MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 48379 bp
Accession: NZ_CP015137 Location: 4033605..4081983 Organism: Dickeya solani IPO 2222 Replicon: chromosome
Accession: NZ_CP015137 Location: 4033605..4081983 Organism: Dickeya solani IPO 2222 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A4U42_RS17285 () | 4028891..4029565 | + | 675 | WP_022633092.1 | glutathione S-transferase family protein | - |
| A4U42_RS17290 () | 4029977..4030852 | - | 876 | WP_026594453.1 | alpha/beta hydrolase | - |
| A4U42_RS17295 () | 4030767..4031984 | - | 1218 | WP_022633094.1 | dienelactone hydrolase family protein | - |
| A4U42_RS22330 () | 4032386..4032673 | - | 288 | WP_146053333.1 | hypothetical protein | - |
| A4U42_RS21435 () | 4034136..4035200 | + | 1065 | WP_026594454.1 | DNA cytosine methyltransferase | - |
| A4U42_RS17300 () | 4035163..4038162 | + | 3000 | WP_080644163.1 | ATP-binding protein | - |
| A4U42_RS17305 () | 4038164..4039813 | + | 1650 | WP_022633097.1 | hypothetical protein | - |
| A4U42_RS17310 () | 4040174..4040575 | - | 402 | WP_023637748.1 | hypothetical protein | - |
| A4U42_RS22335 () | 4040639..4040932 | - | 294 | WP_146053334.1 | hypothetical protein | - |
| A4U42_RS17315 () | 4041323..4042267 | + | 945 | WP_022633099.1 | DUF1738 domain-containing protein | - |
| A4U42_RS17320 () | 4042588..4042824 | + | 237 | WP_022633100.1 | type II toxin-antitoxin system CcdA family antitoxin | Antitoxin Detail |
| A4U42_RS17325 () | 4042827..4043141 | + | 315 | WP_022633101.1 | CcdB family protein | Toxin Detail |
| A4U42_RS17330 () | 4043138..4043395 | - | 258 | WP_022633102.1 | hypothetical protein | - |
| A4U42_RS17335 () | 4043571..4044878 | - | 1308 | WP_022633103.1 | type II toxin-antitoxin system HipA family toxin | - |
| A4U42_RS21440 () | 4044878..4045285 | - | 408 | WP_071598628.1 | helix-turn-helix transcriptional regulator | - |
| A4U42_RS17340 () | 4045668..4046414 | - | 747 | WP_022633104.1 | hypothetical protein | - |
| A4U42_RS17345 () | 4046423..4048186 | - | 1764 | Protein_3422 | type IV secretory system conjugative DNA transfer family protein | - |
| A4U42_RS17350 () | 4048883..4049185 | - | 303 | WP_022633106.1 | KikA | - |
| A4U42_RS17355 () | 4049226..4050242 | - | 1017 | WP_022633107.1 | Type IV secretion system protein VirB11 | VF |
| A4U42_RS17360 () | 4050232..4051440 | - | 1209 | Protein_3425 | Type IV secretion system protein PtlG | VF |
| A4U42_RS17365 () | 4051437..4052327 | - | 891 | WP_022633110.1 | P-type conjugative transfer protein VirB9 | - |
| A4U42_RS17370 () | 4052327..4053010 | - | 684 | WP_022633111.1 | Type IV secretion system protein PtlE | VF |
| A4U42_RS17375 () | 4053231..4054259 | - | 1029 | WP_022633112.1 | type IV secretion system protein | - |
| A4U42_RS21455 () | 4054271..4054495 | - | 225 | WP_022633113.1 | EexN family lipoprotein | - |
| A4U42_RS17380 () | 4054507..4055223 | - | 717 | WP_022633114.1 | type IV secretion system protein | - |
| A4U42_RS17385 () | 4055249..4057996 | - | 2748 | WP_022633115.1 | Type IV secretion system protein virB4 | VF |
| A4U42_RS17390 () | 4058006..4058281 | - | 276 | WP_012769221.1 | hypothetical protein | VF |
| A4U42_RS17395 () | 4058301..4058948 | - | 648 | WP_022633116.1 | Type IV secretion system protein virB1 | VF |
| A4U42_RS17400 () | 4059018..4059251 | - | 234 | WP_022633117.1 | hypothetical protein | - |
| A4U42_RS17405 () | 4059817..4060332 | - | 516 | WP_022633118.1 | NAD(P)H-dependent oxidoreductase | - |
| A4U42_RS17410 () | 4060352..4061317 | - | 966 | WP_022633119.1 | aldo/keto reductase | - |
| A4U42_RS17415 () | 4061377..4062243 | - | 867 | WP_022633120.1 | SMP-30/gluconolactonase/LRE family protein | - |
| A4U42_RS17420 () | 4062326..4062799 | - | 474 | WP_022633121.1 | DMT family transporter | - |
| A4U42_RS17425 () | 4062811..4064208 | - | 1398 | WP_022633122.1 | amidohydrolase family protein | - |
| A4U42_RS17430 () | 4064340..4065224 | + | 885 | WP_022633123.1 | HTH-type transcriptional regulator PgrR | VF |
| A4U42_RS17435 () | 4065488..4065697 | - | 210 | WP_022633124.1 | TraR/DksA family transcriptional regulator | - |
| A4U42_RS17440 () | 4065687..4066271 | - | 585 | WP_022633125.1 | DUF2857 domain-containing protein | - |
| A4U42_RS17445 () | 4066288..4066482 | - | 195 | WP_022633126.1 | AlpA family transcriptional regulator | - |
| A4U42_RS17450 () | 4067158..4067415 | - | 258 | WP_012769229.1 | helix-turn-helix domain-containing protein | - |
| A4U42_RS17455 () | 4067529..4067807 | - | 279 | WP_012884168.1 | HTH-type transcriptional regulator Xre | VF |
| A4U42_RS17460 () | 4067941..4068228 | + | 288 | WP_022633127.1 | helix-turn-helix domain-containing protein | - |
| A4U42_RS17465 () | 4068506..4068751 | - | 246 | WP_013318575.1 | helix-turn-helix transcriptional regulator | - |
| A4U42_RS17470 () | 4069435..4069953 | + | 519 | WP_022633128.1 | Major exported protein | VF |
| A4U42_RS17475 () | 4070066..4071928 | + | 1863 | WP_022633129.1 | Actin cross-linking toxin VgrG1 | VF |
| A4U42_RS17480 () | 4072006..4072446 | + | 441 | WP_023637755.1 | DUF1795 domain-containing protein | - |
| A4U42_RS17485 () | 4072464..4076294 | + | 3831 | Protein_3451 | PAAR domain-containing protein | - |
| A4U42_RS17490 () | 4076663..4077508 | + | 846 | WP_023637756.1 | hypothetical protein | - |
| A4U42_RS22340 () | 4077807..4077953 | + | 147 | WP_155246175.1 | hypothetical protein | - |
| A4U42_RS17500 () | 4078115..4079041 | - | 927 | WP_022633133.1 | hypothetical protein | - |
| A4U42_RS17505 () | 4080057..4080368 | + | 312 | WP_022633134.1 | DUF736 domain-containing protein | - |
| A4U42_RS17510 () | 4080524..4081806 | - | 1283 | Protein_3456 | Prophage integrase IntA ; Integrase | Integrase |
| A4U42_RS17520 () | 4082153..4082944 | - | 792 | WP_022633137.1 | DgsA anti-repressor MtfA | - |
| A4U42_RS17530 () | 4083807..4084958 | - | 1152 | WP_022633138.1 | type I restriction enzyme HsdR N-terminal domain-containing protein | - |
| A4U42_RS17535 () | 4084992..4085381 | - | 390 | WP_023637758.1 | helix-turn-helix domain-containing protein | - |
| A4U42_RS17540 () | 4085809..4085976 | + | 168 | WP_022633139.1 | YqaE/Pmp3 family membrane protein | - |
| A4U42_RS17545 () | 4086049..4086603 | - | 555 | WP_022633140.1 | flavodoxin family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|