MGE detailed information
MGE type: Genomic_island MGE length: 42348 bp
Accession: NZ_CP021840 Location: 1921568..1963915 Organism: Escherichia coli strain EC974 Replicon: chromosome
Accession: NZ_CP021840 Location: 1921568..1963915 Organism: Escherichia coli strain EC974 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CDH88_RS09665 () | 1917975..1918694 | - | 720 | WP_000611288.1 | two-component system response regulator DcuR | - |
| CDH88_RS09670 () | 1918691..1920322 | - | 1632 | WP_001216477.1 | sensor histidine kinase | - |
| CDH88_RS09675 () | 1920503..1920733 | + | 231 | WP_000371704.1 | (4Fe-4S)-binding protein | - |
| CDH88_RS09680 () | 1920745..1921017 | + | 273 | WP_000405647.1 | N-acetyltransferase | - |
| CDH88_RS09690 () | 1921244..1921540 | + | 297 | WP_000398619.1 | type V toxin-antitoxin system endoribonuclease antitoxin GhoS | - |
| CDH88_RS09695 () | 1921568..1921741 | + | 174 | WP_001173343.1 | type V toxin-antitoxin system toxin GhoT | - |
| CDH88_RS09700 () | 1921860..1923377 | - | 1518 | WP_001295074.1 | lysine--tRNA ligase | - |
| CDH88_RS09705 () | 1923614..1925071 | - | 1458 | WP_000856835.1 | dipeptide/tripeptide permease DtpC | - |
| CDH88_RS09710 () | 1925130..1927277 | - | 2148 | WP_001295383.1 | lysine decarboxylase CadA | - |
| CDH88_RS09715 () | 1927357..1928691 | - | 1335 | WP_000092909.1 | cadaverine/lysine antiporter | - |
| CDH88_RS09725 () | 1929057..1930595 | - | 1539 | WP_088172268.1 | lysine decarboxylation/transport transcriptional activator CadC | - |
| CDH88_RS09735 () | 1931478..1931804 | - | 327 | WP_000779482.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| CDH88_RS09740 () | 1931801..1932064 | - | 264 | WP_001143297.1 | type II toxin-antitoxin system ParD family antitoxin | - |
| CDH88_RS09745 () | 1932136..1933002 | - | 867 | WP_039023551.1 | DUF4942 domain-containing protein | - |
| CDH88_RS09750 () | 1933087..1933284 | - | 198 | WP_088172489.1 | DUF957 domain-containing protein | - |
| CDH88_RS28105 () | 1933339..1933509 | - | 171 | Protein_1774 | hypothetical protein | - |
| CDH88_RS09755 () | 1933506..1933883 | - | 378 | WP_039023548.1 | TA system toxin CbtA family protein | Toxin Detail |
| CDH88_RS09760 () | 1933973..1934341 | - | 369 | WP_001285607.1 | type IV toxin-antitoxin system YeeU family antitoxin | Antitoxin Detail |
| CDH88_RS09765 () | 1934421..1934642 | - | 222 | WP_000692350.1 | DUF987 domain-containing protein | - |
| CDH88_RS09770 () | 1934729..1935205 | - | 477 | WP_001384029.1 | RadC family protein | - |
| CDH88_RS09775 () | 1935220..1935705 | - | 486 | WP_000213722.1 | antirestriction protein | - |
| CDH88_RS09780 () | 1935797..1936615 | - | 819 | WP_001175175.1 | DUF945 domain-containing protein | - |
| CDH88_RS09785 () | 1936705..1936914 | - | 210 | WP_032150870.1 | DUF905 family protein | - |
| CDH88_RS09790 () | 1936944..1937621 | - | 678 | WP_001097301.1 | hypothetical protein | - |
| CDH88_RS09795 () | 1937769..1938449 | - | 681 | WP_001282919.1 | WYL domain-containing protein | - |
| CDH88_RS09800 () | 1938652..1939536 | - | 885 | WP_000010408.1 | 50S ribosome-binding GTPase | - |
| CDH88_RS09805 () | 1939721..1940851 | + | 1131 | WP_047928958.1 | hypothetical protein | - |
| CDH88_RS09810 () | 1942351..1943082 | + | 732 | WP_021559487.1 | inovirus Gp2 family protein | - |
| CDH88_RS09815 () | 1943603..1944085 | - | 483 | WP_001605868.1 | hypothetical protein | - |
| CDH88_RS09820 () | 1944970..1946487 | + | 1518 | WP_032147601.1 | hypothetical protein | - |
| CDH88_RS09825 () | 1946629..1947787 | - | 1159 | Protein_1789 | IS30 family transposase | - |
| CDH88_RS09830 () | 1948103..1950736 | + | 2634 | WP_021536679.1 | restriction endonuclease | - |
| CDH88_RS09835 () | 1951093..1952064 | - | 972 | WP_021536680.1 | IS481 family transposase ISEc18 | Transposase |
| CDH88_RS09840 () | 1953139..1953705 | + | 567 | WP_001126820.1 | inovirus-type Gp2 protein | - |
| CDH88_RS09845 () | 1953953..1954528 | + | 576 | WP_061323289.1 | hypothetical protein | - |
| CDH88_RS09850 () | 1954597..1954833 | + | 237 | WP_000958149.1 | AlpA family transcriptional regulator | - |
| CDH88_RS28440 () | 1954830..1954988 | + | 159 | WP_000831911.1 | hypothetical protein | - |
| CDH88_RS09855 () | 1955076..1955624 | + | 549 | WP_001167422.1 | hypothetical protein | - |
| CDH88_RS09860 () | 1955643..1955891 | - | 249 | WP_001470076.1 | osmoprotectant transport activator ProQ | - |
| CDH88_RS09865 () | 1955960..1956151 | - | 192 | WP_001323513.1 | hypothetical protein | - |
| CDH88_RS09870 () | 1956524..1957215 | - | 692 | Protein_1799 | IS1 family transposase | - |
| CDH88_RS09875 () | 1957275..1957451 | + | 177 | Protein_1800 | transketolase family protein | - |
| CDH88_RS09880 () | 1957714..1957827 | + | 114 | WP_131501864.1 | transposase | - |
| CDH88_RS09890 () | 1958650..1960008 | + | 1359 | WP_000919997.1 | hypothetical protein | VF |
| CDH88_RS28110 () | 1960070..1960525 | + | 456 | WP_000884152.1 | sigma-70 family RNA polymerase sigma factor | - |
| CDH88_RS09900 () | 1960910..1961104 | - | 195 | Protein_1804 | MliC family protein | - |
| CDH88_RS09905 () | 1961303..1962844 | + | 1542 | WP_001298859.1 | IS21 family transposase ISEc12 | Transposase |
| CDH88_RS09910 () | 1962859..1963605 | + | 747 | WP_001016257.1 | IS21 family transposase ISEc12 | Transposase |
| CDH88_RS09915 () | 1963676..1963915 | - | 240 | WP_088172270.1 | MliC family protein | - |
| CDH88_RS09920 () | 1964420..1965109 | - | 690 | WP_073278785.1 | N-acetylmannosamine-6-phosphate 2-epimerase | - |
| CDH88_RS09925 () | 1965109..1966665 | - | 1557 | WP_000983423.1 | maltose/glucose-specific PTS transporter subunit IIC | - |
| CDH88_RS09930 () | 1966831..1967655 | + | 825 | WP_001293448.1 | MurR/RpiR family transcriptional regulator | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|