MGE detailed information
MGE type: Prophage MGE length: 122512 bp
Accession: NZ_CP028641 Location: 2507010..2629521 Organism: Escherichia coli strain 132 Replicon: chromosome
Accession: NZ_CP028641 Location: 2507010..2629521 Organism: Escherichia coli strain 132 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C9E56_RS12795 () | 2502910..2504130 | + | 1221 | WP_000225276.1 | DNA-binding transcriptional repressor Mlc | - |
| C9E56_RS12800 () | 2504255..2504950 | + | 696 | WP_000919231.1 | dethiobiotin synthase | - |
| C9E56_RS12805 () | 2504903..2506195 | - | 1293 | WP_071525082.1 | voltage-gated ClC-type chloride channel ClcB | - |
| C9E56_RS12810 () | 2506353..2506967 | - | 615 | WP_000148710.1 | Tat proofreading chaperone DmsD | - |
| C9E56_RS12815 () | 2507010..2507864 | - | 855 | WP_000526515.1 | dimethyl sulfoxide reductase anchor subunit | - |
| C9E56_RS12820 () | 2507866..2508483 | - | 618 | WP_000213028.1 | dimethylsulfoxide reductase subunit B | - |
| C9E56_RS12825 () | 2508494..2510917 | - | 2424 | WP_001414236.1 | dimethyl sulfoxide reductase subunit A | - |
| C9E56_RS12830 () | 2510978..2513404 | - | 2427 | WP_000041704.1 | dimethyl sulfoxide reductase subunit A | - |
| C9E56_RS12835 () | 2513603..2513908 | - | 306 | WP_000778147.1 | DUF1161 domain-containing protein | - |
| C9E56_RS12840 () | 2514016..2514726 | + | 711 | WP_001303515.1 | YnfC family lipoprotein | - |
| C9E56_RS12845 () | 2514729..2515289 | - | 561 | WP_001138581.1 | spermidine N1-acetyltransferase | - |
| C9E56_RS12850 () | 2515324..2515665 | - | 342 | WP_000705189.1 | DUF1283 family protein | - |
| C9E56_RS12855 () | 2515800..2516126 | + | 327 | WP_001302046.1 | YnfA family protein | - |
| C9E56_RS12865 () | 2516896..2517080 | - | 185 | Protein_2459 | DUF3596 domain-containing protein | - |
| C9E56_RS12870 () | 2517115..2517366 | - | 252 | WP_000005552.1 | excisionase family protein | - |
| C9E56_RS12875 () | 2517439..2519910 | - | 2472 | WP_000048458.1 | exonuclease | - |
| C9E56_RS12880 () | 2520003..2520194 | - | 192 | WP_001090200.1 | DUF1482 family protein | - |
| C9E56_RS12885 () | 2520191..2520379 | - | 189 | WP_000449192.1 | cell division inhibition protein DicB | - |
| C9E56_RS12895 () | 2520948..2521166 | - | 219 | WP_001171930.1 | hypothetical protein | - |
| C9E56_RS12900 () | 2521238..2521537 | - | 300 | WP_001240334.1 | hypothetical protein | - |
| C9E56_RS12905 () | 2521890..2522168 | - | 279 | WP_001303511.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| C9E56_RS12910 () | 2522170..2522361 | - | 192 | WP_001302048.1 | hypothetical protein | Antitoxin Detail |
| C9E56_RS12915 () | 2522382..2522753 | - | 372 | WP_001169686.1 | hypothetical protein | - |
| C9E56_RS12920 () | 2522851..2523153 | + | 303 | WP_000172738.1 | transcriptional regulator | - |
| C9E56_RS12925 () | 2523150..2523575 | + | 426 | WP_000693943.1 | Rha family transcriptional regulator | - |
| C9E56_RS12930 () | 2523598..2524560 | + | 963 | WP_000095670.1 | helix-turn-helix domain-containing protein | - |
| C9E56_RS12935 () | 2524567..2525307 | + | 741 | WP_000788936.1 | ATP-binding protein | - |
| C9E56_RS12940 () | 2525333..2526102 | + | 770 | Protein_2473 | DUF1627 domain-containing protein | - |
| C9E56_RS12945 () | 2526118..2526513 | + | 396 | WP_001118159.1 | DUF977 family protein | - |
| C9E56_RS12950 () | 2526570..2527154 | + | 585 | WP_000206793.1 | DUF551 domain-containing protein | - |
| C9E56_RS12955 () | 2527270..2527374 | + | 105 | WP_001278450.1 | hypothetical protein | - |
| C9E56_RS12960 () | 2527620..2527775 | + | 156 | WP_001303917.1 | type I toxin-antitoxin system toxin HokD | - |
| C9E56_RS12965 () | 2527943..2528221 | + | 279 | WP_012779366.1 | hypothetical protein | - |
| C9E56_RS12970 () | 2528223..2529272 | + | 1050 | WP_001265161.1 | DUF968 domain-containing protein | - |
| C9E56_RS12975 () | 2529285..2529644 | + | 360 | WP_001217455.1 | RusA family crossover junction endodeoxyribonuclease | - |
| C9E56_RS12980 () | 2529641..2530330 | + | 690 | WP_001059381.1 | antiterminator | - |
| C9E56_RS13005 () | 2530967..2531395 | + | 429 | WP_001303509.1 | tellurite resistance protein | - |
| C9E56_RS13010 () | 2531392..2531647 | + | 256 | Protein_2483 | DUF3927 family protein | - |
| C9E56_RS13015 () | 2531874..2533724 | + | 1851 | WP_024748470.1 | SASA family carbohydrate esterase | - |
| C9E56_RS13020 () | 2534164..2534379 | + | 216 | WP_024180155.1 | class II holin family protein | - |
| C9E56_RS13025 () | 2534384..2534728 | + | 345 | WP_000731259.1 | YdfR family protein | - |
| C9E56_RS13030 () | 2534779..2535312 | + | 534 | WP_000992137.1 | lysozyme | - |
| C9E56_RS13035 () | 2535582..2536151 | + | 570 | WP_001056806.1 | hypothetical protein | - |
| C9E56_RS13040 () | 2536151..2536297 | + | 147 | WP_000539792.1 | hypothetical protein | - |
| C9E56_RS13050 () | 2536525..2536710 | + | 186 | WP_012816791.1 | Rz1 family lipoprotein | - |
| C9E56_RS13055 () | 2537135..2537362 | - | 228 | WP_000095736.1 | DUF3950 domain-containing protein | - |
| C9E56_RS13060 () | 2537404..2537769 | + | 366 | WP_015994246.1 | HNH endonuclease | - |
| C9E56_RS13070 () | 2538059..2538622 | + | 564 | WP_001303051.1 | terminase small subunit | - |
| C9E56_RS13075 () | 2538619..2540280 | + | 1662 | WP_024748457.1 | terminase large subunit | - |
| C9E56_RS13080 () | 2540344..2542281 | + | 1938 | WP_000172999.1 | phage major capsid protein | - |
| C9E56_RS13085 () | 2542326..2542547 | + | 222 | WP_001063099.1 | hypothetical protein | - |
| C9E56_RS13090 () | 2542493..2545078 | + | 2586 | WP_137049511.1 | phage portal protein | - |
| C9E56_RS13095 () | 2545075..2545401 | + | 327 | WP_000125990.1 | head-tail connector protein | - |
| C9E56_RS13100 () | 2545411..2545761 | + | 351 | WP_001007905.1 | phage head closure protein | - |
| C9E56_RS13105 () | 2545758..2546204 | + | 447 | WP_000573374.1 | HK97 gp10 family phage protein | - |
| C9E56_RS13110 () | 2546201..2546545 | + | 345 | WP_000133388.1 | DUF3168 domain-containing protein | - |
| C9E56_RS13115 () | 2546604..2547320 | + | 717 | WP_001275508.1 | tail protein | - |
| C9E56_RS13120 () | 2547326..2547700 | + | 375 | WP_001030063.1 | phage tail assembly chaperone | - |
| C9E56_RS13125 () | 2547796..2548005 | + | 210 | WP_001453698.1 | DUF4035 domain-containing protein | - |
| C9E56_RS13130 () | 2548057..2551299 | + | 3243 | WP_137049510.1 | phage tail tape measure protein | - |
| C9E56_RS13135 () | 2551292..2551633 | + | 342 | WP_000807954.1 | phage tail protein | - |
| C9E56_RS13140 () | 2551633..2552331 | + | 699 | WP_001303038.1 | phage minor tail protein L | - |
| C9E56_RS13145 () | 2552342..2553085 | + | 744 | WP_046671488.1 | C40 family peptidase | - |
| C9E56_RS13150 () | 2553031..2553663 | + | 633 | WP_050439450.1 | tail assembly protein | - |
| C9E56_RS13155 () | 2554006..2555181 | + | 1176 | WP_001304109.1 | host specificity protein J | - |
| C9E56_RS13160 () | 2555133..2557478 | + | 2346 | WP_129137390.1 | host specificity protein J | - |
| C9E56_RS13165 () | 2557546..2558145 | + | 600 | WP_001228304.1 | Outer membrane protein X | VF |
| C9E56_RS13170 () | 2558297..2559610 | + | 1314 | WP_024748516.1 | ISNCY family transposase KIS | Transposase |
| C9E56_RS13175 () | 2559612..2559881 | + | 270 | WP_001023474.1 | phage tail fiber C-terminal domain-containing protein | - |
| C9E56_RS13180 () | 2559994..2560568 | + | 575 | Protein_2515 | hypothetical protein | VF |
| C9E56_RS13185 () | 2560908..2562233 | - | 1326 | WP_001025672.1 | hypothetical protein | VF |
| C9E56_RS13195 () | 2562894..2563808 | - | 915 | Protein_2517 | Tyrosine recombinase XerD ; Integrase | Integrase |
| C9E56_RS13200 () | 2563822..2563932 | + | 111 | Protein_2518 | type III effector | - |
| C9E56_RS13205 () | 2563979..2564613 | - | 635 | Protein_2519 | IS256 family transposase ISEic2 | Transposase |
| C9E56_RS13210 () | 2564898..2566436 | - | 1539 | WP_000998048.1 | IS66 family transposase ISEc8 | Transposase |
| C9E56_RS13215 () | 2566486..2566833 | - | 348 | WP_000612591.1 | IS66 family transposase ISEc8 | Transposase |
| C9E56_RS13220 () | 2566830..2567210 | - | 381 | WP_001171554.1 | IS66 family transposase ISEc8 | Transposase |
| C9E56_RS13225 () | 2567550..2567828 | - | 279 | WP_001303943.1 | hypothetical protein | - |
| C9E56_RS13230 () | 2568256..2568402 | + | 147 | WP_001414184.1 | hypothetical protein | - |
| C9E56_RS13235 () | 2568539..2569186 | - | 648 | WP_001303944.1 | hypothetical protein | VF |
| C9E56_RS13240 () | 2569370..2569960 | + | 591 | WP_001144877.1 | hypothetical protein | VF |
| C9E56_RS13245 () | 2570179..2571235 | - | 1057 | Protein_2527 | IS630 family transposase | - |
| C9E56_RS13250 () | 2571467..2572117 | + | 651 | WP_001345079.1 | hypothetical protein | VF |
| C9E56_RS13255 () | 2572276..2572511 | + | 236 | Protein_2529 | IS3 family transposase | - |
| C9E56_RS13265 () | 2573246..2573371 | + | 126 | Protein_2530 | outer membrane protein OmpW | - |
| C9E56_RS13270 () | 2573417..2574547 | - | 1131 | WP_001500821.1 | hypothetical protein ; Integrase | Integrase |
| C9E56_RS13275 () | 2574525..2574773 | - | 249 | WP_000113189.1 | excisionase | - |
| C9E56_RS13280 () | 2574838..2577282 | - | 2445 | WP_000102181.1 | exonuclease | - |
| C9E56_RS13285 () | 2577375..2577563 | - | 189 | WP_000092782.1 | DUF1482 family protein | - |
| C9E56_RS13290 () | 2577560..2577748 | - | 189 | WP_000450222.1 | cell division inhibitor | - |
| C9E56_RS13300 () | 2578313..2578522 | + | 210 | WP_001133037.1 | hypothetical protein | - |
| C9E56_RS13305 () | 2578523..2579161 | - | 639 | WP_000394548.1 | hypothetical protein | - |
| C9E56_RS13310 () | 2579173..2579325 | - | 153 | WP_000380316.1 | DUF1391 family protein | - |
| C9E56_RS13315 () | 2579618..2579956 | - | 339 | WP_001416688.1 | peptidase S24 | - |
| C9E56_RS13320 () | 2580348..2580590 | + | 243 | WP_000747948.1 | hypothetical protein | - |
| C9E56_RS13325 () | 2580574..2580999 | + | 426 | WP_000693878.1 | Rha family transcriptional regulator | - |
| C9E56_RS13330 () | 2581068..2582111 | + | 1044 | WP_001262402.1 | hypothetical protein | - |
| C9E56_RS13335 () | 2582104..2582565 | + | 462 | WP_000139447.1 | replication protein | - |
| C9E56_RS13340 () | 2582599..2583315 | + | 717 | WP_000450627.1 | DUF1627 domain-containing protein | - |
| C9E56_RS13345 () | 2583348..2583629 | + | 282 | WP_000603384.1 | DNA-binding protein | - |
| C9E56_RS13350 () | 2583626..2583853 | + | 228 | WP_000699809.1 | hypothetical protein | - |
| C9E56_RS13355 () | 2583846..2584157 | + | 312 | WP_001289673.1 | hypothetical protein | - |
| C9E56_RS13360 () | 2584285..2584503 | + | 219 | WP_000683609.1 | DUF4014 family protein | - |
| C9E56_RS13365 () | 2584505..2585062 | + | 558 | WP_000104474.1 | DUF551 domain-containing protein | - |
| - () | 2585283..2585341 | - | 59 | - | - | Antitoxin Detail |
| C9E56_RS13370 () | 2585353..2585508 | + | 156 | WP_000813258.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| C9E56_RS13375 () | 2585628..2585972 | + | 345 | WP_000756596.1 | YgiW/YdeI family stress tolerance OB fold protein | - |
| C9E56_RS13380 () | 2586094..2586366 | + | 273 | WP_000191872.1 | hypothetical protein | - |
| C9E56_RS13385 () | 2586368..2587417 | + | 1050 | WP_001265229.1 | DUF968 domain-containing protein | - |
| C9E56_RS13390 () | 2587430..2587735 | + | 306 | WP_001217444.1 | RusA family crossover junction endodeoxyribonuclease | - |
| C9E56_RS13395 () | 2587798..2588352 | + | 555 | WP_000640035.1 | DUF1133 family protein | - |
| C9E56_RS13400 () | 2588577..2588774 | + | 198 | WP_000917763.1 | hypothetical protein | - |
| C9E56_RS13405 () | 2588910..2589623 | + | 714 | WP_000301797.1 | helix-turn-helix domain-containing protein | - |
| C9E56_RS13420 () | 2590074..2590505 | + | 432 | WP_001302123.1 | tellurite resistance protein | - |
| C9E56_RS13425 () | 2590502..2590757 | + | 256 | Protein_2559 | DUF3927 family protein | - |
| C9E56_RS13430 () | 2590983..2592833 | + | 1851 | WP_000023184.1 | SASA family carbohydrate esterase | - |
| C9E56_RS13435 () | 2593273..2593488 | + | 216 | WP_024180155.1 | class II holin family protein | - |
| C9E56_RS13440 () | 2593493..2593837 | + | 345 | WP_000731259.1 | YdfR family protein | - |
| C9E56_RS13445 () | 2593888..2594421 | + | 534 | WP_000992137.1 | lysozyme | - |
| C9E56_RS13450 () | 2594692..2595261 | + | 570 | WP_001056806.1 | hypothetical protein | - |
| C9E56_RS13455 () | 2595261..2595407 | + | 147 | WP_000539795.1 | hypothetical protein | - |
| C9E56_RS13460 () | 2595630..2595815 | + | 186 | WP_001208680.1 | Rz1 family lipoprotein | - |
| C9E56_RS13465 () | 2596341..2596655 | + | 315 | WP_001302717.1 | PerC family transcriptional regulator | - |
| C9E56_RS13470 () | 2596737..2596961 | - | 225 | WP_001303940.1 | YlcI/YnfO family protein | - |
| C9E56_RS13480 () | 2597348..2597893 | + | 546 | WP_000867498.1 | terminase small subunit | - |
| C9E56_RS13485 () | 2597868..2599793 | + | 1926 | WP_024748469.1 | phage terminase large subunit family protein | - |
| C9E56_RS13490 () | 2599790..2599996 | + | 207 | WP_000198153.1 | gpW family protein | - |
| C9E56_RS13495 () | 2599993..2601594 | + | 1602 | WP_001301524.1 | phage portal protein | - |
| C9E56_RS13500 () | 2601575..2602894 | + | 1320 | WP_000123254.1 | S49 family peptidase | - |
| C9E56_RS13505 () | 2602904..2603236 | + | 333 | WP_001295978.1 | head decoration protein | - |
| C9E56_RS13510 () | 2603292..2604317 | + | 1026 | WP_024748468.1 | major capsid protein | - |
| C9E56_RS13515 () | 2604359..2604757 | + | 399 | WP_000158906.1 | DNA-packaging protein FI | - |
| C9E56_RS13520 () | 2604769..2605122 | + | 354 | WP_000753016.1 | head-tail joining protein | - |
| C9E56_RS13525 () | 2605137..2605670 | + | 534 | WP_000975020.1 | phage tail protein | - |
| C9E56_RS13530 () | 2605667..2606062 | + | 396 | WP_000683063.1 | phage minor tail U family protein | - |
| C9E56_RS13535 () | 2606070..2606822 | + | 753 | WP_000235090.1 | Ig domain-containing protein | - |
| C9E56_RS13540 () | 2606836..2607258 | + | 423 | WP_000479046.1 | phage minor tail protein G | - |
| C9E56_RS13545 () | 2607285..2607698 | + | 414 | WP_000533440.1 | phage tail assembly protein T | - |
| C9E56_RS13550 () | 2607679..2610291 | + | 2613 | WP_000081804.1 | phage tail tape measure protein | - |
| C9E56_RS13555 () | 2610288..2610617 | + | 330 | WP_000847298.1 | phage tail protein | - |
| C9E56_RS13560 () | 2610617..2611315 | + | 699 | WP_001151105.1 | phage minor tail protein L | - |
| C9E56_RS13565 () | 2611326..2612069 | + | 744 | WP_000194801.1 | C40 family peptidase | - |
| C9E56_RS13570 () | 2612015..2612647 | + | 633 | WP_129137391.1 | tail assembly protein | - |
| C9E56_RS13575 () | 2612894..2616373 | + | 3480 | WP_000514788.1 | host specificity protein J | - |
| C9E56_RS13580 () | 2616441..2617040 | + | 600 | WP_001230508.1 | Outer membrane protein X | VF |
| C9E56_RS13585 () | 2617105..2618418 | + | 1314 | WP_137049508.1 | ISNCY family transposase KIS | Transposase |
| C9E56_RS13590 () | 2618420..2618689 | + | 270 | WP_001023407.1 | phage tail fiber C-terminal domain-containing protein | - |
| C9E56_RS13595 () | 2618803..2619378 | + | 576 | WP_001131658.1 | hypothetical protein | VF |
| C9E56_RS13600 () | 2619451..2620080 | + | 630 | WP_001356599.1 | hypothetical protein | VF |
| C9E56_RS13605 () | 2620162..2620803 | + | 642 | WP_001143804.1 | hypothetical protein | VF |
| C9E56_RS13615 () | 2620965..2621207 | - | 243 | WP_001120551.1 | DinI-like family protein | - |
| C9E56_RS13620 () | 2621339..2622622 | + | 1284 | Protein_2596 | MHS family MFS transporter YdfJ | - |
| C9E56_RS13625 () | 2622711..2624171 | + | 1461 | WP_000527769.1 | mannitol dehydrogenase family protein | - |
| C9E56_RS13630 () | 2624207..2624410 | - | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| C9E56_RS13635 () | 2624587..2625273 | - | 687 | WP_000215549.1 | DNA-binding transcriptional regulator YdfH | - |
| C9E56_RS13640 () | 2625362..2626108 | - | 747 | WP_000636568.1 | NADP-dependent 3-hydroxy acid dehydrogenase YdfG | VF |
| C9E56_RS13645 () | 2626245..2628290 | + | 2046 | WP_001302117.1 | peptidyl-dipeptidase Dcp | - |
| C9E56_RS13650 () | 2628335..2628853 | - | 519 | WP_001024796.1 | 2-oxo-tetronate isomerase | - |
| C9E56_RS13655 () | 2629129..2629521 | + | 393 | WP_000671724.1 | YdeI family stress tolerance OB fold protein | - |
| C9E56_RS13660 () | 2629776..2630666 | + | 891 | WP_000592852.1 | diguanylate cyclase DgcZ | - |
| C9E56_RS28670 () | 2630781..2630885 | - | 105 | WP_211180496.1 | protein MgtT | - |
| C9E56_RS13665 () | 2630885..2630980 | - | 96 | WP_000901365.1 | protein MgtS | - |
| C9E56_RS13670 () | 2631088..2632059 | - | 972 | WP_001310251.1 | transcriptional regulator FtrA | - |
| C9E56_RS13675 () | 2632154..2632549 | + | 396 | WP_001271101.1 | rhodanese | - |
| C9E56_RS13680 () | 2632590..2633777 | - | 1188 | WP_001054199.1 | efflux MFS transporter YdeE | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|