MGE detailed information
MGE type: Genomic_island MGE length: 44845 bp
Accession: NZ_CP026647 Location: 327345..372189 Organism: Vibrio cholerae O1 biovar El Tor strain HC1037 Replicon: chromosome
Accession: NZ_CP026647 Location: 327345..372189 Organism: Vibrio cholerae O1 biovar El Tor strain HC1037 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C4E16_RS01450 () | 323719..324402 | - | 684 | WP_000841479.1 | MFS transporter | - |
| C4E16_RS01460 () | 324625..326304 | + | 1680 | WP_001139117.1 | SWIM zinc finger domain-containing protein | - |
| C4E16_RS01465 () | 326502..327011 | + | 510 | WP_001077909.1 | hypothetical protein | - |
| C4E16_RS01470 () | 327345..328049 | - | 705 | WP_001880605.1 | NERD domain-containing protein | - |
| C4E16_RS01475 () | 328119..331055 | - | 2937 | WP_001283872.1 | DEAD/DEAH box helicase family protein | - |
| C4E16_RS01480 () | 331059..331637 | - | 579 | WP_000109982.1 | class I SAM-dependent methyltransferase | - |
| C4E16_RS01485 () | 332065..332532 | - | 468 | WP_000804849.1 | helix-turn-helix domain-containing protein | Antitoxin Detail |
| C4E16_RS01490 () | 332529..333890 | - | 1362 | WP_000392003.1 | type II toxin-antitoxin system HipA family toxin | Toxin Detail |
| C4E16_RS01500 () | 334494..335471 | + | 978 | WP_001889101.1 | IS481-like element ISVch1 family transposase | - |
| C4E16_RS01505 () | 335497..336177 | - | 681 | Protein_287 | IS5 family transposase | - |
| C4E16_RS01510 () | 336519..338039 | - | 1521 | WP_000640055.1 | aldehyde dehydrogenase | - |
| C4E16_RS01515 () | 338219..341260 | + | 3042 | WP_001880619.1 | fibronectin type III domain-containing protein | - |
| C4E16_RS01520 () | 341373..345974 | + | 4602 | WP_000482254.1 | membrane protein | - |
| C4E16_RS01525 () | 345971..346909 | + | 939 | WP_001232137.1 | hypothetical protein | - |
| C4E16_RS01530 () | 347019..347513 | + | 495 | WP_000218964.1 | thiol peroxidase | - |
| C4E16_RS01535 () | 347789..349651 | - | 1863 | WP_000591844.1 | toxin-coregulated pilus methyl-accepting chemotaxis protein TcpI | - |
| C4E16_RS01540 () | 350093..350758 | + | 666 | WP_000542596.1 | toxin-coregulated pilus transcriptional regulator TcpP | - |
| C4E16_RS01545 () | 350743..351153 | + | 411 | WP_000549073.1 | toxin-coregulated pilus protein TcpH | - |
| C4E16_RS01550 () | 351697..352371 | + | 675 | WP_001176375.1 | toxin-coregulated pilus major pilin TcpA | - |
| C4E16_RS01555 () | 352451..353743 | + | 1293 | WP_001234004.1 | toxin-coregulated pilus minor pilin TcpB | - |
| C4E16_RS01560 () | 353743..354195 | + | 453 | WP_000742753.1 | toxin-coregulated pilus protein TcpQ | - |
| C4E16_RS01565 () | 354198..355667 | + | 1470 | WP_000750979.1 | toxin-coregulated pilus secretin TcpC | - |
| C4E16_RS01570 () | 355660..356115 | + | 456 | WP_000200904.1 | toxin-coregulated pilus protein TcpR | - |
| C4E16_RS01575 () | 356103..356939 | + | 837 | WP_001880631.1 | toxin-coregulated pilus protein TcpD | - |
| C4E16_RS01580 () | 356955..357413 | + | 459 | WP_001022338.1 | toxin-coregulated pilus protein TcpS | - |
| C4E16_RS01585 () | 357403..358914 | + | 1512 | WP_000020697.1 | toxin-coregulated pilus assembly ATPase TcpT | - |
| C4E16_RS01590 () | 358889..359911 | + | 1023 | WP_000691946.1 | toxin-coregulated pilus assembly protein TcpE | - |
| C4E16_RS01595 () | 359921..360937 | + | 1017 | WP_001269573.1 | colonization factor TcpF | - |
| C4E16_RS01600 () | 361144..361974 | + | 831 | WP_000579582.1 | pilus/toxin transcriptional regulator ToxT | - |
| C4E16_RS01605 () | 361974..362735 | + | 762 | WP_000456980.1 | toxin-coregulated pilus pre-pilin peptidase TcpJ | - |
| C4E16_RS01610 () | 362742..364622 | + | 1881 | WP_000672505.1 | methyl-accepting chemotaxis protein AcfB | - |
| C4E16_RS01615 () | 364628..365397 | + | 770 | Protein_309 | accessory colonization factor AcfC | - |
| C4E16_RS01620 () | 365413..365886 | + | 474 | WP_000287237.1 | RDD family protein | - |
| C4E16_RS01625 () | 365895..366803 | + | 909 | WP_001880634.1 | M23 family metallopeptidase | - |
| C4E16_RS01630 () | 366806..367453 | - | 648 | WP_001173022.1 | accessory colonization factor AcfA | - |
| C4E16_RS01635 () | 367627..372189 | + | 4563 | WP_000702220.1 | accessory colonization factor AcfD | - |
| C4E16_RS01640 () | 372820..373056 | - | 237 | WP_001919887.1 | tyrosine-type recombinase/integrase | - |
| C4E16_RS01645 () | 373699..374099 | - | 401 | Protein_315 | transposase | - |
| C4E16_RS01650 () | 374104..375372 | - | 1269 | WP_001107728.1 | tyrosine-type recombinase/integrase | - |
| C4E16_RS01660 () | 375974..376459 | - | 486 | WP_000162689.1 | SsrA-binding protein SmpB | - |
| C4E16_RS01665 () | 376643..377077 | + | 435 | WP_000815876.1 | type II toxin-antitoxin system RatA family toxin | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|