MGE detailed information
MGE type: Genomic_island MGE length: 10452 bp
Accession: NZ_CP017009 Location: 5170664..5181115 Organism: Pseudomonas syringae pv. actinidiae strain NZ-47 Replicon: chromosome
Accession: NZ_CP017009 Location: 5170664..5181115 Organism: Pseudomonas syringae pv. actinidiae strain NZ-47 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PsaNZ47_RS25005 () | 5165681..5165944 | + | 264 | WP_017683360.1 | hypothetical protein | - |
| PsaNZ47_RS25010 () | 5166072..5167952 | - | 1881 | WP_003382247.1 | methyl-accepting chemotaxis protein | - |
| PsaNZ47_RS25015 () | 5168311..5170233 | + | 1923 | WP_017683359.1 | methyl-accepting chemotaxis protein | - |
| PsaNZ47_RS25020 () | 5170398..5170664 | + | 267 | WP_003382249.1 | ribbon-helix-helix domain-containing protein | - |
| PsaNZ47_RS25025 () | 5170664..5170939 | + | 276 | WP_017683357.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| PsaNZ47_RS25035 () | 5171511..5172779 | + | 1269 | WP_007244158.1 | OprD family porin | - |
| PsaNZ47_RS25040 () | 5172958..5173782 | + | 825 | WP_003380380.1 | NAD(P)-dependent oxidoreductase | - |
| PsaNZ47_RS25045 () | 5173842..5174726 | + | 885 | WP_003380378.1 | SMP-30/gluconolactonase/LRE family protein | - |
| PsaNZ47_RS25050 () | 5174783..5175822 | + | 1040 | Protein_4564 | TRAP transporter substrate-binding protein | - |
| PsaNZ47_RS25055 () | 5175886..5176413 | + | 528 | WP_003380373.1 | TRAP transporter small permease | - |
| PsaNZ47_RS25060 () | 5176414..5177694 | + | 1281 | WP_003380372.1 | TRAP transporter large permease | - |
| PsaNZ47_RS25065 () | 5177778..5178748 | + | 971 | Protein_4567 | DMT family transporter | - |
| PsaNZ47_RS25070 () | 5178723..5179604 | + | 882 | WP_003380368.1 | aldose 1-epimerase | - |
| PsaNZ47_RS25075 () | 5179719..5179949 | + | 231 | WP_003380366.1 | antitoxin | Antitoxin Detail |
| PsaNZ47_RS25080 () | 5179949..5180353 | + | 405 | WP_003380365.1 | tRNA(fMet)-specific endonuclease VapC | Toxin Detail |
| PsaNZ47_RS25085 () | 5180540..5181115 | - | 576 | WP_019334082.1 | hypothetical protein | - |
| PsaNZ47_RS25090 () | 5181114..5181302 | + | 189 | WP_003380363.1 | hypothetical protein | - |
| PsaNZ47_RS25095 () | 5181538..5182050 | + | 513 | WP_003380362.1 | sigma-70 family RNA polymerase sigma factor | - |
| PsaNZ47_RS25100 () | 5182050..5182712 | + | 663 | WP_003380361.1 | ChrR family anti-sigma-E factor | - |
| PsaNZ47_RS25105 () | 5182788..5183024 | - | 237 | WP_003380360.1 | hypothetical protein | - |
| PsaNZ47_RS25110 () | 5183089..5184345 | - | 1257 | WP_003380359.1 | 3-phosphoshikimate 1-carboxyvinyltransferase | - |
| PsaNZ47_RS25115 () | 5184441..5184923 | - | 483 | WP_003380358.1 | PAS domain-containing protein | - |
| PsaNZ47_RS25120 () | 5184927..5185931 | - | 1005 | WP_003380357.1 | response regulator | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|