MGE detailed information
MGE type: IScluster/Tn MGE length: 30931 bp
Accession: NZ_CP026796 Location: 8381..39311 Organism: Shigella boydii strain ATCC BAA-1247 Replicon: plasmid unnamed
Accession: NZ_CP026796 Location: 8381..39311 Organism: Shigella boydii strain ATCC BAA-1247 Replicon: plasmid unnamed
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C5B80_RS26165 () | 4650..4835 | - | 186 | WP_171537368.1 | relaxase domain-containing protein | - |
| C5B80_RS24210 () | 5039..5266 | + | 228 | WP_000450530.1 | toxin-antitoxin system antitoxin VapB | - |
| C5B80_RS24215 () | 5266..5662 | + | 397 | Protein_3 | tRNA(fMet)-specific endonuclease VapC | - |
| C5B80_RS24220 () | 5671..7859 | - | 2189 | Protein_4 | type IV conjugative transfer system coupling protein TraD | - |
| C5B80_RS24225 () | 8107..8280 | + | 174 | Protein_5 | IS1 family transposase | - |
| C5B80_RS24230 () | 8381..9543 | + | 1163 | WP_201797329.1 | IS3 family transposase IS629 | Transposase |
| C5B80_RS24235 () | 9587..10116 | + | 530 | Protein_7 | IS1 family transposase IS1X2 | Transposase |
| C5B80_RS24240 () | 10132..10803 | + | 672 | Protein_8 | IS630 family transposase IS630 | Transposase |
| C5B80_RS24245 () | 10958..11902 | - | 945 | WP_012421740.1 | Lipid A biosynthesis myristoyltransferase 2 | VF |
| C5B80_RS24250 () | 11967..12917 | - | 951 | WP_012421771.1 | virulence factor VirK | - |
| C5B80_RS24255 () | 12922..14010 | - | 1089 | WP_005027207.1 | putative hexosyltransferase CapU | - |
| C5B80_RS24260 () | 14013..14855 | - | 843 | WP_000931198.1 | polysaccharide deacetylase family protein | - |
| C5B80_RS24265 () | 15219..15335 | - | 117 | WP_004996477.1 | hypothetical protein | - |
| C5B80_RS24270 () | 15542..16239 | + | 698 | Protein_14 | IS1 family transposase IS1X2 | Transposase |
| C5B80_RS24275 () | 16254..16739 | - | 486 | WP_000705603.1 | Protein kinase OspG | VF |
| C5B80_RS26275 () | 16768..16994 | - | 227 | Protein_16 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| C5B80_RS24285 () | 16991..17260 | - | 270 | WP_000079956.1 | hypothetical protein | - |
| C5B80_RS24290 () | 17468..19105 | - | 1638 | WP_012421769.1 | E3 ubiquitin-protein ligase ipaH9.8 | VF |
| C5B80_RS24295 () | 19367..19462 | - | 96 | Protein_19 | transposase domain-containing protein | - |
| C5B80_RS24300 () | 19498..19803 | - | 306 | WP_001159860.1 | type II toxin-antitoxin system toxin CcdB | Toxin Detail |
| C5B80_RS24305 () | 19805..20023 | - | 219 | WP_000813626.1 | type II toxin-antitoxin system antitoxin CcdA | Antitoxin Detail |
| C5B80_RS24315 () | 20616..20888 | + | 273 | WP_012421738.1 | hypothetical protein | - |
| C5B80_RS26280 () | 22229..22633 | - | 405 | WP_201797330.1 | hypothetical protein | - |
| C5B80_RS24330 () | 22955..23170 | - | 216 | Protein_25 | IS3 family transposase IS600 | Transposase |
| C5B80_RS24340 () | 23533..24282 | + | 750 | WP_000828661.1 | phosphatase PAP2 family protein | - |
| C5B80_RS24345 () | 24454..25298 | - | 845 | Protein_27 | IS5 family transposase ISSfl7 | Transposase |
| C5B80_RS24350 () | 25344..25709 | - | 366 | WP_073691780.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | - |
| C5B80_RS24355 () | 25802..27030 | + | 1229 | WP_167549350.1 | IS3 family transposase IS2 | Transposase |
| C5B80_RS24360 () | 27198..27593 | - | 396 | WP_000445931.1 | plasmid partitioning/stability family protein | - |
| C5B80_RS24365 () | 27593..28552 | - | 960 | WP_000921951.1 | plasmid segregation protein ParM | - |
| C5B80_RS24385 () | 29635..30803 | + | 1169 | WP_094096743.1 | IS3 family transposase ISLad1 | Transposase |
| C5B80_RS24390 () | 30814..31835 | + | 1022 | Protein_33 | IS3 family transposase IS629 | Transposase |
| C5B80_RS24395 () | 31879..32010 | - | 132 | Protein_34 | IS3 family transposase IS911 | Transposase |
| C5B80_RS24400 () | 32082..32372 | + | 291 | Protein_35 | reverse transcriptase | - |
| C5B80_RS24405 () | 32446..32565 | + | 120 | Protein_36 | transposase domain-containing protein | - |
| C5B80_RS24410 () | 32605..32913 | - | 309 | Protein_37 | IS1 family transposase IS1X2 | Transposase |
| C5B80_RS24415 () | 32950..34488 | - | 1539 | WP_134810431.1 | IS66 family transposase ISEc22 | Transposase |
| C5B80_RS24420 () | 34537..34884 | - | 348 | WP_000612626.1 | IS66 family transposase ISKpn24 | Transposase |
| C5B80_RS24425 () | 34881..35261 | - | 381 | WP_001333468.1 | IS66 family transposase ISEc8 | Transposase |
| C5B80_RS24430 () | 35354..35751 | - | 398 | Protein_41 | IS1 family transposase IS1F | Transposase |
| C5B80_RS24440 () | 35918..36118 | + | 201 | WP_134810432.1 | transposase | - |
| C5B80_RS24445 () | 36105..37757 | - | 1653 | WP_000612524.1 | bifunctional UDP-sugar hydrolase/5'-nucleotidase UshA | - |
| C5B80_RS24455 () | 39337..39760 | - | 424 | Protein_45 | fimbria/pilus outer membrane usher protein | - |
| C5B80_RS24460 () | 39946..43251 | - | 3306 | Protein_46 | outer membrane autotransporter IcsA | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|