 () | 73792..73912 | + | 121 | Protein_78 | IS21 family transposase ISEc62 | Transposase |
| C9E42_RS28270 () | 73909..74061 | + | 153 | Protein_79 | IS1 family transposase | - |
| C9E42_RS28275 () | 74168..83677 | + | 9510 | WP_000581719.1 | Toxin B | VF |
| C9E42_RS28280 () | 83751..83975 | + | 225 | Protein_81 | IS3 family transposase IS3H | Transposase |
| C9E42_RS28285 () | 84043..84213 | - | 171 | Protein_82 | IS3 family transposase IS1203 | Transposase |
| C9E42_RS28290 () | 84220..84471 | - | 252 | Protein_83 | IS3 family transposase IS1203 | Transposase |
| C9E42_RS28295 () | 84672..85052 | + | 381 | WP_001171554.1 | IS66 family transposase ISEc8 | Transposase |
| C9E42_RS28300 () | 85049..85396 | + | 348 | WP_000612591.1 | IS66 family transposase ISEc8 | Transposase |
| C9E42_RS28305 () | 85446..86984 | + | 1539 | WP_000998048.1 | IS66 family transposase ISEc8 | Transposase |
| C9E42_RS28310 () | 87035..88366 | + | 1332 | Protein_87 | Multifunctional conjugation protein TraI | Relaxase |
| C9E42_RS28315 () | 88386..89132 | + | 747 | WP_000205762.1 | conjugal transfer pilus acetylase TraX | - |
| C9E42_RS28320 () | 89191..90051 | + | 861 | WP_000704522.1 | putative protein YcjY | VF |
| C9E42_RS28325 () | 90154..90714 | + | 561 | WP_000840472.1 | fertility inhibition protein FinO | - |
| C9E42_RS28330 () | 90847..91059 | + | 213 | WP_001302189.1 | ANR family transcriptional regulator | - |
| C9E42_RS28335 () | 91304..91765 | + | 462 | WP_001233853.1 | thermonuclease family protein | - |
| C9E42_RS28340 () | 91811..92020 | + | 210 | WP_001302200.1 | hemolysin expression modulator Hha | - |
| C9E42_RS28345 () | 92058..92396 | + | 339 | WP_000766796.1 | hypothetical protein | - |
| C9E42_RS28350 () | 92636..92890 | + | 255 | WP_000083831.1 | replication regulatory protein RepA | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|