MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 60076 bp
Accession: NZ_CP016830 Location: 4145483..4205558 Organism: Xanthomonas fragariae isolate Fap21 Replicon: chromosome
Accession: NZ_CP016830 Location: 4145483..4205558 Organism: Xanthomonas fragariae isolate Fap21 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BER92_RS18920 () | 4141392..4141629 | + | 238 | Protein_3701 | transposase | - |
| BER92_RS22525 () | 4141829..4141936 | + | 108 | Protein_3702 | IS30 family transposase | - |
| BER92_RS18925 () | 4141964..4144204 | - | 2241 | WP_002803755.1 | glycine--tRNA ligase subunit beta | - |
| BER92_RS18930 () | 4144392..4145300 | - | 909 | WP_002803757.1 | glycine--tRNA ligase subunit alpha | - |
| BER92_RS18935 () | 4145391..4147205 | + | 1815 | WP_002803759.1 | GspE/PulE family protein | - |
| BER92_RS18940 () | 4147812..4148576 | + | 765 | WP_002803761.1 | glutamine amidotransferase | - |
| BER92_RS18945 () | 4148622..4149521 | + | 900 | WP_002803762.1 | hypothetical protein | - |
| BER92_RS18950 () | 4149845..4150582 | - | 738 | WP_002803765.1 | twin-arginine translocase subunit TatC | - |
| BER92_RS18955 () | 4150579..4151190 | - | 612 | WP_002803767.1 | Sec-independent protein translocase protein TatB | - |
| BER92_RS18960 () | 4151206..4151433 | - | 228 | WP_002803779.1 | Sec-independent protein translocase subunit TatA | - |
| BER92_RS18965 () | 4151507..4152391 | - | 885 | WP_002803781.1 | hypothetical protein | - |
| BER92_RS18970 () | 4152546..4153511 | + | 966 | WP_002803784.1 | ferrochelatase | - |
| BER92_RS18975 () | 4153514..4154380 | + | 867 | WP_040762195.1 | alpha/beta hydrolase | - |
| BER92_RS18980 () | 4154453..4155238 | - | 786 | WP_040762214.1 | M48 family metallopeptidase | - |
| BER92_RS18985 () | 4155512..4156417 | - | 906 | WP_002803791.1 | recombination-associated protein RdgC | - |
| BER92_RS18990 () | 4156481..4157392 | - | 912 | WP_002803793.1 | tRNA 2-thiocytidine(32) synthetase TtcA | - |
| BER92_RS18995 () | 4157757..4158830 | - | 1074 | WP_002803797.1 | LacI family DNA-binding transcriptional regulator | - |
| BER92_RS22535 () | 4158866..4159437 | + | 572 | Protein_3718 | hypothetical protein | - |
| BER92_RS19010 () | 4159506..4162124 | + | 2619 | Protein_3719 | glycoside hydrolase family 3 C-terminal domain-containing protein | - |
| BER92_RS21480 () | 4162243..4162484 | + | 242 | Protein_3720 | hypothetical protein | - |
| BER92_RS19015 () | 4162461..4163830 | - | 1370 | Protein_3721 | IS5 family transposase IS1478 | Transposase |
| BER92_RS22540 () | 4164067..4164267 | - | 201 | Protein_3722 | IS481 family transposase ISRel12 | Transposase |
| BER92_RS19035 () | 4165703..4166806 | + | 1104 | WP_002803827.1 | type I restriction enzyme HsdR N-terminal domain-containing protein | - |
| BER92_RS19045 () | 4167344..4168150 | + | 807 | WP_002801519.1 | IS5 family transposase ISAzo23 | Transposase |
| BER92_RS22545 () | 4168166..4169700 | - | 1535 | Protein_3726 | GAF domain-containing protein | - |
| BER92_RS19055 () | 4169697..4170290 | - | 594 | WP_002803834.1 | biliverdin-producing heme oxygenase | - |
| BER92_RS21495 () | 4170390..4171170 | - | 781 | Protein_3728 | MFS transporter | - |
| BER92_RS19070 () | 4171297..4173462 | - | 2166 | WP_002803836.1 | lytic murein transglycosylase | - |
| BER92_RS19075 () | 4173849..4174055 | - | 207 | WP_002803837.1 | hypothetical protein | - |
| BER92_RS19080 () | 4174290..4174679 | - | 390 | WP_002803838.1 | YchJ family protein | - |
| BER92_RS19085 () | 4174865..4175644 | + | 780 | WP_002803839.1 | TSUP family transporter | - |
| BER92_RS19095 () | 4175926..4177107 | - | 1182 | WP_002803842.1 | DUF3322 and DUF2220 domain-containing protein | - |
| BER92_RS19100 () | 4177223..4180637 | - | 3415 | Protein_3734 | ATP-binding protein | - |
| BER92_RS19110 () | 4180938..4181639 | - | 702 | WP_002803844.1 | DUF4194 domain-containing protein | - |
| BER92_RS19115 () | 4181623..4183095 | - | 1473 | WP_002803846.1 | DUF3375 domain-containing protein | - |
| BER92_RS21500 () | 4183811..4183812 | - | 2 | WP_088079897.1 | IS5 family transposase | - |
| BER92_RS19125 () | 4184234..4184863 | - | 630 | WP_052032093.1 | GTP cyclohydrolase I FolE | - |
| BER92_RS19130 () | 4184934..4186295 | - | 1362 | WP_002803861.1 | MFS transporter | - |
| BER92_RS19135 () | 4186426..4186848 | - | 423 | WP_002803865.1 | hypothetical protein | - |
| BER92_RS19140 () | 4187165..4188181 | - | 1017 | WP_040762221.1 | hypothetical protein | - |
| BER92_RS19145 () | 4189451..4189657 | + | 207 | WP_002803872.1 | hypothetical protein | - |
| BER92_RS19150 () | 4189644..4190756 | + | 1113 | WP_002803875.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| BER92_RS19155 () | 4191114..4192111 | + | 998 | Protein_3744 | IS3 family transposase | - |
| BER92_RS19160 () | 4192401..4193369 | - | 969 | WP_065975413.1 | IS5 family transposase IS1646 | Transposase |
| BER92_RS21505 () | 4193614..4194627 | - | 1014 | WP_082244192.1 | hypothetical protein | - |
| BER92_RS19165 () | 4194808..4195410 | - | 603 | WP_083215096.1 | IS5 family transposase IS1478 | Transposase |
| BER92_RS22555 () | 4195516..4195818 | - | 303 | WP_145954077.1 | hypothetical protein | - |
| BER92_RS19170 () | 4196020..4196352 | + | 333 | WP_002803887.1 | hypothetical protein | - |
| BER92_RS19175 () | 4196896..4197186 | - | 291 | WP_002803896.1 | HigA family addiction module antidote protein | Antitoxin Detail |
| BER92_RS19180 () | 4197205..4197486 | - | 282 | WP_002803897.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| BER92_RS19185 () | 4197950..4200025 | - | 2076 | WP_065975458.1 | exodeoxyribonuclease V subunit alpha | - |
| BER92_RS19190 () | 4200022..4203891 | - | 3870 | WP_002803902.1 | exodeoxyribonuclease V subunit beta | - |
| BER92_RS19195 () | 4203888..4207292 | - | 3405 | WP_002803905.1 | exodeoxyribonuclease V subunit gamma | - |
| BER92_RS19200 () | 4207695..4208489 | + | 795 | WP_002803908.1 | ATP-binding cassette domain-containing protein | - |
| BER92_RS19205 () | 4208489..4209238 | + | 750 | WP_002803911.1 | MlaE family lipid ABC transporter permease subunit | - |
| BER92_RS19210 () | 4209250..4209783 | + | 534 | WP_002803915.1 | outer membrane lipid asymmetry maintenance protein MlaD | - |
| BER92_RS19215 () | 4209780..4210442 | + | 663 | WP_002803917.1 | ABC transporter substrate-binding protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|