MGE detailed information
MGE type: Prophage MGE length: 58233 bp
Accession: NZ_CP027355 Location: 956031..1014263 Organism: Escherichia coli strain 2013C-4991 Replicon: chromosome
Accession: NZ_CP027355 Location: 956031..1014263 Organism: Escherichia coli strain 2013C-4991 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C6P55_RS05295 () | 953406..955832 | - | 2427 | Protein_976 | dimethyl sulfoxide reductase subunit A | - |
| C6P55_RS05300 () | 956031..956336 | - | 306 | WP_001295396.1 | DUF1161 domain-containing protein | - |
| C6P55_RS05305 () | 956444..957154 | + | 711 | WP_072104773.1 | YnfC family lipoprotein | - |
| C6P55_RS05310 () | 957157..957717 | - | 561 | WP_001138584.1 | spermidine N1-acetyltransferase | - |
| C6P55_RS05315 () | 957752..958093 | - | 342 | WP_000705197.1 | DUF1283 family protein | - |
| C6P55_RS05320 () | 958228..958554 | + | 327 | WP_001295395.1 | YnfA family protein | - |
| C6P55_RS05330 () | 958760..959974 | + | 1215 | WP_001295394.1 | starvation-sensing protein RspA | - |
| C6P55_RS05335 () | 959986..961005 | + | 1020 | WP_000836059.1 | Zn-dependent oxidoreductase | - |
| C6P55_RS05345 () | 961193..962473 | - | 1281 | WP_000876958.1 | Tyrosine recombinase XerD ; Integrase | Integrase |
| C6P55_RS05350 () | 962508..962759 | - | 252 | WP_000005552.1 | excisionase family protein | - |
| C6P55_RS05355 () | 962832..965303 | - | 2472 | WP_106912704.1 | exonuclease | - |
| C6P55_RS05360 () | 965396..965587 | - | 192 | WP_001083297.1 | lysis protein YdfD | - |
| C6P55_RS05365 () | 965584..965772 | - | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| C6P55_RS05370 () | 966259..966834 | - | 576 | WP_000344926.1 | hypothetical protein | - |
| C6P55_RS05375 () | 966836..966991 | - | 156 | WP_000379589.1 | DUF1391 family protein | - |
| C6P55_RS05380 () | 967192..967599 | - | 408 | WP_001003381.1 | helix-turn-helix domain-containing protein | - |
| C6P55_RS05385 () | 967677..967904 | + | 228 | WP_000476993.1 | transcriptional regulator | - |
| C6P55_RS05390 () | 967888..968409 | + | 522 | WP_000705349.1 | hypothetical protein | - |
| C6P55_RS05395 () | 968390..969355 | + | 966 | WP_033803319.1 | phage O protein family | - |
| C6P55_RS05400 () | 969396..969818 | + | 423 | WP_033803318.1 | DUF977 family protein | - |
| C6P55_RS05405 () | 969815..970171 | + | 357 | WP_001310834.1 | class I SAM-dependent methyltransferase | - |
| C6P55_RS31175 () | 970782..971069 | + | 288 | Protein_997 | hypothetical protein | - |
| C6P55_RS05420 () | 971838..973151 | + | 1314 | WP_033803317.1 | ISNCY family transposase ISCARN112 | Transposase |
| C6P55_RS05430 () | 973588..973920 | - | 333 | WP_001301033.1 | protein FlxA | - |
| C6P55_RS05435 () | 974123..974428 | - | 306 | WP_001326990.1 | hypothetical protein | - |
| C6P55_RS05440 () | 974453..974692 | + | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| C6P55_RS05445 () | 974692..974979 | + | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| C6P55_RS05450 () | 975051..975206 | + | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| C6P55_RS05455 () | 975423..975674 | + | 252 | WP_000980994.1 | hypothetical protein | - |
| C6P55_RS05460 () | 975741..976019 | + | 279 | WP_012304870.1 | hypothetical protein | - |
| C6P55_RS05465 () | 976021..977070 | + | 1050 | WP_001265198.1 | DUF968 domain-containing protein | - |
| C6P55_RS05470 () | 977084..977836 | + | 753 | WP_001047135.1 | antitermination protein | - |
| C6P55_RS30790 () | 978114..978203 | - | 90 | WP_120795389.1 | hypothetical protein | - |
| C6P55_RS05475 () | 978258..978470 | - | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| C6P55_RS05480 () | 978771..978986 | + | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| C6P55_RS31365 () | 979350..979520 | - | 171 | WP_211180497.1 | putative zinc-binding protein YnfU | - |
| C6P55_RS05485 () | 979740..979955 | + | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| C6P55_RS05490 () | 979960..980271 | + | 312 | WP_000189916.1 | YdfR family protein | - |
| C6P55_RS05495 () | 980268..980801 | + | 534 | WP_001092971.1 | lysozyme | - |
| C6P55_RS05500 () | 980798..981295 | + | 498 | WP_001071769.1 | DUF2514 domain-containing protein | - |
| C6P55_RS05505 () | 981658..981870 | + | 213 | WP_000066495.1 | cold shock protein CspI | - |
| C6P55_RS05510 () | 981881..982069 | + | 189 | WP_071524604.1 | cold-shock protein | - |
| C6P55_RS30795 () | 982072..982137 | + | 66 | WP_120795388.1 | hypothetical protein | - |
| C6P55_RS30800 () | 982217..982372 | + | 156 | WP_001309517.1 | hypothetical protein | - |
| C6P55_RS05520 () | 982544..982717 | + | 174 | WP_001019606.1 | addiction module toxin, GnsA/GnsB family | - |
| C6P55_RS05530 () | 984130..984540 | - | 411 | WP_000373090.1 | DUF1398 domain-containing protein | - |
| C6P55_RS05535 () | 984598..984831 | - | 234 | WP_001368374.1 | YlcI/YnfO family protein | - |
| C6P55_RS05545 () | 985220..985765 | + | 546 | WP_000453603.1 | DNA-packaging protein | - |
| C6P55_RS05550 () | 985740..987665 | + | 1926 | WP_001549229.1 | phage terminase large subunit family protein | - |
| C6P55_RS05555 () | 987662..987868 | + | 207 | WP_000198149.1 | gpW family protein | - |
| C6P55_RS05560 () | 987865..989466 | + | 1602 | WP_001324962.1 | phage portal protein | - |
| C6P55_RS05565 () | 989447..990766 | + | 1320 | WP_000123333.1 | S49 family peptidase | - |
| C6P55_RS05570 () | 990776..991108 | + | 333 | WP_001549228.1 | head decoration protein | - |
| C6P55_RS05575 () | 991164..992189 | + | 1026 | WP_001552792.1 | major capsid protein | - |
| C6P55_RS05580 () | 992231..992626 | + | 396 | WP_000158895.1 | DNA-packaging protein FI | - |
| C6P55_RS05585 () | 992638..992991 | + | 354 | WP_000752960.1 | head-tail joining protein | - |
| C6P55_RS05590 () | 993003..993581 | + | 579 | WP_000985123.1 | phage tail protein | - |
| C6P55_RS05595 () | 993578..993973 | + | 396 | WP_106912646.1 | phage minor tail U family protein | - |
| C6P55_RS05600 () | 993981..994721 | + | 741 | WP_001439072.1 | phage tail protein | - |
| C6P55_RS05605 () | 994737..995159 | + | 423 | WP_033803353.1 | phage minor tail protein G | - |
| C6P55_RS05610 () | 995141..995575 | + | 435 | WP_000459480.1 | phage tail assembly protein T | - |
| C6P55_RS05615 () | 995568..998147 | + | 2580 | WP_106912647.1 | phage tail tape measure protein | - |
| C6P55_RS05620 () | 998144..998473 | + | 330 | WP_000847345.1 | phage tail protein | - |
| C6P55_RS05625 () | 998473..999171 | + | 699 | WP_001152612.1 | phage minor tail protein L | - |
| C6P55_RS05630 () | 999177..999920 | + | 744 | WP_032143059.1 | C40 family peptidase | - |
| C6P55_RS05635 () | 999857..1000462 | + | 606 | WP_159032749.1 | tail assembly protein | - |
| C6P55_RS05640 () | 1000523..1004002 | + | 3480 | WP_097549127.1 | host specificity protein J | - |
| C6P55_RS05645 () | 1004071..1004244 | + | 174 | Protein_1044 | Ail/Lom family outer membrane beta-barrel protein | - |
| C6P55_RS05650 () | 1004275..1005888 | - | 1614 | WP_000080195.1 | IS66 family transposase ISEc23 | Transposase |
| C6P55_RS05655 () | 1005919..1006269 | - | 351 | WP_000624722.1 | IS66 family transposase ISEc23 | Transposase |
| C6P55_RS05660 () | 1006266..1006691 | - | 426 | WP_000422741.1 | IS66 family transposase ISEc23 | Transposase |
| C6P55_RS05665 () | 1006761..1007210 | + | 450 | Protein_1048 | hypothetical protein | VF |
| C6P55_RS05670 () | 1007275..1010382 | + | 3108 | WP_077890157.1 | prophage tail fiber N-terminal domain-containing protein | - |
| C6P55_RS05675 () | 1010382..1010957 | + | 576 | WP_000885600.1 | tail fiber assembly protein | - |
| C6P55_RS05680 () | 1011055..1011645 | - | 591 | WP_000086522.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| C6P55_RS05685 () | 1011962..1012195 | - | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| C6P55_RS30805 () | 1012264..1012377 | - | 114 | WP_120795384.1 | hypothetical protein | - |
| C6P55_RS05695 () | 1012980..1014263 | + | 1284 | Protein_1054 | MHS family MFS transporter YdfJ | - |
| C6P55_RS05700 () | 1014352..1015812 | + | 1461 | WP_000527813.1 | mannitol dehydrogenase family protein | - |
| C6P55_RS05705 () | 1015848..1016051 | - | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| C6P55_RS05710 () | 1016228..1016914 | - | 687 | WP_000215549.1 | DNA-binding transcriptional regulator YdfH | - |
| C6P55_RS05715 () | 1017003..1017749 | - | 747 | WP_000636571.1 | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|