MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 90305 bp
Accession: NZ_CP025865 Location: 3861234..3951538 Organism: Escherichia coli strain 504211 Replicon: chromosome
Accession: NZ_CP025865 Location: 3861234..3951538 Organism: Escherichia coli strain 504211 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CXX09_RS18930 () | 3857032..3858306 | + | 1275 | WP_001107167.1 | histidine--tRNA ligase | - |
| CXX09_RS18935 () | 3858324..3858944 | + | 621 | WP_000409205.1 | ancillary SecYEG translocon subunit YfgM | - |
| CXX09_RS18940 () | 3858955..3860133 | + | 1179 | WP_001177043.1 | outer membrane protein assembly factor BamB | - |
| CXX09_RS18945 () | 3860251..3861723 | + | 1473 | WP_000249410.1 | ribosome biogenesis GTPase Der | - |
| CXX09_RS18950 () | 3861792..3862007 | + | 216 | WP_001297332.1 | zinc ribbon domain-containing protein | - |
| CXX09_RS18955 () | 3862004..3863374 | - | 1371 | WP_000937933.1 | exodeoxyribonuclease VII large subunit | - |
| CXX09_RS18960 () | 3863536..3865002 | + | 1467 | WP_001299507.1 | IMP dehydrogenase | - |
| CXX09_RS18965 () | 3865071..3866648 | + | 1578 | WP_000138282.1 | glutamine-hydrolyzing GMP synthase | - |
| CXX09_RS18970 () | 3866957..3868165 | + | 1209 | WP_001297323.1 | Prophage integrase IntA ; Integrase | Integrase |
| CXX09_RS18975 () | 3868448..3868678 | + | 231 | WP_021542196.1 | AlpA family phage regulatory protein | - |
| CXX09_RS18980 () | 3868759..3869817 | + | 1059 | WP_001297333.1 | replication initiator protein A | - |
| CXX09_RS26040 () | 3870147..3870383 | + | 237 | WP_187440167.1 | hypothetical protein | - |
| CXX09_RS18990 () | 3871124..3871432 | - | 309 | WP_001297325.1 | hypothetical protein | - |
| CXX09_RS18995 () | 3871599..3873098 | - | 1500 | WP_021542195.1 | P-type conjugative transfer protein TrbL | - |
| CXX09_RS19000 () | 3873140..3873322 | - | 183 | WP_024171813.1 | hypothetical protein | - |
| CXX09_RS19005 () | 3873325..3874116 | - | 792 | WP_001297334.1 | P-type conjugative transfer protein TrbJ | - |
| CXX09_RS19010 () | 3874387..3874611 | - | 225 | WP_001716819.1 | hypothetical protein | - |
| CXX09_RS19015 () | 3874614..3874823 | - | 210 | WP_000101768.1 | hypothetical protein | - |
| CXX09_RS19025 () | 3875560..3876636 | + | 1077 | WP_001297336.1 | SIR2 family protein | - |
| CXX09_RS19030 () | 3876644..3878434 | + | 1791 | WP_001297331.1 | ATP-binding protein | - |
| CXX09_RS19035 () | 3878496..3878693 | + | 198 | WP_001297329.1 | hypothetical protein | - |
| CXX09_RS19040 () | 3878887..3879072 | - | 186 | Protein_3633 | DUF5384 family protein | - |
| CXX09_RS19050 () | 3879159..3880181 | + | 1023 | WP_000255946.1 | IS21 family transposase IS100kyp | Transposase |
| CXX09_RS19055 () | 3880178..3880960 | + | 783 | WP_014640011.1 | IS21 family transposase IS100kyp | Transposase |
| CXX09_RS19065 () | 3881011..3881385 | - | 375 | WP_001716815.1 | DUF5384 family protein | - |
| CXX09_RS19070 () | 3881401..3881919 | - | 519 | WP_001295476.1 | glycine zipper 2TM domain-containing protein | - |
| CXX09_RS19075 () | 3882230..3882421 | - | 192 | WP_000076001.1 | DUF2633 family protein | - |
| CXX09_RS26045 () | 3882439..3882591 | + | 153 | WP_000017552.1 | hypothetical protein | - |
| CXX09_RS19080 () | 3882773..3885016 | + | 2244 | WP_000772775.1 | Cyclic di-GMP phosphodiesterase PdeF | VF |
| CXX09_RS19085 () | 3885055..3886596 | - | 1542 | WP_001121363.1 | exopolyphosphatase | - |
| CXX09_RS19090 () | 3886601..3888667 | - | 2067 | WP_000529576.1 | polyphosphate kinase 1 | - |
| CXX09_RS19095 () | 3888838..3889476 | - | 639 | WP_001028614.1 | phosphoribosylglycinamide formyltransferase | - |
| CXX09_RS19100 () | 3889476..3890513 | - | 1038 | WP_001295474.1 | Phosphoribosylformylglycinamidine cyclo-ligase | VF |
| CXX09_RS19105 () | 3890838..3891464 | + | 627 | WP_001295473.1 | uracil phosphoribosyltransferase | - |
| CXX09_RS19110 () | 3891550..3892839 | + | 1290 | WP_000198328.1 | uracil permease | - |
| CXX09_RS19115 () | 3892889..3893635 | + | 747 | WP_000247065.1 | DnaA inactivator Hda | - |
| CXX09_RS19120 () | 3893773..3894132 | - | 360 | WP_000166449.1 | arsenate reductase (glutaredoxin) | - |
| CXX09_RS19125 () | 3894153..3895616 | - | 1464 | WP_000489667.1 | beta-barrel assembly-enhancing protease | - |
| CXX09_RS19130 () | 3895829..3896890 | + | 1062 | WP_000892044.1 | AI-2E family transporter | - |
| CXX09_RS19135 () | 3896928..3897152 | - | 225 | WP_001330935.1 | formate/nitrite transporter family protein | - |
| CXX09_RS19140 () | 3897044..3897775 | - | 732 | WP_001244769.1 | formate transporter | - |
| CXX09_RS19145 () | 3897797..3899809 | - | 2013 | WP_001251558.1 | DNA-binding transcriptional activator HyfR | VF |
| CXX09_RS19150 () | 3899839..3900252 | - | 414 | WP_000796789.1 | hydrogenase 4 assembly chaperone HyfJ | - |
| CXX09_RS19155 () | 3900245..3901003 | - | 759 | WP_001297696.1 | hydrogenase 4 catalytic subunit HyfI | - |
| CXX09_RS19160 () | 3901000..3901539 | - | 540 | WP_000916082.1 | hydrogenase 4 subunit H | - |
| CXX09_RS19165 () | 3901549..3903264 | - | 1716 | WP_001297839.1 | hydrogenase 4 catalytic subunit HyfG | - |
| CXX09_RS19170 () | 3903254..3904833 | - | 1580 | Protein_3658 | hydrogenase 4 subunit F | - |
| CXX09_RS19175 () | 3904838..3905488 | - | 651 | WP_000147987.1 | hydrogenase 4 membrane subunit | - |
| CXX09_RS19180 () | 3905500..3906607 | - | 1108 | Protein_3660 | hydrogenase 4 subunit D | - |
| CXX09_RS19185 () | 3906619..3906729 | - | 111 | WP_000429115.1 | hypothetical protein | - |
| CXX09_RS19190 () | 3906746..3907690 | - | 945 | WP_001297317.1 | hydrogenase 4 subunit HyfC | - |
| CXX09_RS19195 () | 3907701..3909718 | - | 2018 | Protein_3663 | hydrogenase 4 subunit B | - |
| CXX09_RS19200 () | 3909718..3910335 | - | 618 | WP_001295470.1 | hydrogenase 4 subunit HyfA | - |
| CXX09_RS19205 () | 3910588..3911058 | - | 471 | WP_001068682.1 | thioredoxin-dependent thiol peroxidase | - |
| CXX09_RS19210 () | 3911058..3911630 | - | 573 | WP_000176187.1 | glycine cleavage system transcriptional repressor | - |
| CXX09_RS19215 () | 3911776..3912654 | + | 879 | WP_001295469.1 | 4-hydroxy-tetrahydrodipicolinate synthase | - |
| CXX09_RS19220 () | 3912671..3913705 | + | 1035 | WP_001297320.1 | outer membrane protein assembly factor BamC | - |
| CXX09_RS19225 () | 3913918..3914631 | + | 714 | WP_001295467.1 | phosphoribosylaminoimidazolesuccinocarboxamide synthase | - |
| CXX09_RS19230 () | 3914787..3915014 | + | 228 | WP_000450524.1 | toxin-antitoxin system antitoxin VapB | Antitoxin Detail |
| CXX09_RS19235 () | 3915014..3915412 | + | 399 | WP_000911329.1 | tRNA(fMet)-specific endonuclease VapC | Toxin Detail |
| CXX09_RS19240 () | 3915559..3916422 | + | 864 | WP_001267507.1 | neutral zinc metallopeptidase | - |
| CXX09_RS19245 () | 3916437..3918452 | + | 2016 | WP_000829332.1 | tRNA cytosine(34) acetyltransferase TmcA | - |
| CXX09_RS19250 () | 3918526..3919224 | + | 699 | WP_000679812.1 | esterase | - |
| CXX09_RS19255 () | 3919334..3919534 | - | 201 | WP_000383836.1 | YpfN family protein | - |
| CXX09_RS19260 () | 3919562..3920689 | - | 1128 | WP_001277809.1 | succinyl-diaminopimelate desuccinylase | - |
| CXX09_RS19265 () | 3920693..3921049 | - | 357 | WP_000258247.1 | ArsC family reductase | - |
| CXX09_RS19270 () | 3921430..3921489 | + | 60 | WP_001386977.1 | protein YpfM | - |
| CXX09_RS19275 () | 3921588..3924701 | - | 3114 | WP_001273141.1 | Multidrug efflux pump subunit AcrB | VF |
| CXX09_RS19280 () | 3924865..3926565 | - | 1701 | WP_000636129.1 | nitrate/nitrite two-component system sensor histidine kinase NarQ | - |
| CXX09_RS19285 () | 3926771..3928750 | + | 1980 | WP_024171812.1 | formate-dependent uric acid utilization protein AegA | - |
| CXX09_RS19290 () | 3928818..3929393 | + | 576 | WP_000193711.1 | GDP-mannose pyrophosphatase NudK | - |
| CXX09_RS19295 () | 3929519..3930562 | + | 1044 | WP_001270524.1 | DUF1176 domain-containing protein | - |
| CXX09_RS19300 () | 3930658..3932661 | - | 2004 | WP_001297319.1 | transketolase | - |
| CXX09_RS19305 () | 3932681..3933631 | - | 951 | WP_001716810.1 | transaldolase | - |
| CXX09_RS19310 () | 3933920..3936199 | + | 2280 | WP_000342642.1 | NADP-dependent oxaloacetate-decarboxylating malate dehydrogenase | - |
| CXX09_RS19315 () | 3936357..3937054 | + | 698 | Protein_3687 | IS1 family transposase IS1R | Transposase |
| CXX09_RS19320 () | 3937269..3937604 | + | 336 | WP_000356956.1 | ethanolamine utilization microcompartment protein EutS | - |
| CXX09_RS19325 () | 3937617..3938096 | + | 480 | WP_000820764.1 | ethanolamine utilization acetate kinase EutP | - |
| CXX09_RS19330 () | 3938071..3938772 | + | 702 | WP_000733906.1 | ethanolamine utilization acetate kinase EutQ | - |
| CXX09_RS19335 () | 3938769..3939572 | + | 804 | WP_000651298.1 | ethanolamine utilization cob(I)yrinic acid a,c-diamide adenosyltransferase EutT | - |
| CXX09_RS19340 () | 3939569..3940585 | + | 1017 | WP_000582977.1 | phosphate acetyltransferase | - |
| CXX09_RS19345 () | 3940624..3940917 | + | 294 | WP_000387713.1 | ethanolamine utilization microcompartment protein EutM | - |
| CXX09_RS19350 () | 3941024..3941311 | + | 288 | WP_000762196.1 | ethanolamine utilization microcompartment protein EutN | - |
| CXX09_RS19355 () | 3941323..3942732 | + | 1410 | WP_001075691.1 | Aldehyde-alcohol dehydrogenase | VF |
| CXX09_RS19360 () | 3942743..3943579 | + | 837 | WP_000929709.1 | ethanolamine utilization protein EutJ | - |
| CXX09_RS19365 () | 3943569..3944756 | + | 1188 | WP_001297322.1 | NAD-dependent methanol dehydrogenase | VF |
| CXX09_RS19370 () | 3944873..3946099 | + | 1227 | WP_000512374.1 | ethanolamine utilization protein EutH | - |
| CXX09_RS19375 () | 3946096..3947499 | + | 1404 | WP_001097450.1 | ethanolamine ammonia-lyase reactivating factor EutA | - |
| CXX09_RS19380 () | 3947511..3948872 | + | 1362 | WP_000769961.1 | ethanolamine ammonia-lyase subunit alpha | - |
| CXX09_RS19385 () | 3948893..3949780 | + | 888 | WP_000372364.1 | ethanolamine ammonia-lyase subunit beta | - |
| CXX09_RS19390 () | 3949790..3950449 | + | 660 | WP_001111038.1 | ethanolamine utilization microcompartment protein EutL | - |
| CXX09_RS19395 () | 3950462..3950962 | + | 501 | WP_000606257.1 | ethanolamine utilization microcompartment protein EutK | - |
| CXX09_RS19400 () | 3951008..3952060 | + | 1053 | WP_000753700.1 | HTH-type transcriptional regulator EutR | - |
| CXX09_RS19405 () | 3952066..3952965 | - | 900 | WP_000801367.1 | oxygen-dependent coproporphyrinogen oxidase | - |
| CXX09_RS19410 () | 3952969..3953838 | - | 870 | WP_000102891.1 | N-acetylmuramoyl-L-alanine amidase AmiA | - |
| CXX09_RS19415 () | 3954052..3954477 | + | 426 | WP_000406000.1 | GNAT family acetyltransferase | - |
| CXX09_RS19420 () | 3954464..3954913 | + | 450 | WP_001307326.1 | DUF2919 domain-containing protein | - |
| CXX09_RS19425 () | 3954974..3955549 | + | 576 | WP_000838945.1 | RpoE-regulated lipoprotein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|