MGE detailed information
MGE type: Prophage MGE length: 76254 bp
Accession: NZ_CP028470 Location: 1954824..2031077 Organism: Staphylococcus aureus strain IT4-R Replicon: chromosome
Accession: NZ_CP028470 Location: 1954824..2031077 Organism: Staphylococcus aureus strain IT4-R Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C5Y81_RS09825 () | 1951015..1953063 | - | 2049 | WP_000669724.1 | extracellular adherence protein Eap/Map | - |
| C5Y81_RS09830 () | 1953452..1953699 | + | 248 | Protein_1818 | sphingomyelin phosphodiesterase | - |
| C5Y81_RS09835 () | 1954021..1954200 | + | 180 | WP_000669789.1 | hypothetical protein | - |
| C5Y81_RS09845 () | 1954511..1954771 | + | 261 | WP_001791826.1 | hypothetical protein | - |
| C5Y81_RS09850 () | 1954824..1954967 | - | 144 | Protein_1821 | Staphylococcal complement inhibitor | VF |
| C5Y81_RS09855 () | 1955088..1956323 | + | 1236 | WP_001215400.1 | IS21 family transposase IS712 | Transposase |
| C5Y81_RS09860 () | 1956335..1957102 | + | 768 | WP_001095317.1 | IS21 family transposase IS712 | Transposase |
| C5Y81_RS09865 () | 1957165..1957377 | - | 213 | Protein_1824 | Staphylococcal complement inhibitor | VF |
| C5Y81_RS09870 () | 1958060..1958509 | + | 450 | WP_000727643.1 | Chemotaxis inhibitory protein | VF |
| C5Y81_RS09875 () | 1958602..1958936 | - | 335 | Protein_1826 | SH3 domain-containing protein | - |
| C5Y81_RS09895 () | 1959588..1960079 | - | 492 | WP_000920041.1 | Staphylokinase | VF |
| C5Y81_RS09900 () | 1960270..1961025 | - | 756 | WP_000861038.1 | CHAP domain-containing protein | - |
| C5Y81_RS09905 () | 1961037..1961291 | - | 255 | WP_000611512.1 | phage holin | - |
| C5Y81_RS09910 () | 1961343..1961450 | + | 108 | WP_031762631.1 | hypothetical protein | - |
| - () | 1961372..1961511 | + | 140 | NuclAT_0 | - | Antitoxin Detail |
| - () | 1961372..1961511 | + | 140 | NuclAT_0 | - | Antitoxin Detail |
| - () | 1961372..1961511 | + | 140 | NuclAT_0 | - | Antitoxin Detail |
| - () | 1961372..1961511 | + | 140 | NuclAT_0 | - | Antitoxin Detail |
| C5Y81_RS09915 () | 1961503..1961679 | - | 177 | WP_072357969.1 | putative holin-like toxin | Toxin Detail |
| C5Y81_RS09920 () | 1961831..1962127 | - | 297 | WP_000539688.1 | DUF2951 domain-containing protein | - |
| C5Y81_RS09925 () | 1962185..1962472 | - | 288 | WP_001040261.1 | hypothetical protein | - |
| C5Y81_RS09930 () | 1962519..1962671 | - | 153 | WP_001153681.1 | hypothetical protein | - |
| C5Y81_RS09935 () | 1962661..1966446 | - | 3786 | WP_000582165.1 | hypothetical protein | - |
| C5Y81_RS09940 () | 1966462..1967946 | - | 1485 | WP_110164476.1 | phage tail family protein | - |
| C5Y81_RS09945 () | 1967943..1972472 | - | 4530 | WP_001805631.1 | phage tail tape measure protein | - |
| C5Y81_RS09950 () | 1972717..1973067 | - | 351 | WP_001096355.1 | hypothetical protein | - |
| C5Y81_RS09955 () | 1973117..1973341 | - | 225 | WP_071621395.1 | Ig-like domain-containing protein | - |
| C5Y81_RS09960 () | 1973383..1974027 | - | 645 | WP_000268739.1 | phage tail protein | - |
| C5Y81_RS09965 () | 1974028..1974435 | - | 408 | WP_000565498.1 | hypothetical protein | - |
| C5Y81_RS09970 () | 1974432..1974836 | - | 405 | WP_000114225.1 | HK97 gp10 family phage protein | - |
| C5Y81_RS09975 () | 1974833..1975195 | - | 363 | WP_000755150.1 | head-tail adaptor protein | - |
| C5Y81_RS09980 () | 1975179..1975463 | - | 285 | WP_000150936.1 | phage head-tail adapter protein | - |
| C5Y81_RS09985 () | 1975453..1975737 | - | 285 | WP_000238236.1 | hypothetical protein | - |
| C5Y81_RS09990 () | 1975757..1976902 | - | 1146 | WP_000154555.1 | phage major capsid protein | - |
| C5Y81_RS09995 () | 1976926..1977663 | - | 738 | WP_000642728.1 | Clp protease ClpP | - |
| C5Y81_RS10000 () | 1977647..1978834 | - | 1188 | WP_000025274.1 | phage portal protein | - |
| C5Y81_RS10005 () | 1978850..1980511 | - | 1662 | WP_000625088.1 | terminase large subunit | - |
| C5Y81_RS10010 () | 1980508..1980852 | - | 345 | WP_000402904.1 | hypothetical protein | - |
| C5Y81_RS10015 () | 1980983..1981282 | - | 300 | WP_000988336.1 | HNH endonuclease | - |
| C5Y81_RS10020 () | 1981514..1981930 | - | 417 | WP_000590122.1 | hypothetical protein | - |
| C5Y81_RS10025 () | 1981958..1982158 | - | 201 | WP_001794311.1 | DUF1514 family protein | - |
| C5Y81_RS10030 () | 1982158..1982808 | - | 651 | WP_061385150.1 | hypothetical protein | - |
| C5Y81_RS10035 () | 1982967..1983116 | - | 150 | WP_000595265.1 | transcriptional activator RinB | - |
| C5Y81_RS10040 () | 1983113..1983499 | - | 387 | WP_061385151.1 | hypothetical protein | - |
| C5Y81_RS10045 () | 1983496..1983702 | - | 207 | WP_061385152.1 | DUF1381 domain-containing protein | - |
| C5Y81_RS10050 () | 1983739..1984272 | - | 534 | WP_061385153.1 | dUTP pyrophosphatase | - |
| C5Y81_RS10055 () | 1984265..1984513 | - | 249 | WP_061385154.1 | DUF1024 family protein | - |
| C5Y81_RS10060 () | 1984528..1984770 | - | 243 | WP_000131381.1 | phi PVL orf 51-like protein | - |
| C5Y81_RS10065 () | 1984774..1985142 | - | 369 | WP_000101270.1 | hypothetical protein | - |
| C5Y81_RS10070 () | 1985155..1985559 | - | 405 | WP_000401964.1 | RusA family crossover junction endodeoxyribonuclease | - |
| C5Y81_RS10075 () | 1985568..1985786 | - | 219 | WP_000338530.1 | hypothetical protein | - |
| C5Y81_RS10080 () | 1985793..1986677 | - | 885 | WP_031833239.1 | DnaD domain protein | - |
| C5Y81_RS10085 () | 1986707..1987177 | - | 471 | WP_000934764.1 | single-stranded DNA-binding protein | - |
| C5Y81_RS10090 () | 1987178..1987795 | - | 618 | WP_078158007.1 | MBL fold metallo-hydrolase | - |
| C5Y81_RS10095 () | 1987876..1988796 | - | 921 | WP_000138475.1 | recombinase RecT | - |
| C5Y81_RS10100 () | 1988798..1990741 | - | 1944 | WP_061736933.1 | AAA family ATPase | - |
| C5Y81_RS10105 () | 1990750..1991013 | - | 264 | WP_001205732.1 | hypothetical protein | - |
| C5Y81_RS10110 () | 1991022..1991282 | - | 261 | WP_000291503.1 | DUF1108 family protein | - |
| C5Y81_RS10115 () | 1991263..1991589 | - | 327 | WP_000165375.1 | DUF2482 family protein | - |
| C5Y81_RS10120 () | 1991684..1991845 | - | 162 | WP_000066017.1 | DUF1270 domain-containing protein | - |
| C5Y81_RS10125 () | 1991842..1992162 | - | 321 | WP_001120197.1 | DUF771 domain-containing protein | - |
| C5Y81_RS10130 () | 1992221..1992853 | + | 633 | WP_000275058.1 | hypothetical protein | - |
| C5Y81_RS10135 () | 1992868..1993008 | - | 141 | WP_000939496.1 | hypothetical protein | - |
| C5Y81_RS10140 () | 1993039..1993236 | - | 198 | WP_001148861.1 | hypothetical protein | - |
| C5Y81_RS10145 () | 1993252..1994001 | - | 750 | WP_001148337.1 | phage antirepressor KilAC domain-containing protein | - |
| C5Y81_RS10150 () | 1994058..1994597 | + | 540 | WP_061385157.1 | hypothetical protein | - |
| C5Y81_RS10155 () | 1994621..1994881 | - | 261 | WP_000435341.1 | transcriptional regulator | - |
| C5Y81_RS10160 () | 1994929..1995141 | - | 213 | WP_000213811.1 | helix-turn-helix transcriptional regulator | - |
| C5Y81_RS10165 () | 1995293..1996024 | + | 732 | WP_001566740.1 | XRE family transcriptional regulator | - |
| C5Y81_RS14545 () | 1996036..1996191 | + | 156 | WP_001049399.1 | hypothetical protein | - |
| C5Y81_RS10170 () | 1996178..1996363 | + | 186 | WP_001089804.1 | hypothetical protein | - |
| C5Y81_RS10175 () | 1996563..1996730 | + | 168 | WP_000705238.1 | hypothetical protein | - |
| C5Y81_RS10180 () | 1996870..1997574 | + | 705 | WP_017804779.1 | type II toxin-antitoxin system PemK/MazF family toxin | - |
| C5Y81_RS10185 () | 1997767..1998804 | + | 1038 | WP_000857200.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| C5Y81_RS10190 () | 1998855..1999685 | + | 831 | Protein_1887 | Phospholipase C | VF |
| C5Y81_RS10195 () | 1999923..2000939 | - | 1017 | WP_000595402.1 | putative leukocidin-like protein 1 | VF |
| C5Y81_RS10200 () | 2000961..2002013 | - | 1053 | WP_000791416.1 | putative leukocidin-like protein 2 | VF |
| C5Y81_RS10205 () | 2002448..2003671 | + | 1224 | WP_000206641.1 | ArgE/DapE family deacylase | - |
| C5Y81_RS10210 () | 2004096..2004887 | - | 792 | WP_110164477.1 | class I SAM-dependent methyltransferase | - |
| C5Y81_RS10215 () | 2004949..2005860 | - | 912 | WP_000825510.1 | Iron(3+)-hydroxamate-binding protein FhuD | VF |
| C5Y81_RS10220 () | 2006021..2007328 | + | 1308 | WP_001045063.1 | TrkH family potassium uptake protein | - |
| C5Y81_RS10230 () | 2008442..2009377 | + | 936 | WP_001239269.1 | TDT family transporter | - |
| C5Y81_RS10240 () | 2010232..2010459 | - | 228 | WP_000812237.1 | hypothetical protein | - |
| C5Y81_RS10245 () | 2010878..2011582 | + | 705 | WP_001035597.1 | Toxic shock syndrome toxin-1 | VF |
| C5Y81_RS10250 () | 2011737..2012306 | - | 570 | WP_001293073.1 | terminase small subunit | - |
| C5Y81_RS10255 () | 2012303..2012644 | - | 342 | WP_000358778.1 | hypothetical protein | - |
| C5Y81_RS10260 () | 2012647..2013174 | - | 528 | WP_052997658.1 | spore coat protein | - |
| C5Y81_RS10265 () | 2013225..2013443 | - | 219 | WP_000448775.1 | capsid morphogenesis B protein | - |
| C5Y81_RS10270 () | 2013461..2014039 | - | 579 | WP_000846285.1 | hypothetical protein | - |
| C5Y81_RS10275 () | 2014051..2014392 | - | 342 | WP_001190608.1 | hypothetical protein | - |
| C5Y81_RS10280 () | 2014928..2015569 | - | 642 | WP_001019766.1 | hypothetical protein | - |
| C5Y81_RS10285 () | 2015566..2015946 | - | 381 | WP_000356937.1 | hypothetical protein | - |
| C5Y81_RS10290 () | 2016258..2017967 | - | 1710 | WP_000447451.1 | DUF927 domain-containing protein | - |
| C5Y81_RS10295 () | 2017981..2018850 | - | 870 | WP_001002721.1 | primase alpha helix C-terminal domain-containing protein | - |
| C5Y81_RS10300 () | 2018914..2019231 | - | 318 | WP_001103930.1 | DUF1474 family protein | - |
| C5Y81_RS10305 () | 2019232..2019615 | - | 384 | WP_000403839.1 | hypothetical protein | - |
| C5Y81_RS10310 () | 2019617..2019820 | - | 204 | WP_001231378.1 | hypothetical protein | - |
| C5Y81_RS10315 () | 2019805..2019960 | - | 156 | WP_000708433.1 | hypothetical protein | - |
| C5Y81_RS10320 () | 2019957..2020274 | - | 318 | WP_000481967.1 | helix-turn-helix domain-containing protein | - |
| C5Y81_RS10325 () | 2020279..2020497 | - | 219 | WP_000153640.1 | helix-turn-helix transcriptional regulator | - |
| C5Y81_RS10330 () | 2020670..2021344 | + | 675 | WP_000620857.1 | helix-turn-helix transcriptional regulator | - |
| C5Y81_RS10335 () | 2021358..2022530 | + | 1173 | WP_000179345.1 | Transposase from transposon Tn916 ; Integrase | Integrase |
| C5Y81_RS10340 () | 2022599..2024215 | - | 1617 | WP_000240649.1 | 60 kDa chaperonin | VF |
| C5Y81_RS10345 () | 2024291..2024575 | - | 285 | WP_000917289.1 | co-chaperone GroES | - |
| C5Y81_RS10350 () | 2024752..2025495 | + | 744 | WP_000197645.1 | CPBP family intramembrane metalloprotease | - |
| C5Y81_RS10355 () | 2025520..2026779 | - | 1260 | WP_000120317.1 | hypothetical protein | VF |
| C5Y81_RS10360 () | 2026976..2027602 | + | 627 | WP_000522384.1 | nitroreductase family protein | - |
| C5Y81_RS10365 () | 2027872..2028657 | + | 786 | WP_000867943.1 | carbon-nitrogen family hydrolase | - |
| C5Y81_RS10370 () | 2029063..2029830 | - | 768 | WP_001095317.1 | IS21 family transposase IS712 | Transposase |
| C5Y81_RS10375 () | 2029842..2031077 | - | 1236 | WP_001215400.1 | IS21 family transposase IS712 | Transposase |
| C5Y81_RS10380 () | 2031459..2031593 | - | 135 | WP_001549197.1 | delta-lysin family phenol-soluble modulin | - |
| C5Y81_RS10385 () | 2031829..2032398 | + | 570 | WP_001105713.1 | accessory gene regulator AgrB | - |
| C5Y81_RS10390 () | 2032395..2032535 | + | 141 | WP_001093929.1 | cyclic lactone autoinducer peptide | - |
| C5Y81_RS10395 () | 2032560..2033852 | + | 1293 | WP_001670396.1 | GHKL domain-containing protein | - |
| C5Y81_RS10400 () | 2033871..2034587 | + | 717 | WP_054193544.1 | LytTR family DNA-binding domain-containing protein | - |
| C5Y81_RS10405 () | 2034659..2034766 | + | 108 | WP_031789494.1 | hypothetical protein | - |
| C5Y81_RS10410 () | 2034955..2035914 | - | 960 | WP_001253301.1 | carbohydrate kinase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|