MGE detailed information
MGE type: IScluster/Tn MGE length: 24121 bp
Accession: NZ_CP020087 Location: 33478..57598 Organism: Shigella flexneri 1a strain 0670 Replicon: plasmid unnamed1
Accession: NZ_CP020087 Location: 33478..57598 Organism: Shigella flexneri 1a strain 0670 Replicon: plasmid unnamed1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| B4376_RS25340 (B4376_25500) | 29699..30601 | + | 903 | WP_015683198.1 | DUF1281 domain-containing protein | - |
| B4376_RS25345 (B4376_25505) | 30598..30909 | + | 312 | WP_011114770.1 | hypothetical protein | - |
| B4376_RS25350 (B4376_25510) | 30973..31656 | + | 684 | WP_000086135.1 | DNA methylase | - |
| B4376_RS25355 (B4376_25515) | 31657..31878 | + | 222 | WP_001104887.1 | hypothetical protein | - |
| B4376_RS27605 | 31838..32324 | + | 487 | Protein_40 | DUF1380 domain-containing protein | - |
| B4376_RS25370 (B4376_25530) | 32369..33139 | + | 771 | WP_001006196.1 | hypothetical protein | - |
| B4376_RS25380 (B4376_25540) | 33478..34197 | - | 720 | Protein_42 | IS110 family transposase ISSfl8 | Transposase |
| B4376_RS25385 (B4376_25545) | 34206..35267 | - | 1062 | Protein_43 | IS66 family transposase ISSfl3 | Transposase |
| B4376_RS25395 (B4376_25555) | 36523..37074 | - | 552 | Protein_45 | IS66 family transposase ISSfl3 | Transposase |
| B4376_RS25400 (B4376_25560) | 37071..37421 | - | 351 | WP_005048975.1 | IS66 family transposase ISSfl3 | Transposase |
| B4376_RS25405 (B4376_25565) | 37418..38092 | - | 675 | WP_001088287.1 | IS66 family transposase ISSfl3 | Transposase |
| B4376_RS25410 (B4376_25570) | 38291..38761 | + | 471 | Protein_48 | IS1 family transposase IS1N | Transposase |
| B4376_RS28010 (B4376_25575) | 38920..39558 | + | 639 | WP_000607008.1 | hypothetical protein | VF |
| B4376_RS27615 | 39673..39942 | + | 270 | Protein_50 | IS3 family transposase ISEc48 | Transposase |
| B4376_RS25425 (B4376_25585) | 40030..41072 | + | 1043 | Protein_51 | IS3 family transposase IS2 | Transposase |
| B4376_RS25430 (B4376_25590) | 41152..41826 | + | 675 | WP_004967157.1 | IS66 family transposase ISSfl3 | Transposase |
| B4376_RS25435 (B4376_25595) | 41823..42173 | + | 351 | WP_005048975.1 | IS66 family transposase ISSfl3 | Transposase |
| B4376_RS25440 (B4376_25600) | 42170..43771 | + | 1602 | WP_011110603.1 | IS66 family transposase ISSfl3 | Transposase |
| B4376_RS25445 (B4376_25605) | 43960..44145 | + | 186 | Protein_55 | IS21 family transposase IS100 | Transposase |
| B4376_RS28015 (B4376_25610) | 44245..44454 | - | 210 | Protein_56 | peptidoglycan-binding protein | - |
| B4376_RS25455 (B4376_25615) | 44504..44755 | - | 252 | WP_015683204.1 | transporter | - |
| B4376_RS25465 (B4376_25625) | 45207..45491 | + | 285 | WP_011114774.1 | ribbon-helix-helix domain-containing protein | Antitoxin Detail |
| B4376_RS25470 (B4376_25630) | 45491..45766 | + | 276 | WP_000421262.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| B4376_RS25485 (B4376_25645) | 46745..47698 | + | 954 | Protein_61 | IS66 family transposase ISEc49 | Transposase |
| B4376_RS25490 (B4376_25650) | 48234..48452 | + | 219 | WP_000813626.1 | type II toxin-antitoxin system antitoxin CcdA | Antitoxin Detail |
| B4376_RS25495 (B4376_25655) | 48454..48759 | + | 306 | WP_001159860.1 | type II toxin-antitoxin system toxin CcdB | Toxin Detail |
| B4376_RS25505 (B4376_25660) | 49152..50789 | + | 1638 | WP_000936806.1 | E3 ubiquitin-protein ligase ipaH9.8 | VF |
| B4376_RS25510 (B4376_25665) | 50997..51266 | + | 270 | Protein_65 | type II toxin-antitoxin system antitoxin YacA | - |
| B4376_RS28580 | 51266..51435 | + | 170 | Protein_66 | type II toxin-antitoxin system toxin YacB | - |
| B4376_RS25515 (B4376_25670) | 51518..52108 | + | 591 | WP_000705601.1 | Protein kinase OspG | VF |
| B4376_RS25525 (B4376_25680) | 52465..52731 | + | 267 | Protein_68 | IS66 family transposase ISCro1 | Transposase |
| B4376_RS25530 (B4376_25685) | 52794..54062 | + | 1269 | Protein_69 | IS4 family transposase IS4 | Transposase |
| B4376_RS25535 | 54119..54854 | + | 736 | Protein_70 | IS3 family transposase | - |
| B4376_RS25550 (B4376_25710) | 55527..57035 | + | 1509 | WP_001189111.1 | group II intron reverse transcriptase/maturase | - |
| B4376_RS25555 (B4376_25715) | 57125..57598 | + | 474 | Protein_72 | IS3 family transposase IS629 | Transposase |
| B4376_RS28585 | 57639..57719 | + | 81 | Protein_73 | hypothetical protein | - |
| B4376_RS28110 (B4376_25720) | 57733..57924 | - | 192 | Protein_74 | IS66 family insertion sequence element accessory protein TnpB | - |
| B4376_RS25565 (B4376_25725) | 57922..58246 | + | 325 | Protein_75 | IS3 family transposase | - |
| B4376_RS25570 (B4376_25730) | 58276..61188 | - | 2913 | WP_011114777.1 | ankyrin repeat domain-containing protein | - |
| B4376_RS25575 (B4376_25735) | 61191..61307 | + | 117 | WP_004996477.1 | hypothetical protein | - |
| B4376_RS25585 (B4376_25740) | 61671..62513 | + | 843 | WP_000931197.1 | polysaccharide deacetylase family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|