MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 156353 bp
Accession: NZ_CP015092 Location: 1..156353 Organism: Pelagibaca abyssi strain JLT2014 Replicon: plasmid pPABY3
Accession: NZ_CP015092 Location: 1..156353 Organism: Pelagibaca abyssi strain JLT2014 Replicon: plasmid pPABY3
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| Ga0080574_RS02680 () | 367..747 | - | 381 | WP_009503876.1 | PepSY domain-containing protein | - |
| Ga0080574_RS02685 () | 930..2315 | - | 1386 | WP_076695112.1 | ferredoxin reductase family protein | - |
| Ga0080574_RS02690 () | 2272..2589 | - | 318 | WP_076695114.1 | PepSY domain-containing protein | - |
| Ga0080574_RS02695 () | 2735..3394 | + | 660 | WP_009503873.1 | Transcriptional regulatory protein QseB | VF |
| Ga0080574_RS02700 () | 3391..4758 | + | 1368 | WP_009503872.1 | sensor histidine kinase N-terminal domain-containing protein | - |
| Ga0080574_RS26150 () | 4939..5103 | - | 165 | WP_007803240.1 | hypothetical protein | - |
| Ga0080574_RS02705 () | 5490..5963 | - | 474 | WP_076695116.1 | hypothetical protein | - |
| Ga0080574_RS02710 () | 6063..8219 | - | 2157 | WP_076695229.1 | ParB/RepB/Spo0J family partition protein | - |
| Ga0080574_RS02715 () | 8334..9467 | - | 1134 | WP_076695118.1 | hypothetical protein | - |
| Ga0080574_RS02720 () | 9671..10594 | - | 924 | WP_076695120.1 | ParB/RepB/Spo0J family partition protein | - |
| Ga0080574_RS02725 () | 10584..11729 | - | 1146 | WP_161489483.1 | Chromosome partitioning protein ParA | VF |
| Ga0080574_RS02730 () | 12023..12907 | - | 885 | WP_076695122.1 | Tn3 family transposase ISPsy42 | Transposase |
| Ga0080574_RS02735 () | 13134..14201 | + | 1068 | WP_007803223.1 | hypothetical protein | - |
| Ga0080574_RS02740 () | 14351..14815 | + | 465 | WP_007803221.1 | excisionase family DNA-binding protein | Antitoxin Detail |
| Ga0080574_RS02745 () | 14812..15381 | + | 570 | WP_007803220.1 | PIN domain-containing protein | Toxin Detail |
| Ga0080574_RS02750 () | 15440..16282 | - | 843 | WP_007803218.1 | hypothetical protein | - |
| Ga0080574_RS02755 () | 16534..17466 | + | 933 | WP_007803217.1 | IS5 family transposase ISRhba5 | Transposase |
| Ga0080574_RS02760 () | 17557..18435 | + | 879 | WP_007803215.1 | TniB family NTP-binding protein | - |
| Ga0080574_RS02765 () | 18432..19223 | + | 792 | WP_007803213.1 | TniQ family protein | - |
| Ga0080574_RS02770 () | 19295..19807 | + | 513 | Protein_20 | IS110 family transposase ISAzs4 | Transposase |
| Ga0080574_RS02775 () | 20154..21548 | - | 1395 | WP_007803209.1 | membrane protein | - |
| Ga0080574_RS02780 () | 21743..22674 | - | 932 | Protein_22 | IS5 family transposase | - |
| Ga0080574_RS25575 () | 22987..23151 | - | 165 | Protein_23 | IS110 family transposase | - |
| Ga0080574_RS02785 () | 23297..24931 | + | 1635 | WP_024099411.1 | Mu transposase C-terminal domain-containing protein | - |
| Ga0080574_RS02790 () | 24933..25814 | + | 882 | WP_024099410.1 | TniB family NTP-binding protein | - |
| Ga0080574_RS02795 () | 25811..26602 | + | 792 | WP_008335465.1 | TniQ family protein | - |
| Ga0080574_RS02800 () | 26655..28466 | + | 1812 | Protein_27 | Protein VirD4 | VF |
| Ga0080574_RS02805 () | 28602..29729 | - | 1128 | WP_083716748.1 | SAVED domain-containing protein | - |
| Ga0080574_RS02810 () | 29821..30333 | - | 513 | WP_074743312.1 | Mov34/MPN/PAD-1 family protein | - |
| Ga0080574_RS26155 () | 30323..30652 | - | 330 | WP_198039722.1 | hypothetical protein | - |
| Ga0080574_RS02825 () | 31036..31793 | + | 758 | WP_156876251.1 | IS5 family transposase IS1248A | Transposase |
| Ga0080574_RS02830 () | 31781..32875 | - | 1095 | WP_076695131.1 | ThiF family adenylyltransferase | - |
| Ga0080574_RS02835 () | 32875..34113 | - | 1239 | WP_052453650.1 | nucleotidyltransferase | - |
| Ga0080574_RS02840 () | 34303..35379 | - | 1077 | WP_076695134.1 | hypothetical protein | VF |
| Ga0080574_RS02845 () | 35392..35805 | - | 414 | WP_076695136.1 | hypothetical protein | - |
| Ga0080574_RS02850 () | 35802..35996 | - | 195 | WP_076695138.1 | hypothetical protein | - |
| Ga0080574_RS02855 () | 35993..36979 | - | 987 | WP_055296391.1 | Type IV secretion system protein VirB11 | VF |
| Ga0080574_RS02860 () | 36984..38363 | - | 1380 | WP_076695140.1 | Type IV secretion system protein PtlG | VF |
| Ga0080574_RS02865 () | 38360..39025 | - | 666 | WP_198039724.1 | Protein virB9 | VF |
| Ga0080574_RS02870 () | 39058..39714 | - | 657 | WP_009503797.1 | type IV secretion system protein | - |
| Ga0080574_RS02875 () | 39826..40635 | - | 810 | WP_076695233.1 | conjugal transfer protein TraF | - |
| Ga0080574_RS02880 () | 40635..41789 | - | 1155 | WP_198039723.1 | lytic transglycosylase domain-containing protein | - |
| Ga0080574_RS26160 () | 41779..41946 | - | 168 | WP_170846621.1 | hypothetical protein | - |
| Ga0080574_RS02885 () | 41943..44318 | - | 2376 | WP_076695146.1 | type IV secretion system DNA-binding domain-containing protein | - |
| Ga0080574_RS02890 () | 44308..44586 | - | 279 | WP_012187324.1 | hypothetical protein | VF |
| Ga0080574_RS02895 () | 44579..44872 | - | 294 | WP_009503803.1 | Type IV secretion system protein virB2 | VF |
| Ga0080574_RS02900 () | 44869..45483 | - | 615 | WP_076695148.1 | lytic transglycosylase domain-containing protein | - |
| Ga0080574_RS02905 () | 45527..45895 | - | 369 | WP_058123676.1 | hypothetical protein | - |
| Ga0080574_RS02910 () | 46106..46357 | + | 252 | WP_076695150.1 | hypothetical protein | - |
| Ga0080574_RS02915 () | 46635..47831 | + | 1197 | WP_076695235.1 | IS256 family transposase ISPso1 | Transposase |
| Ga0080574_RS02920 () | 47889..48146 | + | 258 | WP_028284972.1 | helix-turn-helix domain-containing protein | - |
| Ga0080574_RS02930 () | 48664..48900 | - | 237 | Protein_52 | hypothetical protein | - |
| Ga0080574_RS02935 () | 49042..50676 | + | 1635 | WP_024099411.1 | Mu transposase C-terminal domain-containing protein | - |
| Ga0080574_RS02940 () | 50678..51559 | + | 882 | WP_024099410.1 | TniB family NTP-binding protein | - |
| Ga0080574_RS02945 () | 51556..52347 | + | 792 | WP_008335465.1 | TniQ family protein | - |
| Ga0080574_RS26165 () | 52403..52870 | - | 468 | Protein_56 | hypothetical protein | - |
| Ga0080574_RS02955 () | 53173..53535 | - | 363 | WP_005645232.1 | STAS/SEC14 domain-containing protein | - |
| Ga0080574_RS02960 () | 53507..54472 | - | 966 | WP_007803480.1 | cation diffusion facilitator family transporter | - |
| Ga0080574_RS02965 () | 54462..55232 | - | 771 | WP_005645237.1 | transglutaminase-like domain-containing protein | - |
| Ga0080574_RS02970 () | 55302..55922 | - | 621 | WP_008327361.1 | cation diffusion facilitator family transporter | - |
| Ga0080574_RS02975 () | 56005..56433 | - | 429 | WP_007803476.1 | IS607 family transposase ISChh1 | Transposase |
| Ga0080574_RS02980 () | 56647..57213 | + | 567 | WP_040643209.1 | SCO family protein | - |
| Ga0080574_RS02985 () | 57219..57641 | + | 423 | WP_046002647.1 | disulfide bond formation protein B | - |
| Ga0080574_RS02990 () | 57638..58297 | + | 660 | WP_050532586.1 | thioredoxin domain-containing protein | - |
| Ga0080574_RS02995 () | 58323..58790 | + | 468 | WP_040643243.1 | copper chaperone PCu(A)C | - |
| Ga0080574_RS03000 () | 58790..59416 | + | 627 | WP_050532587.1 | SCO family protein | - |
| Ga0080574_RS03005 () | 59413..60786 | + | 1374 | WP_076695154.1 | M23 family metallopeptidase | - |
| Ga0080574_RS03010 () | 60790..61248 | + | 459 | WP_076695156.1 | DUF411 domain-containing protein | - |
| Ga0080574_RS03015 () | 61271..62053 | + | 783 | WP_054540603.1 | ZIP family metal transporter | - |
| Ga0080574_RS03020 () | 62058..62531 | + | 474 | WP_076695159.1 | Lipoprotein signal peptidase | VF |
| Ga0080574_RS03025 () | 62528..64099 | + | 1572 | WP_050775788.1 | apolipoprotein N-acyltransferase | - |
| Ga0080574_RS25745 () | 64099..64266 | + | 168 | WP_008282832.1 | hypothetical protein | - |
| Ga0080574_RS03030 () | 64291..66228 | + | 1938 | WP_076695161.1 | penicillin acylase family protein | - |
| Ga0080574_RS03035 () | 66225..67217 | + | 993 | WP_076695163.1 | cytochrome c oxidase assembly protein | - |
| Ga0080574_RS03040 () | 67455..67925 | - | 471 | WP_076695165.1 | Transcriptional regulator MntR | VF |
| Ga0080574_RS03045 () | 68020..69900 | + | 1881 | WP_076695167.1 | cytochrome C | - |
| Ga0080574_RS03050 () | 69900..70775 | + | 876 | WP_009824424.1 | phosphate/phosphite/phosphonate ABC transporter substrate-binding protein | - |
| Ga0080574_RS03055 () | 70772..71554 | + | 783 | WP_076695169.1 | Phosphate-import ATP-binding protein PhnC | VF |
| Ga0080574_RS03060 () | 71554..72312 | + | 759 | WP_076695171.1 | phosphonate ABC transporter, permease protein PhnE | - |
| Ga0080574_RS03065 () | 72316..72828 | - | 513 | WP_156876253.1 | L,D-transpeptidase family protein | - |
| Ga0080574_RS03070 () | 72892..75078 | - | 2187 | WP_076695173.1 | cation-translocating P-type ATPase | - |
| Ga0080574_RS03080 () | 75458..75727 | + | 270 | WP_005613342.1 | hypothetical protein | - |
| Ga0080574_RS03085 () | 75767..76432 | - | 666 | WP_005613343.1 | L,D-transpeptidase | - |
| Ga0080574_RS03090 () | 76868..77218 | - | 351 | WP_005613345.1 | metalloregulator ArsR/SmtB family transcription factor | - |
| Ga0080574_RS03095 () | 77275..78129 | + | 855 | WP_076695178.1 | cation transporter | - |
| Ga0080574_RS03100 () | 78126..78635 | + | 510 | WP_076695180.1 | signal peptidase II | - |
| Ga0080574_RS03105 () | 78682..79194 | + | 513 | WP_076695239.1 | TRAP transporter small permease subunit | - |
| Ga0080574_RS03110 () | 79187..80556 | + | 1370 | Protein_88 | TRAP transporter large permease subunit | - |
| Ga0080574_RS03115 () | 80684..81931 | + | 1248 | WP_005613350.1 | cytochrome P450 | - |
| Ga0080574_RS03120 () | 81915..82574 | - | 660 | WP_198039720.1 | cation diffusion facilitator family transporter | - |
| Ga0080574_RS03125 () | 82682..83248 | - | 567 | WP_076695181.1 | class I SAM-dependent methyltransferase | - |
| Ga0080574_RS03130 () | 83303..84037 | - | 735 | WP_009824512.1 | cytochrome C biogenesis protein CcdA | - |
| Ga0080574_RS03135 () | 84031..84531 | - | 501 | WP_067264422.1 | hypothetical protein | - |
| Ga0080574_RS03140 () | 84552..85112 | - | 561 | WP_076695183.1 | cytochrome-c oxidase | - |
| Ga0080574_RS03145 () | 85118..85552 | - | 435 | WP_076695185.1 | copper chaperone PCu(A)C | - |
| Ga0080574_RS03150 () | 85570..86211 | - | 642 | WP_076695187.1 | SCO family protein | - |
| Ga0080574_RS03155 () | 86201..86956 | - | 756 | WP_076695189.1 | DsbA family protein | - |
| Ga0080574_RS03160 () | 87008..87289 | - | 282 | WP_076695191.1 | hypothetical protein | - |
| Ga0080574_RS03165 () | 87325..87510 | - | 186 | WP_083716751.1 | hypothetical protein | - |
| Ga0080574_RS03170 () | 87601..88125 | - | 525 | WP_076695195.1 | TlpA family protein disulfide reductase | - |
| Ga0080574_RS03175 () | 88122..88694 | - | 573 | WP_198039721.1 | DsbE family thiol:disulfide interchange protein | - |
| Ga0080574_RS03180 () | 88691..89176 | - | 486 | WP_076695200.1 | cytochrome c | - |
| Ga0080574_RS03185 () | 89306..89803 | - | 498 | WP_093743767.1 | metal-binding protein | - |
| Ga0080574_RS03190 () | 89815..90690 | - | 876 | WP_198039725.1 | glycoside hydrolase | - |
| Ga0080574_RS03195 () | 90768..92219 | - | 1452 | WP_076695202.1 | multicopper oxidase family protein | - |
| Ga0080574_RS03205 () | 92719..93147 | - | 429 | WP_074837422.1 | Cu(I)-responsive transcriptional regulator | - |
| Ga0080574_RS03210 () | 93236..95788 | - | 2553 | WP_074837423.1 | UDP-glucose 4-epimerase | VF |
| Ga0080574_RS03225 () | 96222..98312 | + | 2091 | WP_081285562.1 | thioredoxin family protein | - |
| Ga0080574_RS03230 () | 98315..99083 | - | 769 | Protein_109 | glutaredoxin | - |
| Ga0080574_RS03235 () | 99104..99808 | - | 705 | Protein_110 | DUF305 domain-containing protein | - |
| Ga0080574_RS03240 () | 99973..100305 | + | 333 | WP_083716752.1 | IS66 family transposase ISUnCu14 | Transposase |
| Ga0080574_RS03245 () | 100299..100652 | + | 354 | WP_076695208.1 | IS66 family transposase ISRel8 | Transposase |
| Ga0080574_RS03250 () | 100707..102257 | + | 1551 | WP_076695246.1 | IS66 family transposase ISRel8 | Transposase |
| Ga0080574_RS25755 () | 102287..102538 | - | 252 | Protein_114 | DUF305 domain-containing protein | - |
| Ga0080574_RS03260 () | 102659..103048 | - | 390 | WP_009824489.1 | Cu(I)-responsive transcriptional regulator | - |
| Ga0080574_RS03265 () | 103058..105568 | - | 2511 | WP_067264436.1 | heavy metal translocating P-type ATPase | - |
| Ga0080574_RS03270 () | 105706..105912 | + | 207 | WP_005619165.1 | heavy-metal-associated domain-containing protein | - |
| Ga0080574_RS03275 () | 105921..106640 | - | 720 | WP_076695210.1 | DsbA family protein | - |
| Ga0080574_RS03280 () | 106640..107134 | - | 495 | WP_005619169.1 | c-type cytochrome | - |
| Ga0080574_RS03285 () | 107131..108519 | - | 1389 | WP_050686572.1 | multicopper oxidase family protein | - |
| Ga0080574_RS03290 () | 108536..109426 | - | 891 | WP_076695212.1 | cytochrome c | - |
| Ga0080574_RS03295 () | 109431..110030 | - | 600 | WP_106406159.1 | cytochrome c | - |
| Ga0080574_RS03300 () | 110036..110494 | - | 459 | WP_005619178.1 | cytochrome c | - |
| Ga0080574_RS03305 () | 110494..111066 | - | 573 | WP_043847205.1 | L,D-transpeptidase | - |
| Ga0080574_RS03310 () | 111195..111788 | - | 594 | WP_005619183.1 | L,D-transpeptidase | - |
| Ga0080574_RS03315 () | 111806..113248 | - | 1443 | WP_050672446.1 | HAMP domain-containing protein | - |
| Ga0080574_RS03320 () | 113245..113964 | - | 720 | WP_076695214.1 | Transcriptional regulatory protein OmpR | VF |
| Ga0080574_RS03325 () | 114090..114536 | + | 447 | WP_037953522.1 | DUF411 domain-containing protein | - |
| Ga0080574_RS03330 () | 114634..115176 | + | 543 | WP_050672448.1 | hypothetical protein | - |
| Ga0080574_RS03335 () | 115296..115607 | + | 312 | WP_037953520.1 | DUF2933 domain-containing protein | - |
| Ga0080574_RS03340 () | 115888..117045 | - | 1158 | WP_043847209.1 | c-type cytochrome biogenesis protein CcmI | - |
| Ga0080574_RS03345 () | 117042..117512 | - | 471 | WP_009824475.1 | cytochrome c-type biogenesis protein CcmH | - |
| Ga0080574_RS03350 () | 117509..118075 | - | 567 | WP_009824474.1 | DsbE family thiol:disulfide interchange protein | - |
| Ga0080574_RS03355 () | 118078..120078 | - | 2001 | WP_076695215.1 | Cytochrome c-type biogenesis protein CcmF | VF |
| Ga0080574_RS03360 () | 120268..120819 | + | 552 | WP_067627155.1 | calcium-binding protein | - |
| Ga0080574_RS03365 () | 120859..121326 | + | 468 | WP_043847215.1 | rhodanese-like domain-containing protein | - |
| Ga0080574_RS03370 () | 121328..122779 | + | 1452 | WP_043847217.1 | multicopper oxidase domain-containing protein | - |
| Ga0080574_RS25760 () | 122850..122993 | + | 144 | WP_009824469.1 | hypothetical protein | - |
| Ga0080574_RS03375 () | 122983..123657 | + | 675 | WP_043847219.1 | TVP38/TMEM64 family protein | - |
| Ga0080574_RS03380 () | 123745..124302 | + | 558 | WP_009824465.1 | ubiquinol-cytochrome c reductase iron-sulfur subunit | - |
| Ga0080574_RS03385 () | 124424..126769 | + | 2346 | WP_043847221.1 | Copper-transporting P-type ATPase | VF |
| Ga0080574_RS03390 () | 126789..127727 | + | 939 | Protein_142 | cation transporter | - |
| Ga0080574_RS03395 () | 127845..128486 | - | 642 | WP_108895363.1 | Crp/Fnr family transcriptional regulator | - |
| Ga0080574_RS03400 () | 128485..129007 | + | 523 | Protein_144 | hypothetical protein | - |
| Ga0080574_RS03405 () | 129077..130006 | - | 930 | WP_050672452.1 | prolipoprotein diacylglyceryl transferase | - |
| Ga0080574_RS03410 () | 130466..130900 | + | 435 | Protein_146 | DUF3047 domain-containing protein | - |
| Ga0080574_RS03415 () | 130956..132152 | - | 1197 | WP_076695235.1 | IS256 family transposase ISPso1 | Transposase |
| Ga0080574_RS03420 () | 132299..132538 | + | 240 | Protein_148 | DUF3047 domain-containing protein | - |
| Ga0080574_RS03425 () | 132667..133951 | + | 1285 | Protein_149 | multicopper oxidase family protein | - |
| Ga0080574_RS03430 () | 134121..135365 | + | 1245 | WP_050672453.1 | glycoside hydrolase | - |
| Ga0080574_RS03435 () | 135556..136011 | - | 456 | Protein_151 | hypothetical protein | - |
| Ga0080574_RS03440 () | 136334..137785 | - | 1452 | WP_076695217.1 | mercury(II) reductase | - |
| Ga0080574_RS03445 () | 137844..139193 | - | 1350 | WP_050672455.1 | NAD(P)/FAD-dependent oxidoreductase | - |
| Ga0080574_RS03450 () | 139177..139617 | - | 441 | WP_081285561.1 | mercury resistance system transport protein MerF | - |
| Ga0080574_RS03455 () | 139655..139960 | - | 306 | WP_048535538.1 | heavy-metal-associated domain-containing protein | - |
| Ga0080574_RS03460 () | 139973..140380 | - | 408 | WP_009824452.1 | mercury transporter | - |
| Ga0080574_RS03465 () | 140477..140878 | + | 402 | WP_037953553.1 | helix-turn-helix domain-containing protein | - |
| Ga0080574_RS03470 () | 140948..141940 | - | 993 | Protein_158 | arsenic resistance protein | - |
| Ga0080574_RS03475 () | 142238..143305 | - | 1068 | WP_076695219.1 | hypothetical protein | - |
| Ga0080574_RS03480 () | 143491..144282 | - | 792 | WP_008335465.1 | TniQ family protein | - |
| Ga0080574_RS03485 () | 144279..145160 | - | 882 | WP_024099410.1 | TniB family NTP-binding protein | - |
| Ga0080574_RS03490 () | 145162..146796 | - | 1635 | WP_024099411.1 | Mu transposase C-terminal domain-containing protein | - |
| Ga0080574_RS03495 () | 146940..147887 | + | 948 | Protein_163 | endonuclease | - |
| Ga0080574_RS03500 () | 147896..148108 | + | 213 | WP_156876255.1 | hypothetical protein | - |
| Ga0080574_RS03505 () | 148238..149872 | + | 1635 | WP_024099411.1 | Mu transposase C-terminal domain-containing protein | - |
| Ga0080574_RS03510 () | 149874..150755 | + | 882 | WP_024099410.1 | TniB family NTP-binding protein | - |
| Ga0080574_RS03515 () | 150752..151543 | + | 792 | WP_008335465.1 | TniQ family protein | - |
| Ga0080574_RS03520 () | 151592..153028 | - | 1437 | Protein_168 | cadmium-translocating P-type ATPase | - |
| Ga0080574_RS03525 () | 153034..154014 | - | 981 | WP_076695223.1 | FAD:protein FMN transferase | - |
| Ga0080574_RS03530 () | 153995..156202 | - | 2208 | WP_076695225.1 | PepSY domain-containing protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|