MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 80090 bp
Accession: NZ_CP025003 Location: 595155..675244 Organism: Dickeya fangzhongdai strain DSM 101947 Replicon: chromosome
Accession: NZ_CP025003 Location: 595155..675244 Organism: Dickeya fangzhongdai strain DSM 101947 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CVE23_RS22615 () | 590485..591237 | + | 753 | WP_145958395.1 | hypothetical protein | - |
| CVE23_RS22620 () | 591277..592074 | + | 798 | WP_145958396.1 | hypothetical protein | - |
| CVE23_RS02790 () | 592646..592762 | + | 117 | Protein_535 | transposase | - |
| CVE23_RS02795 () | 592981..594003 | - | 1023 | WP_100848778.1 | IS110 family transposase | - |
| CVE23_RS02800 () | 594070..595064 | + | 995 | Protein_537 | IS3 family transposase | - |
| CVE23_RS02805 () | 595256..596161 | + | 906 | WP_100848828.1 | ParA family protein | - |
| CVE23_RS02810 () | 596235..596666 | - | 432 | WP_100848829.1 | hypothetical protein | - |
| CVE23_RS02815 () | 596894..597295 | + | 402 | WP_024109625.1 | hypothetical protein | - |
| CVE23_RS02820 () | 597288..598670 | + | 1383 | WP_100848830.1 | replicative DNA helicase | - |
| CVE23_RS02825 () | 598667..600415 | + | 1749 | WP_100848831.1 | ParB family protein | - |
| CVE23_RS02830 () | 600420..600692 | + | 273 | WP_145958397.1 | hypothetical protein | - |
| CVE23_RS02835 () | 600695..601306 | + | 612 | WP_024109629.1 | DUF2857 domain-containing protein | - |
| CVE23_RS02840 () | 601327..601578 | + | 252 | WP_100848833.1 | hypothetical protein | - |
| CVE23_RS02845 () | 601587..601769 | + | 183 | WP_100848834.1 | hypothetical protein | - |
| CVE23_RS02850 () | 601893..603113 | + | 1221 | WP_100848835.1 | helix-turn-helix domain-containing protein | - |
| CVE23_RS02855 () | 603381..604160 | + | 780 | WP_100848836.1 | TIGR03761 family integrating conjugative element protein | - |
| CVE23_RS02860 () | 604162..606168 | + | 2007 | WP_100848837.1 | DNA topoisomerase III | - |
| CVE23_RS02865 () | 606803..607291 | + | 489 | WP_100850393.1 | DUF3577 domain-containing protein | - |
| CVE23_RS02870 () | 607351..607899 | + | 549 | WP_024109635.1 | single-stranded DNA-binding protein | - |
| CVE23_RS22625 () | 607997..608521 | + | 525 | WP_145958398.1 | hypothetical protein | - |
| CVE23_RS02875 () | 608991..609422 | + | 432 | WP_024108354.1 | DUF29 domain-containing protein | - |
| CVE23_RS02880 () | 609563..610807 | + | 1245 | WP_100848838.1 | TcpQ domain-containing protein | - |
| CVE23_RS02885 () | 610809..611252 | + | 444 | WP_100848839.1 | type IV pilus biogenesis protein PilM | - |
| CVE23_RS02890 () | 611272..612945 | + | 1674 | WP_100848840.1 | PilN family type IVB pilus formation outer membrane protein | - |
| CVE23_RS02895 () | 612948..614228 | + | 1281 | WP_100848841.1 | type 4b pilus protein PilO2 | - |
| CVE23_RS02900 () | 614215..614712 | + | 498 | WP_100848842.1 | type IV pilus biogenesis protein PilP | - |
| CVE23_RS02905 () | 614722..616296 | + | 1575 | WP_100848843.1 | Flp pilus assembly complex ATPase component TadA | - |
| CVE23_RS02910 () | 616286..617401 | + | 1116 | WP_100848844.1 | type II secretion system F family protein | - |
| CVE23_RS02915 () | 617411..618007 | + | 597 | WP_100848845.1 | pilus assembly protein PilX | - |
| CVE23_RS02920 () | 618012..618491 | + | 480 | WP_100848846.1 | lytic transglycosylase domain-containing protein | - |
| CVE23_RS02925 () | 618488..619156 | + | 669 | WP_100848847.1 | A24 family peptidase | - |
| CVE23_RS02930 () | 619162..620406 | + | 1245 | WP_100850394.1 | shufflon system plasmid conjugative transfer pilus tip adhesin PilV | - |
| CVE23_RS02935 () | 621028..621846 | + | 819 | WP_145958399.1 | helix-turn-helix domain-containing protein | - |
| CVE23_RS02940 () | 621965..623173 | + | 1209 | WP_100848849.1 | conjugal transfer protein TraF | - |
| CVE23_RS02945 () | 623253..623657 | + | 405 | WP_100848850.1 | plasmid protein | - |
| CVE23_RS02950 () | 623880..624821 | + | 942 | WP_145958400.1 | hypothetical protein | - |
| CVE23_RS02955 () | 624832..625548 | + | 717 | WP_100848852.1 | TIGR03759 family integrating conjugative element protein | - |
| CVE23_RS02960 () | 625548..626129 | + | 582 | WP_100850395.1 | transglycosylase SLT domain-containing protein | - |
| CVE23_RS02965 () | 626126..626638 | + | 513 | WP_100848853.1 | integrating conjugative element protein | - |
| CVE23_RS02970 () | 626680..627225 | + | 546 | WP_100848854.1 | restriction endonuclease | - |
| CVE23_RS02975 () | 627222..629321 | + | 2100 | WP_100848855.1 | type IV conjugative transfer system coupling protein TraD | - |
| CVE23_RS02980 () | 629305..630063 | + | 759 | WP_100850396.1 | TIGR03747 family integrating conjugative element membrane protein | - |
| CVE23_RS02985 () | 630143..631147 | + | 1005 | WP_100848856.1 | IS110 family transposase | - |
| CVE23_RS02990 () | 631467..632894 | - | 1428 | WP_100848857.1 | hypothetical protein | - |
| CVE23_RS02995 () | 633473..633796 | + | 324 | WP_100848858.1 | hypothetical protein | - |
| CVE23_RS03000 () | 633796..634038 | + | 243 | WP_024109762.1 | TIGR03758 family integrating conjugative element protein | - |
| CVE23_RS03005 () | 634072..634419 | + | 348 | WP_100848859.1 | TIGR03745 family integrating conjugative element membrane protein | - |
| CVE23_RS03010 () | 634428..634796 | + | 369 | WP_100848860.1 | TIGR03750 family conjugal transfer protein | - |
| CVE23_RS03015 () | 634793..635449 | + | 657 | WP_100848861.1 | TIGR03746 family integrating conjugative element protein | - |
| CVE23_RS03020 () | 635491..636372 | + | 882 | WP_100848862.1 | TIGR03749 family integrating conjugative element protein | - |
| CVE23_RS03025 () | 636362..637903 | + | 1542 | WP_100848863.1 | TIGR03752 family integrating conjugative element protein | - |
| CVE23_RS03030 () | 637918..638322 | + | 405 | WP_100850397.1 | TIGR03751 family conjugal transfer lipoprotein | - |
| CVE23_RS03035 () | 638322..641168 | + | 2847 | WP_100848864.1 | conjugative transfer ATPase | - |
| CVE23_RS03040 () | 641165..641545 | + | 381 | Protein_586 | acetyltransferase | - |
| CVE23_RS22850 () | 641855..642025 | + | 171 | WP_167389536.1 | hypothetical protein | - |
| CVE23_RS03045 () | 642074..643306 | - | 1233 | WP_145958401.1 | hypothetical protein | - |
| CVE23_RS03055 () | 643510..643920 | + | 411 | WP_100848867.1 | TIGR03757 family integrating conjugative element protein | - |
| CVE23_RS03060 () | 643917..644888 | + | 972 | WP_100848868.1 | TIGR03756 family integrating conjugative element protein | - |
| CVE23_RS03065 () | 644900..646321 | + | 1422 | WP_100850398.1 | integrating conjugative element protein | - |
| CVE23_RS03070 () | 646333..646710 | + | 378 | WP_100848869.1 | hypothetical protein | - |
| CVE23_RS03075 () | 646707..648251 | + | 1545 | WP_024109779.1 | conjugal transfer protein TraG N-terminal domain-containing protein | - |
| CVE23_RS03080 () | 648288..648752 | - | 465 | WP_100848870.1 | hypothetical protein | - |
| CVE23_RS03085 () | 648953..649183 | + | 231 | WP_024109781.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | Antitoxin Detail |
| CVE23_RS03090 () | 649180..649596 | + | 417 | WP_100848871.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| CVE23_RS22630 () | 649933..650193 | + | 261 | WP_145958402.1 | hypothetical protein | - |
| CVE23_RS03095 () | 650506..650934 | + | 429 | WP_145958438.1 | DUF2726 domain-containing protein | - |
| CVE23_RS03100 () | 651997..652911 | + | 915 | WP_100848873.1 | integrase domain-containing protein | - |
| CVE23_RS03105 () | 653696..653965 | + | 270 | WP_145958403.1 | hypothetical protein | - |
| CVE23_RS03110 () | 654046..654378 | + | 333 | WP_100848875.1 | hypothetical protein | - |
| CVE23_RS03115 () | 654392..654625 | + | 234 | WP_024109656.1 | hypothetical protein | - |
| CVE23_RS22635 () | 654706..655029 | + | 324 | WP_145958404.1 | hypothetical protein | - |
| CVE23_RS03120 () | 655150..655770 | + | 621 | WP_100848876.1 | hypothetical protein | - |
| CVE23_RS03125 () | 655786..656265 | + | 480 | WP_167389537.1 | DNA repair protein RadC | - |
| CVE23_RS03130 () | 656362..656649 | + | 288 | WP_100848877.1 | TA system toxin CbtA family protein | - |
| CVE23_RS03135 () | 656742..657662 | + | 921 | WP_100848878.1 | DUF1281 domain-containing protein | - |
| CVE23_RS03145 () | 658090..658773 | + | 684 | WP_100848880.1 | type I restriction-modification system subunit M | - |
| CVE23_RS03150 () | 659073..660548 | + | 1476 | WP_100848881.1 | ATP-binding protein | - |
| CVE23_RS03155 () | 660639..661670 | - | 1032 | WP_100848882.1 | DUF4238 domain-containing protein | - |
| CVE23_RS03165 () | 662058..662882 | - | 825 | WP_100848883.1 | hypothetical protein | - |
| CVE23_RS03170 () | 663080..664015 | - | 936 | WP_100848884.1 | hypothetical protein | - |
| CVE23_RS03175 () | 664705..665643 | + | 939 | WP_100848885.1 | hypothetical protein | - |
| CVE23_RS03180 () | 665731..666213 | + | 483 | WP_100848886.1 | hypothetical protein | - |
| CVE23_RS03185 () | 666223..668226 | + | 2004 | WP_100848887.1 | AAA family ATPase | - |
| CVE23_RS03190 () | 668437..668631 | + | 195 | WP_100848888.1 | hypothetical protein | - |
| CVE23_RS03195 () | 668808..669077 | + | 270 | WP_145958405.1 | hypothetical protein | - |
| CVE23_RS03200 () | 669285..670394 | - | 1110 | WP_100848890.1 | DUF4935 domain-containing protein | - |
| CVE23_RS03205 () | 670735..672237 | + | 1503 | WP_100848891.1 | UvrD-helicase domain-containing protein | - |
| CVE23_RS03210 () | 672321..673916 | + | 1596 | WP_100848892.1 | TraI domain-containing protein | - |
| CVE23_RS03215 () | 674009..675031 | + | 1023 | WP_100848893.1 | site-specific integrase | - |
| CVE23_RS03225 () | 675466..676041 | - | 576 | WP_038917759.1 | transcriptional regulator | - |
| CVE23_RS03230 () | 676136..677866 | - | 1731 | WP_100848894.1 | protein-disulfide reductase DsbD | - |
| CVE23_RS03235 () | 677842..678222 | - | 381 | WP_071605148.1 | divalent cation tolerance protein CutA | - |
| CVE23_RS03240 () | 678337..679638 | - | 1302 | WP_038917762.1 | anaerobic C4-dicarboxylate transporter | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|