NZ_CP0267664369454..4521977

MGE detailed information

MGE type: Prophage        MGE length: 152524 bp
Accession: NZ_CP026766        Location: 4369454..4521977         Organism: Shigella boydii strain 59-248       Replicon: chromosome


Gene structure


The 5 kb flanking regions of this MGE are displayed.

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
C1P58_RS22615 () 4365343..4366173 + 831 Protein_4286 NapC/NirT family cytochrome c -
C1P58_RS22620 () 4366155..4367537 + 1383 Protein_4287 trimethylamine N-oxide reductase TorZ -
C1P58_RS22625 () 4367702..4368673 - 972 WP_000564746.1 tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB -
C1P58_RS22630 () 4368670..4369413 - 744 WP_073691384.1 carboxy-S-adenosyl-L-methionine synthase CmoA -
C1P58_RS22635 () 4369454..4369780 - 327 Protein_4290 MAPEG family protein -
C1P58_RS22640 () 4369855..4371023 + 1169 WP_134802478.1 IS3 family transposase ISLad1 Transposase
C1P58_RS26285 () 4371033..4371152 + 120 Protein_4292 peptidase -
C1P58_RS22650 () 4371149..4371373 + 225 WP_000620691.1 hypothetical protein -
C1P58_RS22655 () 4371370..4372194 + 825 Protein_4294 helix-turn-helix domain-containing protein -
C1P58_RS22660 () 4372191..4372679 + 489 Protein_4295 PerC family transcriptional regulator -
C1P58_RS22665 () 4372679..4373332 + 654 WP_000066914.1 phage N-6-adenine-methyltransferase -
C1P58_RS22670 () 4373329..4373718 + 390 WP_000767117.1 RusA family crossover junction endodeoxyribonuclease -
C1P58_RS22675 () 4373738..4374547 + 810 WP_073691281.1 KilA-N domain-containing protein -
C1P58_RS22680 () 4374555..4375544 + 990 Protein_4299 DUF968 domain-containing protein -
C1P58_RS22685 () 4375562..4375942 + 381 WP_001204806.1 antitermination protein Q -
C1P58_RS22690 () 4376158..4376398 + 241 Protein_4301 hypothetical protein -
C1P58_RS22695 () 4376506..4377555 + 1050 Protein_4302 site-specific DNA-methyltransferase -
C1P58_RS22725 () 4378358..4380319 + 1962 Protein_4303 DUF1737 domain-containing protein -
C1P58_RS22730 () 4380455..4380589 + 135 WP_000142784.1 DUF1378 family protein -
C1P58_RS22740 () 4381786..4382927 + 1142 Protein_4306 prolyl oligopeptidase family serine peptidase -
C1P58_RS22745 () 4382924..4383586 - 663 WP_000944260.1 exodeoxyribonuclease X -
C1P58_RS22750 () 4383610..4384266 - 657 WP_000011642.1 carbon-nitrogen hydrolase family protein -
C1P58_RS22755 () 4384368..4384598 - 231 WP_000916761.1 DNA polymerase III subunit theta -
C1P58_RS22760 () 4384737..4385111 + 375 WP_134802482.1 CopC domain-containing protein YobA -
C1P58_RS22765 () 4385115..4385987 + 873 WP_000879302.1 copper homeostasis membrane protein CopD -
C1P58_RS22770 () 4386000..4386341 + 342 WP_000976476.1 YebY family protein -
C1P58_RS22775 () 4386734..4387261 - 528 Protein_4313 hypothetical protein ; Integrase Integrase
C1P58_RS22785 () 4388694..4389796 + 1103 Protein_4315 IS3 family transposase IS600 Transposase
C1P58_RS22790 () 4389839..4390276 - 438 Protein_4316 phage integrase SAM-like domain-containing protein -
C1P58_RS22800 () 4391572..4391868 - 297 WP_001277359.1 host-nuclease inhibitor protein Gam -
C1P58_RS22805 () 4391996..4393576 - 1581 Protein_4319 exodeoxyribonuclease VIII -
C1P58_RS22810 () 4393641..4394815 + 1175 Protein_4320 IS3 family transposase ISSd1 Transposase
C1P58_RS22815 () 4394778..4395053 - 276 Protein_4321 exodeoxyribonuclease VIII -
C1P58_RS22820 () 4395153..4395427 - 275 Protein_4322 hypothetical protein -
C1P58_RS22825 () 4395512..4395703 - 192 WP_001098751.1 DUF1482 family protein -
C1P58_RS22830 () 4395700..4395888 - 189 WP_000449193.1 cell division inhibition protein DicB -
C1P58_RS22835 () 4395899..4396744 - 846 WP_134802483.1 Rha family phage regulatory protein -
C1P58_RS22845 () 4397136..4397690 - 555 Protein_4326 IS3 family transposase IS2 Transposase
C1P58_RS22850 () 4397699..4398055 + 357 Protein_4327 tail fiber assembly protein -
C1P58_RS22855 () 4398079..4399339 + 1261 Protein_4328 prophage tail fiber N-terminal domain-containing protein -
C1P58_RS26290 () 4399290..4399803 + 514 Protein_4329 DUF4376 domain-containing protein -
C1P58_RS22875 () 4401167..4402376 + 1210 Protein_4331 IS3 family transposase IS629 Transposase
C1P58_RS26295 () 4402490..4402669 + 180 WP_001039895.1 hypothetical protein -
C1P58_RS22885 () 4402670..4404385 - 1716 WP_134802485.1 hypothetical protein VF
C1P58_RS22890 () 4404672..4405101 + 430 Protein_4334 IS3 family transposase ISSd1 Transposase
C1P58_RS22895 () 4405152..4405849 + 698 Protein_4335 IS1 family transposase IS1X2 Transposase
C1P58_RS22900 () 4405889..4406008 - 120 Protein_4336 transposase domain-containing protein -
C1P58_RS22910 () 4406234..4407826 - 1593 WP_134802460.1 IS66 family transposase ISEc43 Transposase
C1P58_RS22915 () 4407857..4408207 - 351 WP_134802245.1 IS66 family transposase IS682 Transposase
C1P58_RS22920 () 4408204..4408623 - 420 WP_000435414.1 IS66 family transposase IS682 Transposase
C1P58_RS22925 () 4408711..4409112 - 402 Protein_4340 LysR family transcriptional regulator -
C1P58_RS22930 () 4409214..4410131 - 918 WP_001011461.1 nitrogen assimilation transcriptional regulator NAC -
C1P58_RS22940 () 4410589..4411524 - 936 WP_000986310.1 L,D-transpeptidase -
C1P58_RS22945 () 4411586..4412575 - 990 WP_073691406.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase -
C1P58_RS22950 () 4412587..4413330 - 744 WP_001297350.1 adenosylcobinamide-GDP ribazoletransferase -
C1P58_RS22955 () 4413327..4413872 - 546 WP_073691407.1 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase -
C1P58_RS22960 () 4414006..4414443 - 438 WP_073691408.1 cobalamin biosynthesis protein -
C1P58_RS22965 () 4414604..4415772 + 1169 WP_094113148.1 IS3 family transposase ISLad1 Transposase
C1P58_RS22970 () 4416177..4417088 - 912 WP_024258032.1 HTH-type transcriptional activator RhaR VF
C1P58_RS22975 () 4417145..4417842 + 698 Protein_4349 IS1 family transposase IS1X2 Transposase
C1P58_RS22980 () 4417835..4418248 + 414 WP_114142276.1 immunoglobulin domain-containing protein -
C1P58_RS22985 () 4418263..4418637 + 375 WP_000710952.1 phage tail assembly chaperone -
C1P58_RS22990 () 4418733..4418942 + 210 WP_128566924.1 DUF4035 domain-containing protein -
C1P58_RS22995 () 4418990..4419250 + 261 WP_000224021.1 hypothetical protein -
C1P58_RS23000 () 4419385..4420986 - 1602 WP_134802487.1 IS66 family transposase ISEc49 Transposase
C1P58_RS23005 () 4420993..4421385 - 393 WP_000950648.1 IS66 family transposase ISEc49 Transposase
C1P58_RS23015 () 4421746..4424055 + 2310 Protein_4356 phage tail tape measure protein -
C1P58_RS23020 () 4424071..4424768 - 698 Protein_4357 IS1 family transposase IS1X2 Transposase
C1P58_RS23025 () 4424824..4425783 + 960 Protein_4358 phage tail tape measure protein -
C1P58_RS23030 () 4425776..4426117 + 342 WP_000807924.1 phage tail protein -
C1P58_RS23035 () 4426117..4426815 + 699 WP_004983175.1 phage minor tail protein L -
C1P58_RS23040 () 4426826..4427569 + 744 WP_004983163.1 C40 family peptidase -
C1P58_RS23045 () 4427467..4428147 + 681 WP_012602254.1 tail assembly protein -
C1P58_RS23050 () 4428388..4431861 + 3474 WP_134802488.1 host specificity protein J -
C1P58_RS23055 () 4431929..4432528 + 600 WP_001233150.1 hypothetical protein VF
C1P58_RS23060 () 4432593..4434053 + 1461 WP_134802489.1 ISNCY family transposase KIS Transposase
C1P58_RS23065 () 4434139..4434651 + 513 WP_000539253.1 receptor recognizing protein Gp38 -
C1P58_RS23070 () 4434727..4434939 + 213 WP_073691637.1 DUF4376 domain-containing protein -
C1P58_RS23075 () 4435081..4435406 - 326 Protein_4368 YkgJ family cysteine cluster protein -
C1P58_RS23085 () 4435542..4435790 - 249 WP_001217553.1 DinI-like family protein -
C1P58_RS23095 () 4436145..4436492 - 348 Protein_4370 hydrolase -
C1P58_RS23100 () 4436519..4437715 - 1197 WP_134802454.1 IS110 family transposase ISEc20 Transposase
C1P58_RS23105 () 4437907..4438161 - 255 WP_000891627.1 isochorismatase family protein -
C1P58_RS23110 () 4438471..4440243 + 1773 WP_001258651.1 aspartate--tRNA ligase -
C1P58_RS23115 () 4440361..4440813 + 453 WP_011379170.1 dihydroneopterin triphosphate diphosphatase -
C1P58_RS23120 () 4440842..4441582 + 741 WP_000907247.1 transcriptional regulatory protein YebC VF
C1P58_RS23125 () 4441617..4442138 + 522 WP_001295503.1 crossover junction endodeoxyribonuclease RuvC -
C1P58_RS23130 () 4442260..4443458 + 1199 WP_134802490.1 IS3 family transposase ISLad1 Transposase
C1P58_RS23135 () 4443545..4443940 - 396 Protein_4378 IS1 family transposase IS1X2 Transposase
C1P58_RS23145 () 4445271..4445578 - 308 Protein_4380 IS1 family transposase -
C1P58_RS23150 () 4445770..4445835 + 66 WP_001386853.1 stress response small protein YobI -
C1P58_RS23155 () 4445974..4446585 + 612 WP_000580323.1 Holliday junction branch migration protein RuvA -
C1P58_RS23160 () 4446594..4447604 + 1011 WP_000568519.1 Holliday junction branch migration DNA helicase RuvB -
C1P58_RS23165 () 4447654..4448439 - 786 WP_000571484.1 hypothetical protein VF
C1P58_RS23170 () 4448436..4449191 - 756 WP_000202996.1 Vitamin B12 import ATP-binding protein BtuD VF
C1P58_RS23175 () 4449270..4450202 + 933 WP_073691176.1 zinc ABC transporter substrate-binding protein ZnuA -
C1P58_RS23180 () 4450218..4451540 + 1323 WP_001184045.1 murein DD-endopeptidase MepM -
C1P58_RS23185 () 4451660..4452631 + 972 WP_000448395.1 Lipid A biosynthesis myristoyltransferase VF
C1P58_RS23190 () 4452720..4454363 - 1644 Protein_4389 alpha-mannosidase -
C1P58_RS23195 () 4454420..4455117 + 698 Protein_4390 IS1 family transposase IS1X2 Transposase
C1P58_RS23200 () 4455128..4456565 - 1438 Protein_4391 hypothetical protein -
C1P58_RS23205 () 4456603..4458471 - 1869 WP_134802491.1 glycoside hydrolase family 127 protein -
C1P58_RS23210 () 4458560..4459369 - 810 WP_000581610.1 TrmB family transcriptional regulator -
C1P58_RS23215 () 4459775..4460650 - 876 Protein_4394 Vitamin B12 import ATP-binding protein BtuD VF
C1P58_RS23220 () 4460706..4461106 + 401 Protein_4395 IS1 family transposase IS1F Transposase
C1P58_RS23225 () 4461160..4462364 + 1205 WP_171765889.1 IS3 family transposase IS629 Transposase
C1P58_RS23230 () 4462405..4462707 + 303 Protein_4397 IS1 family transposase IS1X2 Transposase
C1P58_RS23235 () 4462725..4462964 - 240 Protein_4398 ATP-binding cassette domain-containing protein -
C1P58_RS23240 () 4462987..4463684 - 698 Protein_4399 IS1 family transposase IS1X2 Transposase
C1P58_RS23245 () 4463868..4464314 - 447 WP_004982928.1 YcgN family cysteine cluster protein -
C1P58_RS23250 () 4464406..4465065 - 660 WP_000284277.1 fumarylacetoacetate hydrolase family protein -
C1P58_RS23255 () 4465137..4465430 - 294 WP_001297679.1 YcgL domain-containing protein -
C1P58_RS23260 () 4465672..4466028 + 357 WP_000695219.1 PPC domain-containing protein -
C1P58_RS23265 () 4466039..4466736 - 698 Protein_4404 IS1 family transposase IS1X2 Transposase
C1P58_RS23270 () 4466791..4467540 + 750 WP_073832047.1 amidohydrolase family protein -
C1P58_RS23275 () 4467633..4468458 + 826 Protein_4406 alpha/beta hydrolase -
C1P58_RS23280 () 4468481..4469322 + 842 Protein_4407 Nif3-like dinuclear metal center hexameric protein -
C1P58_RS23285 () 4469382..4470824 - 1443 WP_000044415.1 pyruvate kinase -
C1P58_RS23290 () 4470952..4471821 - 870 WP_001056706.1 DNA-binding transcriptional regulator HexR -
C1P58_RS23295 () 4472159..4473634 + 1476 WP_000301720.1 glucose-6-phosphate dehydrogenase -
C1P58_RS23300 () 4473869..4475680 + 1812 WP_001069475.1 phosphogluconate dehydratase -
C1P58_RS23305 () 4475717..4476358 + 642 WP_001383094.1 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase -
C1P58_RS23310 () 4476414..4477592 - 1179 WP_000173486.1 formate-dependent phosphoribosylglycinamide formyltransferase -
C1P58_RS23315 () 4477726..4478020 + 295 Protein_4414 DNA damage-inducible protein YebG -
C1P58_RS23320 () 4478050..4478442 + 393 WP_000950671.1 protein YebF -
C1P58_RS23325 () 4478769..4479428 + 660 WP_000024738.1 tellurite resistance TerB family protein -
C1P58_RS23330 () 4479637..4480616 + 980 Protein_4417 oligopeptidase B -
C1P58_RS23345 () 4481880..4482757 - 878 Protein_4419 IS3 family transposase ISSd1 Transposase
C1P58_RS23355 () 4482813..4482935 + 123 Protein_4420 portal protein -
C1P58_RS23360 () 4482932..4483405 + 474 Protein_4421 IS3 family transposase ISEc52 Transposase
C1P58_RS23365 () 4483406..4484433 + 1028 Protein_4422 IS3 family transposase ISLad1 Transposase
C1P58_RS23370 () 4484596..4484805 + 210 WP_001044499.1 hypothetical protein -
C1P58_RS23375 () 4484833..4485198 + 366 WP_000253098.1 hypothetical protein -
C1P58_RS23380 () 4485211..4486815 + 1605 WP_000628841.1 hypothetical protein -
C1P58_RS23385 () 4487186..4487647 + 462 WP_000201268.1 hypothetical protein -
C1P58_RS23390 () 4487644..4487850 + 207 WP_000979502.1 helix-turn-helix domain-containing protein -
C1P58_RS23400 () 4488199..4488456 + 258 WP_000288814.1 antitoxin Antitoxin Detail
C1P58_RS23405 () 4488457..4488774 + 318 WP_000373726.1 type II toxin-antitoxin system PemK/MazF family toxin Toxin Detail
C1P58_RS23420 () 4489639..4490523 + 885 WP_000511770.1 Tyrosine recombinase XerC ; Integrase Integrase
C1P58_RS23435 () 4491235..4492497 - 1263 WP_073691628.1 hypothetical protein ; Integrase Integrase
C1P58_RS23445 () 4492739..4494382 + 1644 WP_128566925.1 toxic metabolite efflux MATE transporter YeeO -
C1P58_RS23455 () 4495014..4495730 - 717 WP_000532912.1 transcriptional regulatory protein YeeN VF
C1P58_RS23460 () 4496073..4496675 - 603 Protein_4434 AMP nucleosidase -
C1P58_RS23465 () 4496692..4497389 - 698 Protein_4435 IS1 family transposase IS1X2 Transposase
C1P58_RS23470 () 4497441..4498304 - 864 Protein_4436 AMP nucleosidase -
C1P58_RS23475 () 4498406..4498618 - 213 WP_073691684.1 serine transporter -
C1P58_RS23485 () 4499855..4500433 + 579 Protein_4439 ATP-binding protein -
C1P58_RS23490 () 4500603..4501157 - 555 Protein_4440 HTH-type transcriptional regulator Cbl -
C1P58_RS23495 () 4501189..4502781 - 1593 WP_134802460.1 IS66 family transposase ISEc43 Transposase
C1P58_RS23500 () 4502812..4503162 - 351 WP_134802245.1 IS66 family transposase IS682 Transposase
C1P58_RS23505 () 4503159..4503578 - 420 WP_000435414.1 IS66 family transposase IS682 Transposase
C1P58_RS23510 () 4503666..4504493 + 828 Protein_4444 IS3 family transposase ISSd1 Transposase
C1P58_RS23515 () 4504481..4504897 + 417 Protein_4445 serine/threonine-protein phosphatase -
C1P58_RS23520 () 4504898..4505089 - 192 WP_000457842.1 YebW family protein -
C1P58_RS23525 () 4505194..4505430 - 237 WP_001295499.1 DUF1480 family protein -
C1P58_RS23530 () 4505548..4506987 - 1440 WP_077897719.1 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF -
C1P58_RS23535 () 4507067..4509700 - 2634 WP_073691136.1 hypothetical protein VF
C1P58_RS23540 () 4509669..4510952 - 1284 WP_001397201.1 membrane integrity lipid transport subunit YebS -
C1P58_RS23545 () 4511082..4511579 + 498 WP_001043882.1 L-methionine (R)-S-oxide reductase -
C1P58_RS23550 () 4511676..4512374 + 699 WP_000431370.1 RNA chaperone ProQ -
C1P58_RS23555 () 4512394..4514442 + 2049 WP_073691134.1 carboxy terminal-processing peptidase -
C1P58_RS23560 () 4514634..4515515 + 882 WP_000984517.1 protease HtpX -
C1P58_RS23565 () 4515561..4516934 - 1374 WP_001127216.1 MFS transporter -
C1P58_RS23570 () 4517111..4517902 + 792 WP_001262182.1 DNA-binding transcriptional regulator KdgR -
C1P58_RS23575 () 4518045..4518284 - 240 WP_001211011.1 hypothetical protein -
C1P58_RS23580 () 4518443..4518586 + 144 WP_000714550.1 PhoP/PhoQ regulator MgrB -
C1P58_RS23585 () 4518661..4518948 + 288 WP_001006860.1 YebO family protein -
C1P58_RS23590 () 4519289..4519986 + 698 Protein_4460 IS1 family transposase IS1X2 Transposase
C1P58_RS23595 () 4520274..4520417 + 144 WP_001295496.1 YobF family protein -
C1P58_RS23600 () 4520566..4521774 + 1209 WP_001339197.1 IS4 family transposase IS10R Transposase
C1P58_RS23605 () 4521771..4521977 + 207 WP_097296722.1 cold shock-like protein CspC -
C1P58_RS23610 () 4522143..4522952 + 810 WP_000010115.1 23S rRNA (guanine(745)-N(1))-methyltransferase -
C1P58_RS23615 () 4522949..4523515 - 567 WP_001296134.1 manganese efflux pump MntP -
C1P58_RS23620 () 4523943..4524401 - 459 WP_000156260.1 DUF986 family protein -
C1P58_RS23625 () 4524456..4525307 - 852 WP_000228655.1 PTS mannose transporter subunit IID -
C1P58_RS23630 () 4525320..4526120 - 801 WP_000406926.1 PTS mannose transporter subunit IIC -

Similar MGE(s)


Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.

Detail Organism MGE type Related TA Genome accession Coordinates Mash
distance