MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 92558 bp
Accession: NZ_CP023156 Location: 1..92558 Organism: Xanthomonas citri pv. malvacearum strain AR81009 Replicon: plasmid unnamed1
Accession: NZ_CP023156 Location: 1..92558 Organism: Xanthomonas citri pv. malvacearum strain AR81009 Replicon: plasmid unnamed1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CIW71_RS23870 () | 562..828 | - | 267 | Protein_1 | UPF0149 family protein | - |
| CIW71_RS23875 () | 847..3822 | - | 2976 | WP_033836402.1 | Tn3 family transposase TnpA_ISXc4 | Transposase |
| CIW71_RS23880 () | 3827..4246 | - | 420 | WP_005934465.1 | putative toxin-antitoxin system toxin component, PIN family | - |
| CIW71_RS23885 () | 4246..4485 | - | 240 | WP_005934467.1 | ribbon-helix-helix domain-containing protein | - |
| CIW71_RS23890 () | 4693..5616 | + | 924 | WP_005934469.1 | Tn3 family transposase TnpR_ISXc4 | Transposase |
| CIW71_RS23895 () | 5657..6198 | - | 542 | Protein_6 | IS3 family transposase ISXac2 | Transposase |
| CIW71_RS23900 () | 6368..7927 | + | 1560 | Protein_7 | Tn3 family transposase TnpA_TnXax1 | Transposase |
| CIW71_RS23905 () | 8060..9337 | + | 1278 | WP_005918469.1 | lytic murein transglycosylase | - |
| CIW71_RS23910 () | 9428..9859 | - | 432 | Protein_9 | avirulence protein | - |
| CIW71_RS23915 () | 9970..13053 | - | 3084 | WP_095702114.1 | TAL effector repeat-containing protein | - |
| CIW71_RS23930 () | 13834..17427 | - | 3594 | WP_095702115.1 | TAL effector repeat-containing protein | - |
| CIW71_RS23940 () | 17777..18037 | + | 261 | WP_005917852.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | Antitoxin Detail |
| CIW71_RS23945 () | 18034..18435 | + | 402 | WP_011053002.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| CIW71_RS23950 () | 18460..18723 | + | 264 | WP_005917846.1 | hypothetical protein | - |
| CIW71_RS23955 () | 18730..19917 | + | 1188 | WP_078566343.1 | zeta toxin family protein | - |
| CIW71_RS23960 () | 20197..21423 | + | 1227 | WP_033836457.1 | replication protein | - |
| CIW71_RS23970 () | 22079..23166 | + | 1088 | WP_089504470.1 | IS3 family transposase ISXac2 | Transposase |
| CIW71_RS23975 () | 23175..23594 | + | 420 | Protein_18 | hypothetical protein | - |
| CIW71_RS23980 () | 23642..26638 | - | 2997 | WP_078566280.1 | Tn3 family transposase TnpA_TnXax1 | Transposase |
| CIW71_RS23985 () | 26647..27921 | - | 1275 | WP_005923972.1 | Tn3 family transposase tnpS_TnXax1 | Transposase |
| CIW71_RS23990 () | 28105..29160 | + | 1056 | WP_033836455.1 | Tn3 family transposase tnpT_TnXax1 | Transposase |
| CIW71_RS24005 () | 30696..31376 | + | 681 | WP_078565925.1 | DNA-binding protein | - |
| CIW71_RS24010 () | 31496..32125 | + | 630 | WP_039583105.1 | AAA family ATPase | - |
| CIW71_RS24015 () | 32122..32358 | + | 237 | WP_015463816.1 | hypothetical protein | - |
| CIW71_RS24020 () | 32687..33843 | + | 1157 | WP_087942126.1 | IS3 family transposase ISXc8 | Transposase |
| CIW71_RS24025 () | 33849..34262 | + | 414 | Protein_27 | hypothetical protein | - |
| CIW71_RS24030 () | 34448..34732 | - | 285 | WP_003490829.1 | hypothetical protein | - |
| CIW71_RS24035 () | 35022..38006 | - | 2985 | WP_089504561.1 | Multifunctional conjugation protein TraI | Relaxase |
| CIW71_RS24040 () | 38020..39594 | - | 1575 | WP_089504560.1 | type IV secretion system DNA-binding domain-containing protein | - |
| CIW71_RS24045 () | 39735..40076 | - | 342 | WP_078566025.1 | hypothetical protein | - |
| CIW71_RS24050 () | 40275..40895 | - | 621 | WP_089504562.1 | hypothetical protein | - |
| CIW71_RS24055 () | 41112..44708 | + | 3597 | WP_089504558.1 | TAL effector repeat-containing protein | - |
| CIW71_RS24065 () | 46106..46306 | - | 201 | Protein_35 | IS3 family transposase IS1389-B | Transposase |
| CIW71_RS24070 () | 46447..47279 | + | 833 | Protein_36 | IS3 family transposase ISXac2 | Transposase |
| CIW71_RS24075 () | 47370..48410 | + | 1041 | WP_033474620.1 | IS21 family transposase ISRme20 | Transposase |
| CIW71_RS24080 () | 48410..49210 | + | 801 | WP_017154874.1 | IS21 family transposase ISRme20 | Transposase |
| CIW71_RS24085 () | 49286..49510 | + | 225 | Protein_39 | IS3 family transposase ISXac2 | Transposase |
| CIW71_RS24090 () | 49549..50175 | + | 627 | Protein_40 | IS3 family transposase ISXac2 | Transposase |
| CIW71_RS24095 () | 50428..50721 | - | 294 | WP_005931751.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| CIW71_RS24100 () | 50718..50987 | - | 270 | WP_003490597.1 | hypothetical protein | - |
| CIW71_RS24105 () | 51083..51478 | - | 396 | WP_005931747.1 | hypothetical protein | - |
| CIW71_RS24110 () | 51828..52274 | + | 447 | WP_033480397.1 | hypothetical protein | - |
| CIW71_RS24115 () | 52271..52978 | + | 708 | WP_005931741.1 | hypothetical protein | - |
| CIW71_RS24120 () | 53027..53380 | + | 354 | WP_039447645.1 | hypothetical protein | - |
| CIW71_RS24125 () | 53787..54023 | - | 237 | WP_078565910.1 | hypothetical protein | - |
| CIW71_RS24130 () | 54020..54649 | - | 630 | WP_078565908.1 | AAA family ATPase | - |
| CIW71_RS24145 () | 55474..56106 | + | 633 | WP_078565906.1 | ParA family protein | - |
| CIW71_RS25355 () | 56099..56449 | + | 351 | WP_078565904.1 | hypothetical protein | - |
| CIW71_RS24155 () | 57179..58000 | - | 822 | WP_078565902.1 | hypothetical protein | - |
| CIW71_RS24165 () | 58544..62038 | + | 3495 | WP_089504556.1 | TAL effector repeat-containing protein | - |
| CIW71_RS25360 () | 62149..62622 | - | 474 | Protein_53 | Avirulence protein AvrBs3 | - |
| CIW71_RS24175 () | 62982..63782 | - | 801 | WP_017154874.1 | IS21 family transposase ISRme20 | Transposase |
| CIW71_RS24180 () | 63782..64822 | - | 1041 | WP_033474620.1 | IS21 family transposase ISRme20 | Transposase |
| CIW71_RS24185 () | 64821..65027 | + | 207 | WP_095702116.1 | hypothetical protein | - |
| CIW71_RS24190 () | 65075..66294 | + | 1220 | WP_089504418.1 | IS3 family transposase ISAzsp1 | Transposase |
| CIW71_RS24195 () | 66329..66610 | + | 282 | Protein_58 | hypothetical protein | - |
| CIW71_RS24200 () | 66658..67197 | + | 540 | WP_078565982.1 | plasmid pRiA4b ORF-3 family protein | - |
| CIW71_RS24205 () | 67250..67924 | - | 675 | WP_017113468.1 | NYN domain-containing protein | - |
| CIW71_RS24210 () | 68133..68522 | + | 390 | WP_003490639.1 | hypothetical protein | - |
| CIW71_RS24215 () | 69033..69854 | + | 822 | WP_080575193.1 | hypothetical protein | - |
| CIW71_RS24220 () | 70048..71135 | + | 1088 | WP_089504397.1 | IS3 family transposase ISXac2 | Transposase |
| CIW71_RS24225 () | 71158..71709 | + | 552 | Protein_64 | IS3 family transposase ISXac2 | Transposase |
| CIW71_RS24230 () | 71844..75644 | - | 3801 | WP_089504555.1 | TAL effector repeat-containing protein | - |
| CIW71_RS25040 () | 75846..76079 | - | 234 | WP_154138588.1 | hypothetical protein | - |
| CIW71_RS24240 () | 76124..76432 | - | 309 | WP_005918382.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| CIW71_RS24245 () | 76453..76917 | - | 465 | WP_005918380.1 | hypothetical protein | - |
| CIW71_RS24250 () | 77128..77679 | + | 552 | WP_005918378.1 | Tn3 family transposase TnBth3 | Transposase |
| CIW71_RS24255 () | 77727..77933 | - | 207 | WP_078566330.1 | antitoxin VbhA family protein | - |
| CIW71_RS24260 () | 77949..78755 | - | 807 | WP_005918374.1 | hypothetical protein | - |
| CIW71_RS24265 () | 78772..78987 | - | 216 | WP_005918372.1 | chromosome partitioning protein ParB | - |
| CIW71_RS24270 () | 79000..79629 | - | 630 | WP_005918369.1 | AAA family ATPase | - |
| CIW71_RS24275 () | 79783..79968 | - | 186 | WP_033837725.1 | hypothetical protein | - |
| CIW71_RS24280 () | 80094..84098 | - | 4005 | WP_095702117.1 | TAL effector repeat-containing protein | - |
| CIW71_RS24290 () | 84300..84833 | - | 534 | WP_089504552.1 | TAL effector repeat-containing protein | - |
| CIW71_RS24300 () | 86267..87354 | + | 1088 | WP_089504397.1 | IS3 family transposase ISXac2 | Transposase |
| CIW71_RS24305 () | 87616..88863 | - | 1248 | WP_078566285.1 | replication initiation protein | - |
| CIW71_RS24310 () | 89111..89425 | - | 315 | WP_005918227.1 | hypothetical protein | - |
| CIW71_RS24315 () | 89570..89893 | - | 324 | WP_005918229.1 | hypothetical protein | - |
| CIW71_RS24320 () | 89890..90516 | - | 627 | WP_005918230.1 | Chromosome-partitioning ATPase Soj | VF |
| CIW71_RS25365 () | 90685..90822 | + | 138 | WP_005918231.1 | hypothetical protein | - |
| CIW71_RS25045 () | 91149..91331 | - | 183 | Protein_84 | IS3 family transposase ISXac2 | Transposase |
| CIW71_RS24340 () | 91375..91809 | - | 435 | Protein_85 | UPF0149 family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|