MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 113130 bp
Accession: NZ_CP026789 Location: 1..113130 Organism: Shigella flexneri 2a strain ATCC 29903 Replicon: plasmid unnamed1
Accession: NZ_CP026789 Location: 1..113130 Organism: Shigella flexneri 2a strain ATCC 29903 Replicon: plasmid unnamed1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C1P79_RS23840 | 35..892 | + | 858 | WP_000130973.1 | incFII family plasmid replication initiator RepA | - |
| C1P79_RS23850 | 1593..1784 | + | 192 | WP_000829592.1 | hypothetical protein | - |
| C1P79_RS23860 | 3219..3407 | - | 189 | WP_000957853.1 | hypothetical protein | - |
| C1P79_RS23865 | 3553..3708 | + | 156 | Protein_5 | IS256 family transposase ISEc39 | Transposase |
| C1P79_RS23870 | 3738..5465 | - | 1728 | WP_000597731.1 | putative E3 ubiquitin-protein ligase ipaH7.8 | VF |
| C1P79_RS23875 | 5854..6120 | - | 267 | WP_000957716.1 | hypothetical protein | VF |
| C1P79_RS26530 | 6229..6359 | - | 131 | Protein_8 | IS1 family transposase | - |
| C1P79_RS26535 | 6357..6440 | + | 84 | Protein_9 | IS66 family insertion sequence element accessory protein TnpB | - |
| C1P79_RS23885 | 6959..7482 | + | 524 | Protein_10 | IS3 family transposase ISSfl11 | Transposase |
| C1P79_RS23890 | 7525..7863 | - | 339 | Protein_11 | IS3 family transposase IS629 | Transposase |
| C1P79_RS23895 | 7937..8919 | + | 983 | Protein_12 | IS3 family transposase IS911 | Transposase |
| C1P79_RS23900 | 9010..10238 | + | 1229 | WP_094081542.1 | IS3 family transposase IS2 | Transposase |
| C1P79_RS23905 | 10250..10441 | + | 192 | Protein_14 | IS3 family transposase | - |
| C1P79_RS23910 | 10465..11158 | - | 694 | Protein_15 | hypothetical protein | VF |
| C1P79_RS23915 | 11214..11366 | + | 153 | Protein_16 | integrase core domain-containing protein | - |
| C1P79_RS25715 | 11648..11785 | - | 138 | WP_011378983.1 | hypothetical protein | - |
| C1P79_RS23925 | 12747..13694 | + | 948 | WP_005061047.1 | Outer membrane protease IcsP | VF |
| C1P79_RS23935 | 14256..14628 | - | 373 | Protein_19 | IS3 family transposase IS2 | Transposase |
| C1P79_RS23945 | 14872..14991 | + | 120 | Protein_20 | Tn3 family transposase TnpA_ISNpu13 | Transposase |
| C1P79_RS23950 | 15241..16107 | + | 867 | WP_001046939.1 | hypothetical protein | VF |
| C1P79_RS23955 | 16436..17176 | + | 741 | WP_000850662.1 | PAP2 family phosphatase PhoN2 | - |
| C1P79_RS25720 | 17529..18983 | - | 1455 | Protein_23 | hypothetical protein | VF |
| C1P79_RS23970 | 19350..19867 | - | 518 | Protein_24 | IS66 family transposase zinc-finger binding domain-containing protein | - |
| C1P79_RS23975 | 19884..20120 | - | 237 | Protein_25 | IS3 family transposase ISSfl11 | Transposase |
| C1P79_RS23985 | 20171..21327 | - | 1157 | Protein_26 | IS3 family transposase IS600 | Transposase |
| C1P79_RS23990 | 21499..23208 | - | 1710 | WP_005061014.1 | hypothetical protein | VF |
| C1P79_RS23995 | 23640..24359 | - | 720 | WP_001121867.1 | Phosphothreonine lyase OspF | VF |
| C1P79_RS24000 | 24484..25040 | - | 557 | Protein_29 | ISL3 family transposase ISKox3 | Transposase |
| C1P79_RS24005 | 25024..25282 | + | 259 | Protein_30 | IS1 family transposase | - |
| C1P79_RS24010 | 25391..25969 | - | 579 | WP_000868563.1 | hypothetical protein | - |
| C1P79_RS26540 | 26018..26276 | - | 259 | Protein_32 | integrase core domain-containing protein | - |
| C1P79_RS24015 | 26390..26627 | - | 238 | Protein_33 | ATP-binding protein | - |
| C1P79_RS24020 | 26814..27243 | - | 430 | Protein_34 | IS91 family transposase ISEc37 | Transposase |
| C1P79_RS26545 | 27291..27476 | - | 186 | WP_000338649.1 | hypothetical protein | - |
| C1P79_RS25955 | 27639..27920 | + | 282 | Protein_36 | IS66 family transposase ISCro1 | Transposase |
| C1P79_RS24035 | 27934..29280 | - | 1347 | WP_011587243.1 | IS4 family transposase IS4 | Transposase |
| C1P79_RS24040 | 29350..29724 | + | 375 | Protein_38 | IS66 family transposase ISCro1 | Transposase |
| C1P79_RS24045 | 29724..30071 | + | 348 | WP_000622998.1 | IS66 family transposase ISCro1 | Transposase |
| C1P79_RS24050 | 30091..31320 | + | 1230 | Protein_40 | IS66 family transposase IS679 | Transposase |
| C1P79_RS24055 | 31324..31483 | + | 160 | Protein_41 | integrase core domain-containing protein | - |
| C1P79_RS26550 | 31726..31818 | - | 93 | Protein_42 | type III effector | - |
| C1P79_RS24060 | 32072..32370 | + | 299 | Protein_43 | IS256 family transposase IS1414 | Transposase |
| C1P79_RS24065 | 32452..32589 | + | 138 | Protein_44 | IS630 family transposase | - |
| C1P79_RS26040 | 32961..33637 | + | 677 | Protein_45 | hypothetical protein | VF |
| C1P79_RS25635 | 33961..34071 | + | 111 | Protein_46 | IS3 family transposase | - |
| C1P79_RS25960 | 34149..34463 | + | 315 | WP_011114726.1 | hypothetical protein | - |
| C1P79_RS24095 | 34745..35311 | + | 567 | WP_000901798.1 | hypothetical protein | VF |
| C1P79_RS26555 | 35573..35695 | - | 123 | Protein_49 | transposase domain-containing protein | - |
| C1P79_RS24105 | 35838..36392 | + | 555 | Protein_50 | IS3 family transposase IS3H | Transposase |
| C1P79_RS24110 | 36731..37092 | + | 362 | Protein_51 | IS1 family transposase IS1N | Transposase |
| C1P79_RS24120 | 37179..37856 | + | 678 | Protein_52 | IS21 family transposase IS100kyp | Transposase |
| C1P79_RS24125 | 37882..39075 | - | 1194 | WP_005064872.1 | IS4 family transposase ISSfl1 | Transposase |
| C1P79_RS24130 | 39155..39511 | + | 357 | Protein_54 | IS21 family transposase IS100kyp | Transposase |
| C1P79_RS24135 | 39508..40290 | + | 783 | WP_011114728.1 | IS21 family transposase IS100kyp | Transposase |
| C1P79_RS24140 | 40357..40695 | + | 339 | Protein_56 | IS1 family transposase | - |
| C1P79_RS26560 | 40709..40843 | + | 135 | Protein_57 | hypothetical protein | - |
| C1P79_RS24150 | 41017..42216 | + | 1200 | WP_000200287.1 | AAA family ATPase | - |
| C1P79_RS24155 | 42216..43196 | + | 981 | WP_000431558.1 | ParB family protein | - |
| C1P79_RS24160 | 43452..43937 | + | 486 | WP_000003223.1 | IS110 family transposase ISSde4 | Transposase |
| C1P79_RS24165 | 43964..44143 | - | 180 | Protein_61 | transposase domain-containing protein | - |
| C1P79_RS24170 | 44226..45353 | - | 1128 | WP_014526552.1 | group II intron reverse transcriptase/maturase | - |
| C1P79_RS26565 | 45275..45613 | + | 339 | WP_227804374.1 | hypothetical protein | - |
| C1P79_RS24180 | 45929..46108 | - | 180 | Protein_64 | IS66 family transposase | - |
| C1P79_RS24185 | 46145..47282 | - | 1138 | Protein_65 | IS3 family transposase | - |
| C1P79_RS24190 | 47339..47635 | - | 297 | Protein_66 | IS3 family transposase IS150 | Transposase |
| C1P79_RS24195 | 47751..47939 | + | 189 | WP_000957853.1 | hypothetical protein | - |
| C1P79_RS24200 | 47949..49148 | + | 1200 | WP_000947175.1 | IS91 family transposase | - |
| C1P79_RS24205 | 49321..50075 | - | 755 | Protein_69 | IS3 family transposase IS150 | Transposase |
| C1P79_RS24210 | 50086..50445 | + | 360 | Protein_70 | IS21 family transposase IS100 | Transposase |
| C1P79_RS24215 | 50438..50983 | - | 546 | Protein_71 | Virulence regulon transcriptional activator VirF | VF |
| C1P79_RS24220 | 51038..51735 | + | 698 | WP_223368647.1 | IS1 family transposase IS1X2 | Transposase |
| C1P79_RS24225 | 51751..52002 | - | 252 | Protein_73 | Virulence regulon transcriptional activator VirF | VF |
| C1P79_RS24230 | 52431..52832 | + | 402 | Protein_74 | integrase core domain-containing protein | - |
| C1P79_RS24235 | 53014..53280 | + | 267 | WP_000957712.1 | hypothetical protein | VF |
| C1P79_RS24240 | 53470..54167 | + | 698 | WP_223368647.1 | IS1 family transposase IS1X2 | Transposase |
| C1P79_RS24245 | 54428..55624 | - | 1197 | WP_005085088.1 | IS110 family transposase ISSfl4 | Transposase |
| C1P79_RS24250 | 55960..57651 | + | 1692 | WP_000597733.1 | putative E3 ubiquitin-protein ligase ipaH7.8 | VF |
| C1P79_RS24255 | 57703..58911 | + | 1209 | Protein_79 | IS3 family transposase | - |
| C1P79_RS24260 | 58954..59477 | - | 524 | Protein_80 | IS3 family transposase ISSfl11 | Transposase |
| C1P79_RS24265 | 59546..60028 | - | 483 | WP_000405245.1 | GNAT family N-acetyltransferase | Toxin Detail |
| C1P79_RS24270 | 60019..60321 | - | 303 | WP_010921625.1 | DUF1778 domain-containing protein | Antitoxin Detail |
| C1P79_RS24280 | 60593..60865 | + | 273 | WP_000019158.1 | hypothetical protein | - |
| C1P79_RS24285 | 60846..62054 | + | 1209 | WP_000198554.1 | IS91 family transposase | - |
| C1P79_RS25640 | 62226..62354 | + | 129 | Protein_85 | IS5 family transposase ISSfl7 | Transposase |
| C1P79_RS24300 | 62503..63957 | - | 1455 | WP_000701108.1 | hypothetical protein | VF |
| C1P79_RS24305 | 64361..64980 | + | 620 | Protein_87 | IS1 family transposase IS1X2 | Transposase |
| C1P79_RS24310 | 65030..66239 | + | 1210 | Protein_88 | IS3 family transposase | - |
| C1P79_RS24315 | 66283..66693 | + | 411 | Protein_89 | IS66 family transposase ISEc23 | Transposase |
| C1P79_RS24320 | 66725..67339 | + | 615 | Protein_90 | IS21 family transposase ISEc10 | Transposase |
| C1P79_RS24325 | 67508..71602 | - | 4095 | WP_001034121.1 | Serine protease SepA autotransporter | VF |
| C1P79_RS24330 | 72004..72192 | + | 189 | WP_047201489.1 | hypothetical protein | - |
| C1P79_RS24335 | 72202..73401 | + | 1200 | WP_000947175.1 | IS91 family transposase | - |
| C1P79_RS24345 | 73614..74422 | + | 809 | WP_094096897.1 | IS5 family transposase ISSfl7 | Transposase |
| C1P79_RS24350 | 74537..75568 | + | 1032 | WP_004998488.1 | IS630 family transposase IS630 | Transposase |
| C1P79_RS26570 | 75591..75683 | - | 93 | Protein_96 | hypothetical protein | - |
| C1P79_RS24360 | 75762..76452 | + | 691 | Protein_97 | IS1 family transposase | - |
| C1P79_RS24365 | 76469..76648 | - | 180 | Protein_98 | transposase | - |
| C1P79_RS24370 | 76977..78674 | + | 1698 | WP_010921637.1 | putative E3 ubiquitin-protein ligase ipaH7.8 | VF |
| C1P79_RS24375 | 79102..80826 | + | 1725 | WP_134801168.1 | putative E3 ubiquitin-protein ligase ipaH4.5 | VF |
| C1P79_RS24380 | 80878..82086 | + | 1209 | Protein_101 | IS3 family transposase | - |
| C1P79_RS25970 | 82130..82342 | - | 213 | Protein_102 | DDE-type integrase/transposase/recombinase | - |
| C1P79_RS24390 | 82617..82892 | + | 276 | WP_227804373.1 | S-type pyocin domain-containing protein | - |
| C1P79_RS24395 | 83090..84453 | + | 1364 | Protein_104 | MFS transporter | - |
| C1P79_RS24400 | 84503..84712 | + | 210 | Protein_105 | peptidoglycan-binding protein | - |
| C1P79_RS24405 | 84806..84997 | - | 192 | Protein_106 | IS21 family transposase IS100 | Transposase |
| C1P79_RS24410 | 85038..85535 | - | 498 | Protein_107 | IS66 family transposase ISEc47 | Transposase |
| C1P79_RS24420 | 85638..86846 | - | 1209 | Protein_108 | IS3 family transposase | - |
| C1P79_RS24430 | 87026..87760 | + | 735 | Protein_109 | IS21 family transposase IS100kyp | Transposase |
| C1P79_RS24435 | 88136..89344 | - | 1209 | WP_000198554.1 | IS91 family transposase | - |
| C1P79_RS24440 | 89325..89597 | - | 273 | WP_000019158.1 | hypothetical protein | - |
| C1P79_RS24450 | 89764..89883 | - | 120 | Protein_112 | IS66 family transposase ISCro1 | Transposase |
| C1P79_RS24460 | 90000..91697 | - | 1698 | WP_050197821.1 | hypothetical protein | VF |
| C1P79_RS24465 | 91773..91922 | + | 150 | Protein_114 | IS1 family transposase | - |
| C1P79_RS24470 | 92026..93438 | - | 1413 | WP_001026857.1 | hypothetical protein | VF |
| C1P79_RS24475 | 93888..93950 | + | 63 | Protein_116 | IS66 family transposase ISCro1 | Transposase |
| C1P79_RS24480 | 93971..94192 | - | 222 | Protein_117 | IS66 family transposase ISCro1 | Transposase |
| C1P79_RS24485 | 94335..94528 | - | 194 | Protein_118 | HNH endonuclease | - |
| C1P79_RS24495 | 95732..96205 | - | 474 | WP_005038443.1 | CFA/I fimbrial subunit D | VF |
| C1P79_RS24500 | 96456..97652 | + | 1197 | WP_005085088.1 | IS110 family transposase ISSfl4 | Transposase |
| C1P79_RS24505 | 97647..98071 | - | 425 | Protein_122 | hypothetical protein | - |
| C1P79_RS24510 | 98299..98937 | - | 639 | WP_000502854.1 | ParB N-terminal domain-containing protein | - |
| C1P79_RS24515 | 98922..99065 | - | 144 | Protein_124 | DUF3440 domain-containing protein | - |
| C1P79_RS24530 | 101647..101826 | + | 180 | Protein_127 | hypothetical protein | - |
| C1P79_RS24535 | 101835..102233 | - | 399 | WP_000911311.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| C1P79_RS24540 | 102233..102460 | - | 228 | WP_000450531.1 | toxin-antitoxin system antitoxin VapB | Antitoxin Detail |
| C1P79_RS24550 | 102542..107794 | + | 5253 | Protein_130 | Multifunctional conjugation protein TraI | Relaxase |
| C1P79_RS24555 | 107814..108560 | + | 747 | WP_000205722.1 | conjugal transfer pilus acetylase TraX | - |
| C1P79_RS24560 | 108615..109175 | + | 561 | WP_000139368.1 | fertility inhibition protein FinO | - |
| C1P79_RS24565 | 109306..109518 | + | 213 | WP_004971339.1 | ANR family transcriptional regulator | - |
| C1P79_RS24575 | 109762..110001 | + | 240 | Protein_134 | thermonuclease family protein | - |
| C1P79_RS24585 | 110045..111201 | - | 1157 | Protein_135 | IS3 family transposase | - |
| C1P79_RS24590 | 111227..111490 | + | 264 | Protein_136 | thermonuclease family protein | - |
| C1P79_RS24595 | 111536..111745 | + | 210 | WP_001299729.1 | hemolysin expression modulator Hha | - |
| C1P79_RS24600 | 111784..112374 | + | 591 | WP_000766818.1 | DUF2726 domain-containing protein | - |
| C1P79_RS24605 | 112614..112874 | + | 261 | WP_000083819.1 | replication regulatory protein RepA | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|