MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 153739 bp
Accession: NZ_CP020495 Location: 701620..855358 Organism: Escherichia coli strain 103 Replicon: chromosome
Accession: NZ_CP020495 Location: 701620..855358 Organism: Escherichia coli strain 103 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CPA47_RS03395 () | 696622..696990 | + | 369 | WP_001295541.1 | bifunctional dihydroneopterin aldolase/7,8-dihydroneopterin epimerase | - |
| CPA47_RS03400 () | 697081..697902 | + | 822 | WP_001305111.1 | undecaprenyl-diphosphate phosphatase | - |
| CPA47_RS03405 () | 697983..699221 | - | 1239 | WP_000708491.1 | fused tRNA nucleotidyltransferase/2',3'-cyclic phosphodiesterase/2' nucleotidase/phosphatase Cca | - |
| CPA47_RS03410 () | 699285..699905 | - | 621 | WP_001125331.1 | SH3 domain-containing protein | - |
| CPA47_RS03415 () | 700147..701448 | + | 1302 | WP_020233689.1 | inorganic triphosphatase | - |
| CPA47_RS03420 () | 701471..704311 | + | 2841 | WP_001301081.1 | bifunctional [glutamate--ammonia ligase]-adenylyl-L-tyrosine phosphorylase/[glutamate--ammonia-ligase] adenylyltransferase | - |
| CPA47_RS03425 () | 704359..705792 | + | 1434 | WP_000869178.1 | Bifunctional protein HldE | VF |
| - () | 705872..706013 | + | 142 | NuclAT_2 | - | - |
| - () | 705872..706013 | + | 142 | NuclAT_2 | - | - |
| - () | 705872..706013 | + | 142 | NuclAT_2 | - | - |
| - () | 705872..706013 | + | 142 | NuclAT_2 | - | - |
| - () | 705872..706013 | + | 142 | NuclAT_3 | - | - |
| - () | 705872..706013 | + | 142 | NuclAT_3 | - | - |
| - () | 705872..706013 | + | 142 | NuclAT_3 | - | - |
| - () | 705872..706013 | + | 142 | NuclAT_3 | - | - |
| CPA47_RS03430 () | 705912..705971 | - | 60 | WP_010723221.1 | type I toxin-antitoxin system toxin IbsE | - |
| - () | 706247..706389 | + | 143 | NuclAT_1 | - | - |
| - () | 706247..706389 | + | 143 | NuclAT_1 | - | - |
| - () | 706247..706389 | + | 143 | NuclAT_1 | - | - |
| - () | 706247..706389 | + | 143 | NuclAT_1 | - | - |
| - () | 706247..706389 | + | 143 | NuclAT_4 | - | - |
| - () | 706247..706389 | + | 143 | NuclAT_4 | - | - |
| - () | 706247..706389 | + | 143 | NuclAT_4 | - | - |
| - () | 706247..706389 | + | 143 | NuclAT_4 | - | - |
| CPA47_RS03435 () | 706287..706346 | - | 60 | WP_001387081.1 | type I toxin-antitoxin system Ibs family toxin | - |
| CPA47_RS03440 () | 706587..708248 | - | 1662 | WP_001311137.1 | flotillin family protein | - |
| CPA47_RS03445 () | 708275..708904 | - | 630 | WP_000599926.1 | DUF1449 family protein | - |
| CPA47_RS03450 () | 709173..709373 | + | 201 | WP_000350095.1 | cell surface composition regulator GlgS | - |
| CPA47_RS03455 () | 709416..710480 | - | 1065 | WP_029701452.1 | fimbrial protein | - |
| CPA47_RS03460 () | 710482..711231 | - | 750 | WP_001269824.1 | Chaperone protein PapD | VF |
| CPA47_RS03465 () | 711247..713751 | - | 2505 | WP_000277103.1 | Outer membrane usher protein PapC | VF |
| CPA47_RS03470 () | 713811..714362 | - | 552 | WP_001272145.1 | putative fimbrial-like protein YbgD | VF |
| CPA47_RS03475 () | 714646..714936 | - | 291 | WP_001295626.1 | ubiquinone biosynthesis accessory factor UbiK | - |
| CPA47_RS03480 () | 715310..715963 | + | 654 | WP_001076997.1 | 3,4-dihydroxy-2-butanone-4-phosphate synthase | - |
| CPA47_RS26620 () | 716225..716395 | + | 171 | WP_000469266.1 | hypothetical protein | - |
| CPA47_RS03485 () | 716453..717226 | - | 774 | WP_001295627.1 | zinc transporter ZupT | - |
| CPA47_RS03490 () | 717369..718157 | + | 789 | WP_001320780.1 | 4,5-DOPA dioxygenase extradiol | - |
| CPA47_RS03495 () | 718195..719355 | - | 1161 | WP_000442860.1 | glutathionylspermidine synthase family protein | - |
| CPA47_RS03500 () | 719361..720032 | - | 672 | WP_000831543.1 | DUF1190 family protein | - |
| CPA47_RS03505 () | 720180..721661 | - | 1482 | WP_000735278.1 | outer membrane channel protein TolC | - |
| CPA47_RS03510 () | 721866..722495 | + | 630 | WP_000917117.1 | ADP-ribose diphosphatase | - |
| CPA47_RS03515 () | 722496..722918 | + | 423 | WP_000833393.1 | DUF1249 family protein | - |
| CPA47_RS03520 () | 722943..723770 | + | 828 | WP_000444747.1 | 3',5'-cyclic-AMP phosphodiesterase | - |
| CPA47_RS03525 () | 723770..724351 | + | 582 | WP_000105733.1 | esterase YqiA | - |
| CPA47_RS03530 () | 724380..726272 | + | 1893 | WP_000195292.1 | DNA topoisomerase IV subunit B | - |
| CPA47_RS03535 () | 726320..726634 | - | 315 | WP_000958598.1 | antibiotic biosynthesis monooxygenase | - |
| CPA47_RS03540 () | 726665..727246 | - | 582 | WP_000065430.1 | NADPH:quinone oxidoreductase MdaB | - |
| CPA47_RS03545 () | 727565..727897 | + | 333 | WP_023149630.1 | DUF2645 family protein | - |
| CPA47_RS03550 () | 727943..729292 | - | 1350 | WP_000673402.1 | two-component system sensor histidine kinase QseC | - |
| CPA47_RS03555 () | 729289..729948 | - | 660 | WP_001221493.1 | Transcriptional regulatory protein QseB | VF |
| CPA47_RS03560 () | 730100..730492 | + | 393 | WP_000712658.1 | OB fold stress tolerance protein YgiW | - |
| CPA47_RS03565 () | 730545..731027 | + | 483 | WP_000183505.1 | transcriptional regulator | - |
| CPA47_RS03570 () | 731232..731528 | + | 297 | WP_000415584.1 | type II toxin-antitoxin system toxin MqsR | Toxin Detail |
| CPA47_RS03575 () | 731530..731925 | + | 396 | WP_000650107.1 | type II toxin-antitoxin system antitoxin MqsA | Antitoxin Detail |
| CPA47_RS03580 () | 732058..733665 | + | 1608 | WP_001295629.1 | ABC transporter substrate-binding protein | - |
| CPA47_RS03585 () | 733803..736061 | + | 2259 | WP_001281841.1 | DNA topoisomerase IV subunit A | - |
| CPA47_RS03590 () | 736295..737032 | + | 738 | WP_000965722.1 | 1-acylglycerol-3-phosphate O-acyltransferase | - |
| CPA47_RS03595 () | 737107..738519 | + | 1413 | WP_000059388.1 | cell division protein FtsP | - |
| CPA47_RS03600 () | 738630..740849 | + | 2220 | WP_135092923.1 | YgiQ family radical SAM protein | - |
| CPA47_RS03605 () | 740892..741149 | - | 258 | WP_000848528.1 | lipoprotein YqhH | - |
| CPA47_RS03610 () | 741200..742126 | - | 927 | WP_000691628.1 | YbjP/YqhG family protein | - |
| CPA47_RS03615 () | 742326..743153 | - | 828 | WP_000013149.1 | 2,5-didehydrogluconate reductase DkgA | - |
| CPA47_RS03620 () | 743258..744421 | - | 1164 | WP_001058802.1 | alcohol dehydrogenase | - |
| CPA47_RS03625 () | 744615..745514 | + | 900 | WP_001298382.1 | DNA-binding transcriptional regulator YqhC | - |
| CPA47_RS03630 () | 745554..746213 | - | 660 | WP_000268419.1 | DedA family protein | - |
| CPA47_RS03635 () | 746353..747540 | - | 1188 | WP_001301079.1 | cystathionine beta-lyase | - |
| CPA47_RS03640 () | 747792..748526 | + | 735 | WP_000527844.1 | tol-pal system-associated acyl-CoA thioesterase | - |
| CPA47_RS03645 () | 748533..748958 | + | 426 | WP_001240712.1 | TonB system transport protein ExbD | - |
| CPA47_RS03650 () | 749230..750114 | - | 885 | WP_000018760.1 | putative oxidoreductase YghA | VF |
| CPA47_RS03655 () | 750305..750799 | + | 495 | WP_000439331.1 | TIGR00645 family protein | - |
| CPA47_RS03660 () | 750839..751879 | - | 1041 | WP_000262172.1 | L-glyceraldehyde 3-phosphate reductase | - |
| CPA47_RS03665 () | 752036..752920 | + | 885 | Protein_707 | dienelactone hydrolase family protein | - |
| CPA47_RS03670 () | 753039..753326 | + | 288 | WP_001059136.1 | DUF2623 domain-containing protein | - |
| CPA47_RS03675 () | 753515..754633 | + | 1119 | WP_000145410.1 | hydrogenase 2 small subunit | - |
| CPA47_RS03680 () | 754636..755622 | + | 987 | WP_001081870.1 | hydrogenase 2 operon protein HybA | - |
| CPA47_RS03685 () | 755612..756790 | + | 1179 | WP_000017703.1 | Ni/Fe-hydrogenase cytochrome b subunit | - |
| CPA47_RS03690 () | 756787..758490 | + | 1704 | WP_000083065.1 | hydrogenase 2 large subunit | - |
| CPA47_RS03695 () | 758490..758984 | + | 495 | WP_001221939.1 | HyaD/HybD family hydrogenase maturation endopeptidase | - |
| CPA47_RS03700 () | 758977..759465 | + | 489 | WP_000134014.1 | hydrogenase-2 assembly chaperone | - |
| CPA47_RS03705 () | 759458..759799 | + | 342 | WP_000544953.1 | hydrogenase maturation nickel metallochaperone HypA | - |
| CPA47_RS03710 () | 759812..760060 | + | 249 | WP_000334896.1 | hydrogenase maturation factor HybG | - |
| CPA47_RS03715 () | 760183..761049 | - | 867 | WP_001295515.1 | glutathione-dependent disulfide-bond oxidoreductase | - |
| CPA47_RS03720 () | 761254..763113 | + | 1860 | WP_001297309.1 | bifunctional glutathionylspermidine amidase/synthase | - |
| CPA47_RS03725 () | 763405..764904 | + | 1500 | WP_000933250.1 | inorganic phosphate transporter PitB | - |
| CPA47_RS03730 () | 764953..765645 | - | 693 | WP_001190781.1 | thymidylate kinase | - |
| CPA47_RS03735 () | 765819..766532 | + | 714 | WP_024176318.1 | thymidylate kinase | - |
| CPA47_RS03740 () | 766564..767324 | + | 761 | Protein_722 | hypothetical protein | - |
| CPA47_RS03745 () | 767370..768719 | + | 1350 | WP_000896885.1 | lipopolysaccharide biosynthesis protein | - |
| CPA47_RS03750 () | 768719..769543 | + | 825 | WP_000984978.1 | hypothetical protein | - |
| CPA47_RS03755 () | 769555..770115 | + | 561 | WP_001298770.1 | YtfJ family protein | - |
| CPA47_RS03760 () | 770146..771216 | + | 1071 | WP_001542365.1 | LPS export ABC transporter permease LptF | - |
| CPA47_RS03765 () | 771213..772292 | + | 1080 | WP_001542364.1 | LPS export ABC transporter permease LptG | - |
| CPA47_RS03770 () | 772327..773499 | - | 1173 | WP_000524970.1 | 8-amino-7-oxononanoate synthase | VF |
| CPA47_RS03775 () | 773499..773747 | - | 249 | WP_000248097.1 | acyl carrier protein | - |
| CPA47_RS03780 () | 773779..774693 | - | 915 | WP_001077167.1 | NAD-dependent epimerase/dehydratase family protein | - |
| CPA47_RS03785 () | 774690..776411 | - | 1722 | WP_001373528.1 | Long-chain-fatty-acid--AMP ligase FadD26 | VF |
| CPA47_RS03790 () | 776788..777930 | + | 1143 | WP_001300526.1 | DNA-binding protein | - |
| CPA47_RS03795 () | 777937..778701 | - | 765 | WP_001297764.1 | transcriptional regulator GlcC | - |
| CPA47_RS03800 () | 778952..780451 | + | 1500 | WP_000026117.1 | glycolate oxidase subunit GlcD | - |
| CPA47_RS03805 () | 780451..781503 | + | 1053 | WP_000943059.1 | glycolate oxidase subunit GlcE | - |
| CPA47_RS03810 () | 781514..782737 | + | 1224 | WP_001194661.1 | glycolate oxidase subunit GlcF | - |
| CPA47_RS03815 () | 782742..783146 | + | 405 | WP_000853256.1 | protein GlcG | - |
| CPA47_RS03820 () | 783168..785339 | + | 2172 | WP_000084131.1 | malate synthase G | - |
| CPA47_RS03825 () | 785694..787376 | + | 1683 | WP_000259302.1 | glycolate permease GlcA | - |
| CPA47_RS03830 () | 787862..792421 | + | 4560 | WP_029701459.1 | hypothetical protein | VF |
| CPA47_RS03840 () | 792585..793394 | + | 810 | WP_000895873.1 | Leader peptidase PppA | VF |
| CPA47_RS03845 () | 793460..793870 | + | 411 | WP_001305972.1 | type II secretion system pilot lipoprotein GspS-beta | - |
| CPA47_RS03850 () | 793888..794847 | + | 960 | WP_014639304.1 | Type II secretion system protein C | VF |
| CPA47_RS03855 () | 794877..796937 | + | 2061 | WP_029701460.1 | Type II secretion system protein D | VF |
| CPA47_RS03860 () | 796937..798430 | + | 1494 | WP_000249329.1 | Type II secretion system protein E | VF |
| CPA47_RS03865 () | 798430..799653 | + | 1224 | WP_029701462.1 | Type II secretion system protein F | VF |
| CPA47_RS03870 () | 799670..800125 | + | 456 | WP_001087296.1 | Type II secretion system protein G | VF |
| CPA47_RS03875 () | 800129..800692 | + | 564 | WP_001115147.1 | Type II secretion system protein H | VF |
| CPA47_RS03880 () | 800689..801060 | + | 372 | WP_000820109.1 | Type II secretion system protein I | VF |
| CPA47_RS03885 () | 801057..801662 | + | 606 | WP_023147221.1 | Type II secretion system protein J | VF |
| CPA47_RS03890 () | 801659..802636 | + | 978 | WP_000633200.1 | Putative type II secretion system protein K | VF |
| CPA47_RS03895 () | 802633..803811 | + | 1179 | WP_000094981.1 | Type II secretion system protein L | VF |
| CPA47_RS03900 () | 803813..804349 | + | 537 | WP_000942810.1 | Type II secretion system protein M | VF |
| CPA47_RS03905 () | 805410..806186 | + | 777 | WP_000124290.1 | Polysialic acid transport protein KpsM | VF |
| CPA47_RS03910 () | 806183..806857 | + | 675 | WP_029701466.1 | Polysialic acid transport ATP-binding protein KpsT | VF |
| CPA47_RS03915 () | 807027..807422 | + | 396 | WP_001542355.1 | Glycerol-3-phosphate cytidylyltransferase | VF |
| CPA47_RS03920 () | 807525..808775 | + | 1251 | WP_029701467.1 | glycosyltransferase family 29 protein | - |
| CPA47_RS03925 () | 808782..809972 | + | 1191 | WP_001542353.1 | CDP-glycerol glycerophosphotransferase family protein | - |
| CPA47_RS03930 () | 810010..811167 | + | 1158 | WP_029701469.1 | hypothetical protein | - |
| CPA47_RS03935 () | 811580..812547 | + | 968 | Protein_760 | hypothetical protein | - |
| CPA47_RS03940 () | 812809..814041 | - | 1233 | WP_029701471.1 | hypothetical protein | VF |
| CPA47_RS03945 () | 814076..816103 | - | 2028 | WP_029701472.1 | hypothetical protein | VF |
| CPA47_RS03950 () | 816100..816840 | - | 741 | WP_001604840.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | VF |
| CPA47_RS03955 () | 816850..818526 | - | 1677 | WP_001298258.1 | Polysialic acid transport protein KpsD | VF |
| CPA47_RS03960 () | 818550..819698 | - | 1149 | WP_000905922.1 | hypothetical protein | VF |
| CPA47_RS03965 () | 819770..820753 | - | 984 | WP_001298261.1 | Arabinose 5-phosphate isomerase KpsF | VF |
| CPA47_RS03970 () | 821564..821734 | - | 171 | Protein_767 | IS110 family transposase | - |
| CPA47_RS03975 () | 822077..822919 | - | 843 | WP_001290171.1 | DUF4942 domain-containing protein | - |
| CPA47_RS03980 () | 823004..823201 | - | 198 | WP_086795284.1 | DUF957 domain-containing protein | - |
| CPA47_RS03985 () | 823277..823426 | - | 150 | Protein_770 | hypothetical protein | - |
| CPA47_RS03990 () | 823423..823800 | - | 378 | WP_021543420.1 | TA system toxin CbtA family protein | Toxin Detail |
| CPA47_RS03995 () | 823890..824258 | - | 369 | WP_001280951.1 | type IV toxin-antitoxin system YeeU family antitoxin | Antitoxin Detail |
| CPA47_RS04000 () | 824421..824642 | - | 222 | WP_001405861.1 | DUF987 domain-containing protein | - |
| CPA47_RS04005 () | 824711..825187 | - | 477 | WP_001186724.1 | RadC family protein | - |
| CPA47_RS04010 () | 825203..825688 | - | 486 | WP_000213717.1 | antirestriction protein | - |
| CPA47_RS04015 () | 825765..826583 | - | 819 | WP_001175170.1 | DUF945 domain-containing protein | - |
| CPA47_RS04020 () | 826673..826906 | - | 234 | WP_001278288.1 | DUF905 family protein | - |
| CPA47_RS04025 () | 826912..827589 | - | 678 | WP_001097362.1 | hypothetical protein | - |
| CPA47_RS04030 () | 827708..828592 | - | 885 | WP_000010399.1 | 50S ribosome-binding GTPase | - |
| CPA47_RS04035 () | 828699..829685 | + | 987 | WP_029396404.1 | hypothetical protein | - |
| CPA47_RS04040 () | 829682..830473 | - | 792 | WP_000175256.1 | hypothetical protein | - |
| CPA47_RS04050 () | 832165..832896 | + | 732 | WP_001075482.1 | inovirus Gp2 family protein | - |
| CPA47_RS04055 () | 833320..834024 | - | 705 | WP_001389195.1 | toll/interleukin-1 receptor domain-containing protein | - |
| CPA47_RS04060 () | 835569..836135 | + | 567 | WP_001126801.1 | inovirus-type Gp2 protein | - |
| CPA47_RS04065 () | 836393..836965 | + | 573 | WP_000991576.1 | hypothetical protein | - |
| CPA47_RS04070 () | 837034..837267 | + | 234 | WP_086563629.1 | AlpA family transcriptional regulator | - |
| CPA47_RS04080 () | 837535..838035 | + | 501 | WP_001167446.1 | hypothetical protein | - |
| CPA47_RS04085 () | 838124..838309 | + | 186 | WP_001389193.1 | hypothetical protein | - |
| CPA47_RS04090 () | 838287..839933 | + | 1647 | Protein_789 | hypothetical protein | VF |
| CPA47_RS04095 () | 839930..840775 | + | 846 | WP_106651944.1 | hypothetical protein | VF |
| CPA47_RS04100 () | 840735..841609 | - | 875 | Protein_791 | IS66 family transposase ISEc49 | Transposase |
| CPA47_RS04105 () | 841616..842008 | - | 393 | WP_000950652.1 | IS66 family transposase ISEc49 | Transposase |
| CPA47_RS04110 () | 841995..842324 | - | 330 | WP_000042910.1 | IS66 family transposase ISEc49 | Transposase |
| CPA47_RS04115 () | 842454..843126 | + | 673 | Protein_794 | IS3 family transposase ISEc48 | Transposase |
| CPA47_RS04120 () | 843163..843318 | - | 156 | Protein_795 | integrase | - |
| CPA47_RS04125 () | 843526..848484 | + | 4959 | WP_000877066.1 | NERD domain-containing protein | - |
| CPA47_RS04130 () | 848484..850031 | + | 1548 | WP_001294844.1 | hypothetical protein | - |
| CPA47_RS04140 () | 850246..850962 | + | 717 | Protein_798 | transposase | - |
| CPA47_RS04150 () | 851635..853143 | + | 1509 | WP_001189111.1 | group II intron reverse transcriptase/maturase | - |
| CPA47_RS04155 () | 853233..853706 | + | 474 | Protein_800 | IS3 family transposase IS629 | Transposase |
| CPA47_RS04160 () | 853750..854184 | - | 435 | Protein_801 | hypothetical protein | - |
| CPA47_RS04165 () | 854443..855671 | + | 1229 | WP_166426901.1 | IS3 family transposase | - |
| CPA47_RS04170 () | 855766..856979 | + | 1214 | WP_162829202.1 | IS3 family transposase | - |
| CPA47_RS04175 () | 857241..857660 | + | 420 | WP_000422706.1 | IS66 family insertion sequence hypothetical protein | - |
| CPA47_RS04180 () | 857657..858007 | + | 351 | WP_000624710.1 | IS66 family insertion sequence element accessory protein TnpB | - |
| CPA47_RS04185 () | 858038..858799 | + | 762 | Protein_806 | transposase | - |
| CPA47_RS04190 () | 859028..860260 | - | 1233 | WP_001389184.1 | MFS transporter | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|