MGE detailed information
MGE type: Genomic_island MGE length: 10452 bp
Accession: NZ_CP019730 Location: 5264542..5274993 Organism: Pseudomonas syringae pv. actinidiae strain CRAFRU 12.29 Replicon: chromosome
Accession: NZ_CP019730 Location: 5264542..5274993 Organism: Pseudomonas syringae pv. actinidiae strain CRAFRU 12.29 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| B1R35_RS25235 () | 5259559..5259822 | + | 264 | WP_017683360.1 | hypothetical protein | - |
| B1R35_RS25240 () | 5259950..5261830 | - | 1881 | WP_003382247.1 | methyl-accepting chemotaxis protein | - |
| B1R35_RS25245 () | 5262189..5264111 | + | 1923 | WP_017683359.1 | methyl-accepting chemotaxis protein | - |
| B1R35_RS25250 () | 5264276..5264542 | + | 267 | WP_003382249.1 | ribbon-helix-helix domain-containing protein | - |
| B1R35_RS25255 () | 5264542..5264817 | + | 276 | WP_017683357.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| B1R35_RS25265 () | 5265389..5266657 | + | 1269 | WP_007244158.1 | OprD family porin | - |
| B1R35_RS25270 () | 5266836..5267660 | + | 825 | WP_003380380.1 | NAD(P)-dependent oxidoreductase | - |
| B1R35_RS25275 () | 5267720..5268604 | + | 885 | WP_003380378.1 | 6-deoxy-6-sulfogluconolactonase | VF |
| B1R35_RS25280 () | 5268661..5269700 | + | 1040 | Protein_4654 | TRAP transporter substrate-binding protein | - |
| B1R35_RS25285 () | 5269764..5270291 | + | 528 | WP_003380373.1 | TRAP transporter small permease | - |
| B1R35_RS25290 () | 5270292..5271572 | + | 1281 | WP_003380372.1 | TRAP transporter large permease | - |
| B1R35_RS25295 () | 5271656..5272626 | + | 971 | Protein_4657 | DMT family transporter | - |
| B1R35_RS25300 () | 5272601..5273482 | + | 882 | WP_003380368.1 | aldose 1-epimerase | - |
| B1R35_RS25305 () | 5273597..5273827 | + | 231 | WP_003380366.1 | antitoxin | Antitoxin Detail |
| B1R35_RS25310 () | 5273827..5274231 | + | 405 | WP_003380365.1 | tRNA(fMet)-specific endonuclease VapC | Toxin Detail |
| B1R35_RS25315 () | 5274418..5274993 | - | 576 | WP_019334082.1 | hypothetical protein | - |
| B1R35_RS25320 () | 5274992..5275180 | + | 189 | WP_003380363.1 | hypothetical protein | - |
| B1R35_RS25325 () | 5275416..5275928 | + | 513 | WP_003380362.1 | sigma-70 family RNA polymerase sigma factor | - |
| B1R35_RS25330 () | 5275928..5276590 | + | 663 | WP_003380361.1 | ChrR family anti-sigma-E factor | - |
| B1R35_RS25335 () | 5276666..5276902 | - | 237 | WP_003380360.1 | hypothetical protein | - |
| B1R35_RS25340 () | 5276967..5278223 | - | 1257 | WP_003380359.1 | 3-phosphoshikimate 1-carboxyvinyltransferase | - |
| B1R35_RS25345 () | 5278319..5278801 | - | 483 | WP_003380358.1 | PAS domain-containing protein | - |
| B1R35_RS25350 () | 5278805..5279809 | - | 1005 | WP_003380357.1 | response regulator | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|