MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 114878 bp
Accession: NZ_CP017638 Location: 1372849..1487726 Organism: Dickeya dianthicola RNS04.9 Replicon: chromosome
Accession: NZ_CP017638 Location: 1372849..1487726 Organism: Dickeya dianthicola RNS04.9 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DDI_RS06500 () | 1368389..1369321 | - | 933 | WP_024105424.1 | LysR family transcriptional regulator | - |
| DDI_RS06505 () | 1369435..1370262 | - | 828 | WP_024105425.1 | metal ABC transporter permease | - |
| DDI_RS06510 () | 1370264..1371121 | - | 858 | WP_024105426.1 | metal ABC transporter permease | - |
| DDI_RS06515 () | 1371114..1372010 | - | 897 | WP_024105427.1 | manganese/iron ABC transporter ATP-binding protein | - |
| DDI_RS06520 () | 1372007..1372924 | - | 918 | WP_024105428.1 | metal ABC transporter substrate-binding protein | - |
| DDI_RS06525 () | 1373156..1374040 | - | 885 | WP_024105429.1 | SDR family oxidoreductase | - |
| DDI_RS06530 () | 1374102..1374725 | + | 624 | WP_198298572.1 | TetR/AcrR family transcriptional regulator | - |
| DDI_RS06535 () | 1374936..1375247 | + | 312 | WP_024105431.1 | hypothetical protein | - |
| DDI_RS06540 () | 1375240..1375665 | + | 426 | WP_024105432.1 | hypothetical protein | - |
| DDI_RS06545 () | 1375898..1377205 | - | 1308 | WP_024105433.1 | beta-ketoacyl-ACP synthase II | - |
| DDI_RS06550 () | 1377254..1378060 | - | 807 | WP_024105434.1 | oxidoreductase | - |
| DDI_RS06555 () | 1378124..1381189 | - | 3066 | WP_024105435.1 | efflux RND transporter permease subunit | - |
| DDI_RS06560 () | 1381186..1382301 | - | 1116 | WP_024105436.1 | efflux RND transporter periplasmic adaptor subunit | - |
| DDI_RS06565 () | 1382395..1383012 | - | 618 | WP_024105437.1 | TetR/AcrR family transcriptional regulator | - |
| DDI_RS06570 () | 1383137..1384615 | + | 1479 | WP_024105438.1 | efflux transporter outer membrane subunit | - |
| DDI_RS06575 () | 1384648..1386057 | + | 1410 | WP_024105439.1 | MATE family efflux transporter | - |
| DDI_RS06580 () | 1386245..1386502 | + | 258 | Protein_1265 | amidohydrolase | - |
| DDI_RS06585 () | 1387474..1387977 | + | 504 | WP_024105442.1 | type VI secretion system contractile sheath small subunit | - |
| DDI_RS06590 () | 1388009..1389487 | + | 1479 | WP_024105443.1 | type VI secretion system contractile sheath large subunit | - |
| DDI_RS06595 () | 1389494..1389925 | + | 432 | WP_024105444.1 | type VI secretion system baseplate subunit TssE | - |
| DDI_RS06600 () | 1389928..1391694 | + | 1767 | WP_024105445.1 | type VI secretion system baseplate subunit TssF | - |
| DDI_RS06605 () | 1391658..1392671 | + | 1014 | WP_024107943.1 | type VI secretion system baseplate subunit TssG | - |
| DDI_RS06610 () | 1392674..1393903 | + | 1230 | WP_024105446.1 | type VI secretion system-associated FHA domain protein TagH | - |
| DDI_RS06615 () | 1393903..1394439 | + | 537 | WP_099327164.1 | type VI secretion system lipoprotein TssJ | - |
| DDI_RS06620 () | 1394442..1395779 | + | 1338 | WP_024105448.1 | type VI secretion system baseplate subunit TssK | - |
| DDI_RS06625 () | 1395796..1396572 | + | 777 | WP_024105449.1 | type IVB secretion system protein IcmH/DotU | - |
| DDI_RS06630 () | 1396588..1399224 | + | 2637 | WP_024105450.1 | type VI secretion system ATPase TssH | - |
| DDI_RS06635 () | 1399227..1400765 | + | 1539 | WP_024105451.1 | sigma-54 dependent transcriptional regulator | - |
| DDI_RS06640 () | 1400765..1401328 | + | 564 | WP_024105452.1 | type VI secretion system-associated protein TagO | - |
| DDI_RS06645 () | 1401340..1402776 | + | 1437 | WP_024105453.1 | type VI secretion system protein TssA | - |
| DDI_RS06650 () | 1402802..1406296 | + | 3495 | WP_024105454.1 | type VI secretion system membrane subunit TssM | - |
| DDI_RS06655 () | 1406348..1407781 | + | 1434 | WP_024105455.1 | type VI secretion system ImpA family N-terminal domain-containing protein | - |
| DDI_RS06660 () | 1407852..1409219 | + | 1368 | WP_024105456.1 | SEL1-like repeat protein | - |
| DDI_RS06665 () | 1409242..1410174 | + | 933 | WP_024105457.1 | DKNYY domain-containing protein | - |
| DDI_RS06670 () | 1410430..1411989 | + | 1560 | WP_024105458.1 | sensor domain-containing diguanylate cyclase | - |
| DDI_RS06675 () | 1412209..1413054 | + | 846 | WP_024105459.1 | FTR1 family protein | - |
| DDI_RS06680 () | 1413144..1414265 | + | 1122 | WP_024105460.1 | iron uptake system protein EfeO | - |
| DDI_RS06685 () | 1414277..1415590 | + | 1314 | WP_024105461.1 | deferrochelatase/peroxidase EfeB | - |
| DDI_RS06690 () | 1415640..1415867 | + | 228 | WP_024105462.1 | DUF1272 domain-containing protein | - |
| DDI_RS06695 () | 1416010..1416774 | + | 765 | WP_024105463.1 | sulfite exporter TauE/SafE family protein | - |
| DDI_RS06700 () | 1416938..1417633 | - | 696 | WP_024105464.1 | lactate utilization protein C | - |
| DDI_RS06705 () | 1417633..1419060 | - | 1428 | WP_024105465.1 | iron-sulfur cluster-binding protein | - |
| DDI_RS06710 () | 1419070..1419789 | - | 720 | WP_024105466.1 | (Fe-S)-binding protein | - |
| DDI_RS06715 () | 1420006..1420803 | + | 798 | WP_024105467.1 | helix-turn-helix transcriptional regulator | - |
| DDI_RS06720 () | 1420845..1421540 | - | 696 | WP_024105468.1 | CidB/LrgB family autolysis modulator | - |
| DDI_RS06725 () | 1421530..1421946 | - | 417 | WP_024105469.1 | CidA/LrgA family protein | - |
| DDI_RS06735 () | 1422280..1424481 | - | 2202 | WP_024105470.1 | catalase/peroxidase HPI | - |
| DDI_RS06740 () | 1425084..1425881 | + | 798 | WP_024105471.1 | class I SAM-dependent methyltransferase | - |
| DDI_RS06745 () | 1425953..1427527 | + | 1575 | WP_026594933.1 | nickel ABC transporter substrate-binding protein | - |
| DDI_RS06750 () | 1427612..1428544 | + | 933 | WP_024105473.1 | ABC transporter permease subunit | - |
| DDI_RS06755 () | 1428547..1429410 | + | 864 | WP_024105474.1 | ABC transporter permease subunit | - |
| DDI_RS06760 () | 1429417..1430229 | + | 813 | WP_024105475.1 | ABC transporter ATP-binding protein | - |
| DDI_RS06765 () | 1430233..1430994 | + | 762 | WP_181367086.1 | ABC transporter ATP-binding protein | - |
| DDI_RS06770 () | 1431225..1431695 | + | 471 | WP_024105477.1 | MarR family transcriptional regulator | - |
| DDI_RS06775 () | 1431709..1432887 | + | 1179 | WP_024105478.1 | efflux RND transporter periplasmic adaptor subunit | - |
| DDI_RS06780 () | 1432898..1434424 | + | 1527 | WP_024105479.1 | DHA2 family efflux MFS transporter permease subunit | - |
| DDI_RS06785 () | 1434516..1435415 | + | 900 | WP_024105480.1 | helix-turn-helix domain-containing protein | - |
| DDI_RS06790 () | 1435620..1436105 | + | 486 | WP_024105481.1 | DUF2501 domain-containing protein | - |
| DDI_RS06795 () | 1436247..1436837 | - | 591 | WP_024105482.1 | flavin reductase family protein | - |
| DDI_RS06800 () | 1437218..1437550 | + | 333 | WP_024105483.1 | DUF1971 domain-containing protein | - |
| DDI_RS06805 () | 1437561..1437899 | + | 339 | WP_024105484.1 | DUF1869 domain-containing protein | - |
| DDI_RS06810 () | 1438027..1439016 | + | 990 | Protein_1310 | IS3 family transposase | - |
| DDI_RS06815 () | 1439108..1439983 | + | 876 | WP_024105485.1 | DUF2971 domain-containing protein | - |
| DDI_RS06820 () | 1440074..1444108 | - | 4035 | WP_024105486.1 | hypothetical protein | - |
| DDI_RS06825 () | 1444637..1445410 | + | 774 | Protein_1313 | DUF1738 domain-containing protein | - |
| DDI_RS06830 () | 1446052..1447911 | + | 1860 | WP_024105488.1 | hypothetical protein | - |
| DDI_RS06835 () | 1447986..1448156 | + | 171 | Protein_1315 | DNA primase | - |
| DDI_RS06840 () | 1448438..1448674 | + | 237 | WP_024105490.1 | type II toxin-antitoxin system CcdA family antitoxin | Antitoxin Detail |
| DDI_RS06845 () | 1448677..1448991 | + | 315 | WP_019844797.1 | CcdB family protein | Toxin Detail |
| DDI_RS06850 () | 1448988..1449122 | - | 135 | Protein_1318 | mobilization protein mobC | - |
| DDI_RS06855 () | 1449480..1452578 | + | 3099 | WP_046830389.1 | hypothetical protein | - |
| DDI_RS06860 () | 1452818..1453669 | - | 852 | WP_200863318.1 | hypothetical protein | - |
| DDI_RS06865 () | 1453663..1455228 | - | 1566 | WP_051119500.1 | ATP-binding protein | - |
| DDI_RS06870 () | 1455999..1456559 | - | 561 | WP_187299602.1 | hypothetical protein | - |
| DDI_RS06875 () | 1456651..1457495 | + | 845 | WP_099327152.1 | IS5 family transposase | - |
| DDI_RS21670 () | 1457487..1457843 | - | 357 | WP_144414570.1 | hypothetical protein | - |
| DDI_RS06880 () | 1458105..1458851 | - | 747 | WP_024106442.1 | hypothetical protein | - |
| DDI_RS06885 () | 1458860..1460623 | - | 1764 | WP_024106441.1 | type IV secretion system DNA-binding domain-containing protein | - |
| DDI_RS06895 () | 1461319..1461621 | - | 303 | WP_024106440.1 | Killer protein | - |
| DDI_RS06900 () | 1461662..1462678 | - | 1017 | WP_024106439.1 | P-type DNA transfer ATPase VirB11 | - |
| DDI_RS06905 () | 1462668..1463870 | - | 1203 | WP_024106438.1 | TrbI/VirB10 family protein | - |
| DDI_RS06910 () | 1463867..1464760 | - | 894 | WP_029729588.1 | P-type conjugative transfer protein VirB9 | - |
| DDI_RS06915 () | 1464757..1465440 | - | 684 | WP_024106436.1 | type IV secretion system protein | - |
| DDI_RS06920 () | 1465661..1466689 | - | 1029 | WP_024106435.1 | type IV secretion system protein | - |
| DDI_RS06925 () | 1466701..1466925 | - | 225 | WP_012769218.1 | EexN family lipoprotein | - |
| DDI_RS06930 () | 1466936..1467652 | - | 717 | WP_024106434.1 | type IV secretion system protein | - |
| DDI_RS06935 () | 1467677..1470424 | - | 2748 | WP_024106433.1 | VirB3 family type IV secretion system protein | - |
| DDI_RS06940 () | 1470435..1470710 | - | 276 | WP_035044784.1 | TrbC/VirB2 family protein | - |
| DDI_RS06945 () | 1470730..1471377 | - | 648 | WP_026594786.1 | lytic transglycosylase domain-containing protein | - |
| DDI_RS06950 () | 1471448..1471681 | - | 234 | WP_024106431.1 | hypothetical protein | - |
| DDI_RS06955 () | 1472166..1474352 | + | 2187 | WP_024106430.1 | AAA family ATPase | - |
| DDI_RS06960 () | 1474736..1475512 | - | 777 | WP_024106429.1 | hypothetical protein | - |
| DDI_RS06965 () | 1475787..1475996 | - | 210 | WP_015730135.1 | TraR/DksA family transcriptional regulator | - |
| DDI_RS06970 () | 1475986..1476570 | - | 585 | WP_024106428.1 | DUF2857 domain-containing protein | - |
| DDI_RS06975 () | 1476587..1476781 | - | 195 | WP_012884167.1 | AlpA family transcriptional regulator | - |
| DDI_RS06980 () | 1477448..1477705 | - | 258 | WP_024106427.1 | helix-turn-helix domain-containing protein | - |
| DDI_RS06985 () | 1477819..1478097 | - | 279 | WP_024106426.1 | helix-turn-helix domain-containing protein | - |
| DDI_RS06990 () | 1478231..1478518 | + | 288 | WP_026594947.1 | helix-turn-helix domain-containing protein | - |
| DDI_RS06995 () | 1478797..1479042 | - | 246 | WP_013318575.1 | helix-turn-helix transcriptional regulator | - |
| DDI_RS07000 () | 1479800..1480318 | + | 519 | WP_012768188.1 | Hcp family type VI secretion system effector | - |
| DDI_RS07005 () | 1480432..1482285 | + | 1854 | WP_024106423.1 | type VI secretion system tip protein VgrG | - |
| DDI_RS07010 () | 1482300..1482707 | + | 408 | WP_024106422.1 | DUF1795 domain-containing protein | - |
| DDI_RS07015 () | 1482719..1486678 | + | 3960 | Protein_1351 | PAAR domain-containing protein | - |
| DDI_RS07020 () | 1487068..1487433 | + | 366 | WP_024106420.1 | hypothetical protein | - |
| DDI_RS07025 () | 1487488..1488441 | + | 954 | Protein_1353 | hypothetical protein | - |
| DDI_RS07030 () | 1488438..1488869 | + | 432 | WP_024106418.1 | SMI1/KNR4 family protein | - |
| DDI_RS07035 () | 1489119..1490045 | - | 927 | WP_024106417.1 | hypothetical protein | - |
| DDI_RS07045 () | 1491061..1491372 | + | 312 | WP_024106415.1 | DUF736 domain-containing protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|